F247245

General Info

Members Datasets Scaffolds Average Seq Length
165 120 142 1021

Family's Representative Sequence

Representative Sequence 3300053727|Ga0500611_000028|Ga0500611_000028_87161_90589
Length 1142
Sequence VVAHTQLCKPVTAYCFRPKLFIEQKLHKIMKNKHQTVAAILLVMRITFVQIILSAVCITSLNATEANSQSVLDKPFTISVENMQLKKVISSIQKQTKVKFTFSTNAINAERMVTYSARGKKISDFLNDVLKAYYINYQVVDDQIILYPASVGKTGLPIESGLAVVKPDKTISGVVTNDKGEPLTGVTVAEKNKSNAVITDEKGYYSIRLADENAVLVFSSIGYESQEASIASLLSLNIILKTANKALDEVIVVGYGSQKRSDITGSVASVPKERLSKLPVTNILHAIEGSVAGVNVTQTSSVPGSSAAVLIRGQNTITAGTGPFIVVDGVPFSKSGGGTNDINPNDIASIEILKDASATAIYGVNGANGVILITTKRGIAGKPAIRYNTHVGFDDIAHMLDPSSPQQYVKKYADWFKQVNPTQTQVNVLPNAYEIANYNAGKTVDWLKEVTQQGIFQDHNVSISGGTKDMKYYLSGDYLKQKGAVKGYQYHRASLRSNIDINITDYLTTGTSLSYTNNNYDGGRANFYLAAAMSPYGTLYNAAGGYEIYPMNPELLYTNPLLGLNTDRIDRSNNLTANTYAEIKPGGVLKGLKYRLNTGYTYVTTLLASYTGRNANNTIGSASTSNSETKNWVVENILTYDKNFGAHHIDFTGLYSAQQRNYFATAFNATGFINDELSFNNMGAGATISGGTIFPGQPYTGSYKDKYSLVSQMGRINYSYDSRYLLTVTARRDGSSVMGSNTSKYGVFPSFAAGWNISNEKFLDNVRLINHLKLRTSYGKSGNEAIGVYGTITTAGTVRYPFGGTSNIGVLASNLGNSDLHWETSKTFNVGLDFGILNNKINGSIDIYSTKTEGLLLRRNLPIITGYSFVLDNLGITKNKGIEITLNSDNISTTNFKWQTTVVFSSNKNRIVDLYGDRKSDLGNRWFIGQPINVIYDYKLAGVWQAGDNHAVDPGTKDGDLKFADTNGDNKITPDDRIILGQTAPKWIGGLTNTFRFKNIYLSIFIQTFQGALNNNVTLTYADEAGRMNIPAETGYWTAENKNNSRPSLAYNSGTRGYGYASDNSYTRIKDVTLSYSFAQNLLDKLKLGSLTLYASGRNLYTFTDWIGWDPENNYSFRGSGDWTNNYPLTRSIVFGANITLR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
4 2738541278 Niastella sp. CF465 Isolate Unclassified
5 2738541283 Pedobacter sp. OK701 Isolate Unclassified
6 2738541302 Pedobacter sp. CF074 Isolate Unclassified
7 2738543023 Pedobacter sp. OK628 Isolate Unclassified
8 2739367656 Pedobacter sp. CF523 Isolate Unclassified
9 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
10 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
11 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
12 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
13 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
14 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
15 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
16 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
17 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
18 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
19 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
20 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
21 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
22 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
23 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
24 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
25 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
26 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
27 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
28 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
29 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
30 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
31 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
32 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
33 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
34 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
35 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
36 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
39 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
40 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
41 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
42 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
43 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
48 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
60 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
61 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
62 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
64 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
65 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
79 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
80 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
81 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
84 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
87 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
90 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
91 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
