F246814

General Info

Members Datasets Scaffolds Average Seq Length
165 123 125 759

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0029256|Ga0453684_0029256_16_2457
Length 813
Sequence MQKQKSEGTDNRSAPEGAFFVGGVEIFPFSSSAVTRNLSLFTIFTSNIHDMTKHCLLVLLLPILFSCTITNQPGGFDNPIDLVNPLMGTDSKFSMSNGNTYPAIALPWGMNFWSPQTAKMGDGWMYAYDADKIRGIKQTHQPSPWINDYGQFSLFAVTGKPLFREEERQSWFSHKAEVARPNYYRVYLSDHDVTAEVTPTDRAAAFRFTFPETDSSYVLIDAFNRGSSVTVIPEGNKVIGWTTRNSGGVPENFKNYFVAVFDRPFKVYYTWIDSTLTLSAKEAKGFHTGAVLQFATRRGDKVGVKVASSFISPEQAQVNLEREIGSKTFDQVEAEGEKIWNNELSRIKIYDSNIDHVRTFYSCLYRVLLFPRKFYEISTSKDTMHYSPYNGQVLPGVMFTDNGFWDTFRAVFPFFTLMYPDQNSLIMQGLVNTYKESGWLPEWASPGHRDCMIGSNSASLIADSYLKGIRGYDINTLYEAILKNTQGNGPMSSVGRLGAGYYNDLGFIPYDVGINENTARTLEYAYADFCISELAKVLGRPQEEIDLFRKRSQNYRNVFDSDSNLMRGRNRDRSFQSPFSPYKWGDAFTEGNSWHYTWSVFHDIEGLKQLMGGNGPFVQMLDSVFIVPPVFDCSYYGYPIHEITEMQVAGMGNYAHGNQPIQHMIYLYNYAGQPWKTQQHVREVLTRLYMPTPDGYCGDEDNGQTSAWYVFSSLGFYPVCPGRPEYVIGSPLFEKAVLEMPGGKSLTIESKGVATGPCIQSAKVNGKSLQQSFFTQQQLLNGGKINYLMGAEPNKKLWTDAESYPSSVTKVKQ