92 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
93 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
94 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
95 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
96 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
97 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
98 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
99 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
100 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
101 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
102 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
103 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
104 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
105 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
106 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
107 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
108 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
109 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
110 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
111 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
112 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
113 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
114 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
115 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
116 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
117 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
118 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
119 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
120 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.06
Metatranscriptomes 0
Isolates 13.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.33
Nodule 0
Rhizoplane 0.61
Rhizosphere 70.91
Stem 0
Stem Tuber 0
Unclassified 15.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_469145 2162886007 Bacteria 8406
2 JGI24735J21928_10000004 3300002067 Bacteria 381713
3 JGI25151J46595_10000001 3300003187 Bacteria 887211
4 JGI25153J46596_10000001 3300003215 Bacteria 748985
5 rootH1_10048627 3300003316 Bacteria 13047
6 rootL2_10064045 3300003322 Bacteria 10495
7 rootL2_10136331 3300003322 Bacteria 3969
8 rootH1_10002648 3300003323 Bacteria 40414
9 rootH1_10021531 3300003323 Bacteria 29001
10 rootH1_10044461 3300003323 Bacteria 10144
11 Ga0065704_10070474 3300005289 Bacteria 23547
12 Ga0070683_100004844 3300005329 Bacteria 11142
13 Ga0070683_100008093 3300005329 Bacteria 8928
14 Ga0070691_10003886 3300005341 Bacteria 6756
15 Ga0070674_100013215 3300005356 Bacteria 5097
16 Ga0070659_100000506 3300005366 Bacteria 28592
17 Ga0070663_100015278 3300005455 Bacteria 4951
18 Ga0068855_100001828 3300005563 Bacteria 26539
19 Ga0068855_100003684 3300005563 Bacteria 18745
20 Ga0068855_100006158 3300005563 Bacteria 14629
21 Ga0068855_100045077 3300005563 Bacteria 5216
22 Ga0068857_100005905 3300005577 Bacteria 10456
23 Ga0068854_100004564 3300005578 Bacteria 8731
24 Ga0068856_100029258 3300005614 Bacteria 5381
25 Ga0068852_100000666 3300005616 Bacteria 22465
26 Ga0068859_100003907 3300005617 Bacteria 15207
27 Ga0075366_10008116 3300006195 Bacteria 5822
28 Ga0075366_10010427 3300006195 Bacteria 5218
29 Ga0075366_10011629 3300006195 Bacteria 4973
30 Ga0075366_10021525 3300006195 Unclassified 3748
31 Ga0097620_100003907 3300006931 Bacteria 15207
32 Ga0105240_10008172 3300009093 Bacteria 15003
33 Ga0105240_10015745 3300009093 Bacteria 10262
34 Ga0105237_10000028 3300009545 Bacteria 201366
35 Ga0105237_10000347 3300009545 Bacteria 65298
36 Ga0105237_10002740 3300009545 Bacteria 21484
37 Ga0105238_10004605 3300009551 Bacteria 13643
38 Ga0105239_10002298 3300010375 Bacteria 24404
39 Ga0105239_10003299 3300010375 Bacteria 19876
40 Ga0105239_10070373 3300010375 Bacteria 3843
41 Ga0157373_10000169 3300013100 Bacteria 53279
42 Ga0157371_10000129 3300013102 Bacteria 115362
43 Ga0157371_10000955 3300013102 Bacteria 32127
44 Ga0157371_10005301 3300013102 Bacteria 10924
45 Ga0157371_10008360 3300013102 Bacteria 8254
46 Ga0157370_10006300 3300013104 Bacteria 13118
47 Ga0157369_10006408 3300013105 Bacteria 13643
48 Ga0157369_10012607 3300013105 Bacteria 9588
49 Ga0157369_10031742 3300013105 Bacteria 5812
50 Ga0157374_10000024 3300013296 Bacteria 265166
51 Ga0163162_10006563 3300013306 Bacteria 11272
52 Ga0157372_10000010 3300013307 Bacteria 300658
53 Ga0157372_10001927 3300013307 Bacteria 22529
54 Ga0157372_10002712 3300013307 Bacteria 19156
55 Ga0157372_10090897 3300013307 Bacteria 3471
56 Ga0157380_10004262 3300014326 Bacteria 9900
57 Ga0157376_10013860 3300014969 Bacteria 6027
58 Ga0182006_1000218 3300015261 Bacteria 55915
59 Ga0207425_1000002 3300025245 Bacteria 1362590
60 Ga0209026_1000694 3300025250 Bacteria 20015
61 Ga0209129_1000002 3300025258 Bacteria 1359086
62 Ga0209676_1000090 3300025292 Bacteria 256336
63 Ga0209025_1000004 3300025294 Bacteria 1361782
64 Ga0209758_1000006 3300025297 Bacteria 1359562
65 Ga0209050_1000091 3300025298 Bacteria 253049
66 Ga0207705_10002430 3300025909 Bacteria 14374
67 Ga0207695_10000089 3300025913 Bacteria 273463
68 Ga0207695_10029189 3300025913 Bacteria 6101
69 Ga0207671_10000554 3300025914 Bacteria 50327
70 Ga0207671_10005291 3300025914 Bacteria 11962
71 Ga0207671_10010271 3300025914 Bacteria 7740
72 Ga0207694_10007686 3300025924 Bacteria 8167
73 Ga0207650_10009737 3300025925 Bacteria 6572
74 Ga0207690_10000810 3300025932 Bacteria 20070
75 Ga0207661_10005346 3300025944 Bacteria 9041
76 Ga0207667_10000211 3300025949 Bacteria 82245
77 Ga0207667_10003747 3300025949 Bacteria 18727
78 Ga0207667_10007204 3300025949 Bacteria 13416
79 Ga0207640_10008385 3300025981 Bacteria 5744
80 Ga0207702_10021888 3300026078 Bacteria 5295
81 Ga0207674_10010551 3300026116 Bacteria 10456
82 Ga0207698_10002367 3300026142 Bacteria 11181
83 Ga0307515_10000002 3300028794 Bacteria 1231751
84 Ga0307515_10000081 3300028794 Bacteria 224753
85 Ga0307515_10001368 3300028794 Bacteria 55146
86 Ga0316183_1006105 3300030742 Bacteria 90612
87 Ga0316181_1211455 3300030744 Bacteria 13698
88 Ga0316182_1282696 3300030745 Unclassified 3058
89 Ga0307408_100000241 3300031548 Bacteria 57327
90 Ga0307408_100000693 3300031548 Bacteria 27699
91 Ga0307516_10000768 3300031730 Bacteria 43795
92 Ga0307405_10000012 3300031731 Bacteria 233774
93 Ga0307416_100000007 3300032002 Bacteria 433284
94 Ga0307414_10004919 3300032004 Bacteria 7306
95 Ga0395899_0000409 3300037312 Bacteria 50188
96 Ga0395898_0014618 3300037466 Bacteria 8062
97 Ga0439449_0003918 3300042007 Bacteria 5772
98 Ga0439457_003917 3300042014 Unclassified 3976
99 Ga0466966_0012847 3300044684 Bacteria 5544
100 Ga0466961_0011873 3300044693 Bacteria 5567
101 Ga0466959_0000056 3300045049 Bacteria 78465
102 Ga0495638_0017007 3300046460 Bacteria 4861
103 Ga0495650_0000119 3300046471 Bacteria 185719
104 Ga0495585_0000071 3300046492 Bacteria 105916
105 Ga0495585_0000390 3300046492 Bacteria 42425
106 Ga0495616_0012724 3300046513 Bacteria 4765
107 Ga0495648_0000232 3300046524 Bacteria 64041
108 Ga0495609_0017568 3300046538 Bacteria 3322
109 Ga0495633_0000006 3300046558 Bacteria 326774
110 Ga0495633_0003055 3300046558 Bacteria 11388
111 Ga0495668_0000011 3300046616 Bacteria 472186
112 Ga0495625_0000017 3300046660 Bacteria 299728
113 Ga0495625_0000239 3300046660 Bacteria 85876
114 Ga0495625_0001362 3300046660 Bacteria 30055
115 Ga0495625_0011555 3300046660 Bacteria 7192
116 Ga0495625_0034858 3300046660 Bacteria 3712
117 Ga0495661_0002035 3300046665 Bacteria 15906
118 Ga0495661_0022277 3300046665 Bacteria 4122
119 Ga0495658_0004062 3300046683 Bacteria 7211
120 Ga0495649_0000008 3300046694 Bacteria 483706
121 Ga0495660_0009951 3300046810 Bacteria 5534
122 Ga0495672_0002059 3300047320 Bacteria 18877
123 Ga0495672_0008078 3300047320 Bacteria 7817
124 Ga0495672_0031349 3300047320 Bacteria 3319
125 Ga0495687_003528 3300047443 Bacteria 11260
126 Ga0495686_0001025 3300047472 Bacteria 33746
127 Ga0495686_0004159 3300047472 Bacteria 12042
128 Ga0495686_0010649 3300047472 Bacteria 6530
129 Ga0495682_0004946 3300049460 Bacteria 5611
130 Ga0501225_0000771 3300049705 Bacteria 10031
131 Ga0501264_000142 3300049761 Bacteria 11319
132 Ga0501044_0008045 3300049823 Bacteria 11581
133 nmdc:mga0k408_10623_c1 3300050493 Bacteria 4985
134 nmdc:mga0k408_273_c3 3300050493 Bacteria 21328
135 nmdc:mga0k408_385_c1 3300050493 Bacteria 24235
136 Ga0500578_0001630 3300053086 Bacteria 21717
137 Ga0500583_0000047 3300053092 Bacteria 78958
138 Ga0500583_0001687 3300053092 Bacteria 6447
139 Ga0500618_000062 3300053125 Bacteria 95871
140 Ga0500568_0000797 3300053139 Bacteria 22235
141 Ga0500622_0000558 3300053156 Bacteria 34124
142 Ga0500611_000028 3300053727 Bacteria 93696

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2919177583 2919179797 794
2 3300047320 Ga0495672_0031349 Ga0495672_0031349_66_2579 795
3 3300025924 Ga0207694_10007686 Ga0207694_100076863 837
4 3300003323 rootH1_10044461 rootH1_100444615 895
5 3300031731 Ga0307405_10000012 Ga0307405_1000001256 905
6 3300015261 Ga0182006_1000218 Ga0182006_10002187 908
7 3300013296 Ga0157374_10000024 Ga0157374_1000002436 911
8 3300014969 Ga0157376_10013860 Ga0157376_100138601 911
9 3300030742 Ga0316183_1006105 Ga0316183_100610512 923
10 3300030744 Ga0316181_1211455 Ga0316181_12114553 923
11 3300030745 Ga0316182_1282696 Ga0316182_12826961 923
12 3300025925 Ga0207650_10009737 Ga0207650_100097373 926
13 3300009545 Ga0105237_10002740 Ga0105237_100027407 928
14 3300010375 Ga0105239_10070373 Ga0105239_100703732 928
15 3300025914 Ga0207671_10005291 Ga0207671_100052915 928
16 3300044693 Ga0466961_0011873 Ga0466961_0011873_479_3460 930
17 3300042007 Ga0439449_0003918 Ga0439449_0003918_1591_4653 932
18 iso_pu_bacteria 2833640130 2833641137 932
19 3300013105 Ga0157369_10012607 Ga0157369_100126076 934
20 3300037466 Ga0395898_0014618 Ga0395898_0014618_536_3598 937
21 3300047320 Ga0495672_0008078 Ga0495672_0008078_2573_6031 939
22 3300005563 Ga0068855_100006158 Ga0068855_1000061586 941
23 3300005577 Ga0068857_100005905 Ga0068857_1000059055 941
24 3300005578 Ga0068854_100004564 Ga0068854_1000045644 941
25 3300005616 Ga0068852_100000666 Ga0068852_10000066613 941
26 3300009093 Ga0105240_10008172 Ga0105240_1000817212 941
27 3300009551 Ga0105238_10004605 Ga0105238_1000460511 941
28 3300025913 Ga0207695_10029189 Ga0207695_100291892 941
29 3300025949 Ga0207667_10003747 Ga0207667_100037478 941
30 3300025981 Ga0207640_10008385 Ga0207640_100083852 941
31 3300026116 Ga0207674_10010551 Ga0207674_100105515 941
32 3300026142 Ga0207698_10002367 Ga0207698_100023675 941
33 3300053139 Ga0500568_0000797 Ga0500568_0000797_3539_6985 943
34 3300013102 Ga0157371_10000955 Ga0157371_1000095517 945
35 3300013307 Ga0157372_10000010 Ga0157372_10000010102 945
36 3300037312 Ga0395899_0000409 Ga0395899_0000409_34693_37719 945
37 3300044684 Ga0466966_0012847 Ga0466966_0012847_1210_4236 945
38 3300013104 Ga0157370_10006300 Ga0157370_100063002 946
39 3300005455 Ga0070663_100015278 Ga0070663_1000152782 950
40 iso_pu_bacteria 2928147474 2928151031 950
41 3300046810 Ga0495660_0009951 Ga0495660_0009951_1505_4435 951
42 3300005563 Ga0068855_100003684 Ga0068855_10000368413 952
43 3300005614 Ga0068856_100029258 Ga0068856_1000292582 952
44 3300025949 Ga0207667_10007204 Ga0207667_100072042 952
45 3300026078 Ga0207702_10021888 Ga0207702_100218882 952
46 3300005366 Ga0070659_100000506 Ga0070659_10000050611 953
47 3300010375 Ga0105239_10002298 Ga0105239_1000229813 953
48 3300025932 Ga0207690_10000810 Ga0207690_1000081010 953
49 3300045049 Ga0466959_0000056 Ga0466959_0000056_2262_5519 953
50 3300031730 Ga0307516_10000768 Ga0307516_1000076810 954
51 3300047472 Ga0495686_0001025 Ga0495686_0001025_8745_11861 956
52 iso_pu_bacteria 2818991460 2819678814 956
53 iso_pu_bacteria 2929177148 2929182267 956
54 iso_pu_bacteria 2884791551 2884792258 957
55 3300049823 Ga0501044_0008045 Ga0501044_0008045_1987_5253 958
56 3300053092 Ga0500583_0001687 Ga0500583_0001687_2629_5895 958
57 3300049705 Ga0501225_0000771 Ga0501225_0000771_1308_4577 959
58 iso_pu_bacteria 2738541283 2738756470 959
59 3300025914 Ga0207671_10000554 Ga0207671_1000055419 960
60 iso_pu_bacteria 2585427687 2586210412 960
61 3300005356 Ga0070674_100013215 Ga0070674_1000132152 961
62 3300014326 Ga0157380_10004262 Ga0157380_100042621 961
63 3300046524 Ga0495648_0000232 Ga0495648_0000232_49282_52272 961
64 3300046660 Ga0495625_0001362 Ga0495625_0001362_19965_22955 961
65 iso_pu_bacteria 2945977869 2945978186 961
66 iso_pu_bacteria 2946013367 2946015953 961
67 3300013102 Ga0157371_10000129 Ga0157371_1000012916 962
68 3300049761 Ga0501264_000142 Ga0501264_000142_6308_9340 962
69 3300003322 rootL2_10136331 rootL2_101363311 963
70 3300005341 Ga0070691_10003886 Ga0070691_100038862 964
71 3300031548 Ga0307408_100000241 Ga0307408_10000024113 964
72 3300031548 Ga0307408_100000693 Ga0307408_10000069314 964
73 3300047320 Ga0495672_0002059 Ga0495672_0002059_11448_14474 964
74 3300003323 rootH1_10021531 rootH1_1002153116 965
75 iso_pu_bacteria 2599185184 2599480893 965
76 iso_pu_bacteria 2738541302 2738853031 965
77 iso_pu_bacteria 2739367656 2739613899 965
78 iso_pu_bacteria 2842722452 2842725664 965
79 iso_pu_bacteria 2842909656 2842914404 965
80 iso_pu_bacteria 2928078545 2928080809 965
81 iso_pu_bacteria 2932082852 2932087614 965
82 iso_pu_bacteria 2954016120 2954018086 965
83 3300005329 Ga0070683_100004844 Ga0070683_1000048446 966
84 3300005563 Ga0068855_100001828 Ga0068855_10000182810 966
85 3300005563 Ga0068855_100045077 Ga0068855_1000450774 966
86 3300009093 Ga0105240_10015745 Ga0105240_100157452 966
87 3300013102 Ga0157371_10005301 Ga0157371_100053013 966
88 3300013105 Ga0157369_10006408 Ga0157369_100064085 966
89 3300013105 Ga0157369_10031742 Ga0157369_100317422 966
90 3300013307 Ga0157372_10001927 Ga0157372_100019274 966
91 3300013307 Ga0157372_10090897 Ga0157372_100908971 966
92 3300025909 Ga0207705_10002430 Ga0207705_100024308 966
93 3300025913 Ga0207695_10000089 Ga0207695_10000089143 966
94 3300025944 Ga0207661_10005346 Ga0207661_100053462 966
95 3300025949 Ga0207667_10000211 Ga0207667_1000021128 966
96 3300042014 Ga0439457_003917 Ga0439457_003917_366_3377 966
97 iso_pu_bacteria 2738543023 2739300219 966
98 3300003323 rootH1_10002648 rootH1_1000264822 967
99 3300002067 JGI24735J21928_10000004 JGI24735J21928_10000004301 968
100 3300003187 JGI25151J46595_10000001 JGI25151J46595_10000001185 968
101 3300003215 JGI25153J46596_10000001 JGI25153J46596_1000000174 968
102 3300003316 rootH1_10048627 rootH1_100486273 968
103 3300003322 rootL2_10064045 rootL2_100640454 968
104 3300005617 Ga0068859_100003907 Ga0068859_1000039076 968
105 3300006195 Ga0075366_10010427 Ga0075366_100104272 968
106 3300006195 Ga0075366_10011629 Ga0075366_100116292 968
107 3300006931 Ga0097620_100003907 Ga0097620_1000039076 968
108 3300009545 Ga0105237_10000347 Ga0105237_100003479 968
109 3300010375 Ga0105239_10003299 Ga0105239_1000329910 968
110 3300013102 Ga0157371_10008360 Ga0157371_100083605 968
111 3300013306 Ga0163162_10006563 Ga0163162_100065633 968
112 3300013307 Ga0157372_10002712 Ga0157372_100027126 968
113 3300025245 Ga0207425_1000002 Ga0207425_1000002556 968
114 3300025258 Ga0209129_1000002 Ga0209129_1000002556 968
115 3300025292 Ga0209676_1000090 Ga0209676_100009074 968
116 3300025294 Ga0209025_1000004 Ga0209025_1000004635 968
117 3300025297 Ga0209758_1000006 Ga0209758_1000006635 968
118 3300025298 Ga0209050_1000091 Ga0209050_100009174 968
119 3300025914 Ga0207671_10010271 Ga0207671_100102716 968
120 3300028794 Ga0307515_10000002 Ga0307515_10000002806 968
121 3300028794 Ga0307515_10000081 Ga0307515_1000008184 968
122 3300032002 Ga0307416_100000007 Ga0307416_10000000736 968
123 3300046460 Ga0495638_0017007 Ga0495638_0017007_1318_4584 968
124 3300046471 Ga0495650_0000119 Ga0495650_0000119_2773_5757 968
125 3300046492 Ga0495585_0000071 Ga0495585_0000071_30870_33854 968
126 3300046492 Ga0495585_0000390 Ga0495585_0000390_19501_22770 968
127 3300046513 Ga0495616_0012724 Ga0495616_0012724_125_3142 968
128 3300046538 Ga0495609_0017568 Ga0495609_0017568_281_3265 968
129 3300046558 Ga0495633_0000006 Ga0495633_0000006_219497_222766 968
130 3300046558 Ga0495633_0003055 Ga0495633_0003055_8308_11328 968
131 3300046616 Ga0495668_0000011 Ga0495668_0000011_79326_82595 968
132 3300046660 Ga0495625_0000017 Ga0495625_0000017_90962_93979 968
133 3300046660 Ga0495625_0000239 Ga0495625_0000239_38343_41612 968
134 3300046660 Ga0495625_0011555 Ga0495625_0011555_320_3589 968
135 3300046665 Ga0495661_0002035 Ga0495661_0002035_9677_12661 968
136 3300046665 Ga0495661_0022277 Ga0495661_0022277_964_3984 968
137 3300046683 Ga0495658_0004062 Ga0495658_0004062_2131_5400 968
138 3300046694 Ga0495649_0000008 Ga0495649_0000008_343398_346415 968
139 3300047443 Ga0495687_003528 Ga0495687_003528_6827_9844 968
140 3300049460 Ga0495682_0004946 Ga0495682_0004946_2169_5438 968
141 3300050493 nmdc:mga0k408_10623_c1 nmdc:mga0k408_10623_c1_298_3312 968
142 3300050493 nmdc:mga0k408_273_c3 nmdc:mga0k408_273_c3_2783_6052 968
143 3300053086 Ga0500578_0001630 Ga0500578_0001630_1899_5165 968
144 3300053092 Ga0500583_0000047 Ga0500583_0000047_25701_28967 968
145 iso_pu_bacteria 2738541278 2738726476 968
146 iso_pu_bacteria 2857627736 2857628516 968
147 3300028794 Ga0307515_10001368 Ga0307515_1000136844 969
148 3300047472 Ga0495686_0004159 Ga0495686_0004159_1045_4032 969
149 3300053727 Ga0500611_000028 Ga0500611_000028_87161_90589 969
150 iso_pu_bacteria 2842903701 2842907238 969
151 3300005329 Ga0070683_100008093 Ga0070683_1000080932 970
152 3300009545 Ga0105237_10000028 Ga0105237_1000002819 970
153 3300013100 Ga0157373_10000169 Ga0157373_100001693 970
154 3300025250 Ga0209026_1000694 Ga0209026_10006946 970
155 3300053125 Ga0500618_000062 Ga0500618_000062_65871_68894 970
156 3300006195 Ga0075366_10008116 Ga0075366_100081162 971
157 3300046660 Ga0495625_0034858 Ga0495625_0034858_675_3671 971
158 3300050493 nmdc:mga0k408_385_c1 nmdc:mga0k408_385_c1_19583_22582 971
159 3300053156 Ga0500622_0000558 Ga0500622_0000558_29613_32609 971
160 3300006195 Ga0075366_10021525 Ga0075366_100215252 973
161 3300047472 Ga0495686_0010649 Ga0495686_0010649_2105_5140 973
162 iso_pu_bacteria 2896317667 2896318872 981
163 2162886007 SwRhRL2b_contig_469145 SwRhRL2b_0454.00000170 985
164 3300005289 Ga0065704_10070474 Ga0065704_100704745 985
165 3300032004 Ga0307414_10004919 Ga0307414_100049192 985

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07715

Plug

TonB-dependent Receptor Plug Domain

259

370

0.96

PF13620

CarboxypepD_reg

Carboxypeptidase regulatory-like domain

170

238

0.94

PF13715

CarbopepD_reg_2

CarboxypepD_reg-like domain

171

252

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
6zlt-assembly1.cif.gz_B-2 open-open state of the bt1762-bt1763 levan transport system 0.8467 112 985
8aa4-assembly1.cif.gz_B susc components of the dextran utilisation system (utilisome) 0.8442 112 985
8aa4-assembly1.cif.gz_B susc components of the dextran utilisation system (utilisome) 0.8426 112 985
8a9y-assembly1.cif.gz_I substrate-free levan utilisation machinery (utilisome) 0.8386 112 985
6sln-assembly1.cif.gz_B structure of the ragab peptide transporter 0.8357 124 985
ID Description Score Start End Superfamily
af_E7FFQ7_314_405_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8747 34 103 2.60.40.1120
af_O54858_508_590_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8352 33 103 2.60.40.1120
af_E7FFQ7_1118_1203_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8318 34 103 2.60.40.1120
af_Q9JHW1_1212_1304_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8292 34 107 2.60.40.1120
af_P91359_377_465_2.60.40.1120 Mainly Beta;Sandwich;Immunoglobulin-like;Carboxypeptidase-like, regulatory domain 0.8277 33 103 2.60.40.1120
ID Description Score Start End GO Terms
AF-A0A5C6HPK9-F1-model_v4 M56 family peptidase 0.9531 32 103 GO:0016020
AF-A0A1Q6IFS7-F1-model_v4 SusC/RagA family TonB-linked outer membrane protein 0.9048 107 985 GO:0009279
AF-A0A495IZH7-F1-model_v4 TonB-linked SusC/RagA family outer membrane protein 0.8977 485 985 GO:0009279
AF-A0A7Y2DED7-F1-model_v4 SusC/RagA family TonB-linked outer membrane protein 0.8935 295 985 GO:0009279
AF-A0A519V4S6-F1-model_v4 TonB-dependent receptor 0.8884 484 985 GO:0009279

Feature Viewer

pLDDT pTM Quality
79.14 0.76 High
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Predicted Structure (AlphaFold2)

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