Samples

Sample ID Description Type Environment
1 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
2 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
3 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
4 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
5 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
6 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
7 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
8 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
9 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
10 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
11 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
12 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
13 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
14 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
15 2738541278 Niastella sp. CF465 Isolate Unclassified
16 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
17 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
18 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
19 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
20 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
21 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
22 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
23 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
24 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
25 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
26 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
27 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
28 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
29 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
30 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
31 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
32 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
33 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
34 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
35 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
36 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
37 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
38 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
39 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
40 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
41 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
42 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
43 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
44 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
45 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
46 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
47 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
48 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
49 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
50 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
51 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
52 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
53 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
54 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
55 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
56 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
57 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
58 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
60 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
61 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
64 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
65 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
66 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
67 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
68 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
69 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
70 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
76 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
78 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
87 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
88 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
89 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
92 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
93 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
96 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
97 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
98 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
99 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
100 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
103 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
104 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
105 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
106 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
107 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
108 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
109 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
110 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
111 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
112 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
113 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
119 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
120 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
121 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
122 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
123 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.76
Metatranscriptomes 0
Isolates 24.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.76
Nodule 0.61
Rhizoplane 0
Rhizosphere 60
Stem 0
Stem Tuber 0
Unclassified 23.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1001156 3300001915 Bacteria 7788
2 rootH1_10015462 3300003323 Bacteria 13434
3 JGI25160J50197_1000705 3300003354 Bacteria 18398
4 Ga0055536_1006402 3300003781 Bacteria 5512
5 Ga0055528_1000344 3300003790 Bacteria 38443
6 Ga0055530_10000916 3300003791 Bacteria 24228
7 Ga0065165_1000053 3300005262 Bacteria 189081
8 Ga0065165_1000422 3300005262 Bacteria 66792
9 Ga0065704_10072264 3300005289 Bacteria 8831
10 Ga0070682_100000055 3300005337 Bacteria 112566
11 Ga0070668_100020833 3300005347 Bacteria 4952
12 Ga0070673_100040173 3300005364 Bacteria 3587
13 Ga0070698_100045187 3300005471 Bacteria 4508
14 Ga0070664_100007392 3300005564 Bacteria 8862
15 Ga0068857_100039262 3300005577 Bacteria 4193
16 Ga0075428_100046497 3300006844 Bacteria 4767
17 Ga0075429_100000557 3300006880 Bacteria 28537
18 Ga0105244_10000005 3300009036 Bacteria 481412
19 Ga0114129_10004479 3300009147 Bacteria 19696
20 Ga0105243_10000021 3300009148 Bacteria 213782
21 Ga0105237_10054539 3300009545 Bacteria 4005
22 Ga0105239_10031081 3300010375 Bacteria 5874
23 Ga0157370_10007273 3300013104 Bacteria 12084
24 Ga0157370_10053398 3300013104 Bacteria 3853
25 Ga0157378_10013484 3300013297 Bacteria 7147
26 Ga0157375_10042172 3300013308 Bacteria 4414
27 Ga0182006_1000001 3300015261 Bacteria 1091090
28 Ga0182005_1000098 3300015265 Bacteria 66185
29 Ga0209436_101356 3300025208 Bacteria 8659
30 Ga0209436_103216 3300025208 Bacteria 4443
31 Ga0209646_1000002 3300025246 Bacteria 1425781
32 Ga0209026_1000500 3300025250 Bacteria 28524
33 Ga0209148_1000090 3300025254 Bacteria 250982
34 Ga0209673_1000034 3300025273 Bacteria 328788
35 Ga0209675_1000066 3300025291 Bacteria 171883
36 Ga0209676_1000990 3300025292 Bacteria 33715
37 Ga0209564_1005058 3300025295 Bacteria 7704
38 Ga0209758_1002894 3300025297 Bacteria 16577
39 Ga0209050_1000349 3300025298 Bacteria 89255
40 Ga0207426_1000190 3300025302 Bacteria 152568
41 Ga0207426_1000233 3300025302 Bacteria 127848
42 Ga0209257_1000001 3300025304 Bacteria 2274655
43 Ga0209257_1001743 3300025304 Bacteria 24147
44 Ga0207655_1000016 3300025728 Bacteria 551476
45 Ga0207655_1000045 3300025728 Bacteria 315397
46 Ga0207709_10000120 3300025935 Bacteria 119178
47 Ga0207691_10016507 3300025940 Bacteria 7010
48 Ga0207668_10016037 3300025972 Bacteria 4667
49 Ga0207658_10003388 3300025986 Bacteria 11283
50 Ga0207702_10047769 3300026078 Bacteria 3608
51 Ga0207674_10014981 3300026116 Bacteria 8541
52 Ga0307517_10012032 3300028786 Bacteria 11939
53 Ga0307511_10002902 3300030521 Bacteria 17761
54 Ga0265327_10026953 3300031251 Bacteria 3317
55 Ga0265327_10036654 3300031251 Bacteria 2693
56 Ga0307516_10002288 3300031730 Bacteria 25839
57 Ga0307412_10000027 3300031911 Bacteria 214663
58 Ga0307411_10000008 3300032005 Bacteria 321575
59 Ga0400489_89020 3300039093 Bacteria 3426
60 Ga0439449_0003239 3300042007 Bacteria 6351
61 Ga0451577_0000030 3300042876 Bacteria 391423
62 Ga0451577_0003783 3300042876 Bacteria 16479
63 Ga0451577_0004661 3300042876 Bacteria 14399
64 Ga0451577_0009610 3300042876 Bacteria 9284
65 Ga0451577_0033602 3300042876 Bacteria 4624
66 Ga0451577_0065425 3300042876 Bacteria 3243
67 Ga0466969_0000114 3300044656 Bacteria 42943
68 Ga0466972_0010461 3300044658 Bacteria 4660
69 Ga0453683_0000010 3300044673 Bacteria 470890
70 Ga0453683_0000126 3300044673 Bacteria 113390
71 Ga0453683_0000136 3300044673 Bacteria 107540
72 Ga0453683_0002356 3300044673 Bacteria 14778
73 Ga0453683_0002908 3300044673 Bacteria 12951
74 Ga0453683_0015443 3300044673 Bacteria 4945
75 Ga0453683_0045188 3300044673 Bacteria 2762
76 Ga0466966_0000089 3300044684 Bacteria 56410
77 Ga0453684_0000167 3300044712 Bacteria 290200
78 Ga0453684_0000461 3300044712 Bacteria 162371
79 Ga0453684_0000598 3300044712 Bacteria 133485
80 Ga0453684_0001421 3300044712 Bacteria 68890
81 Ga0453684_0010867 3300044712 Bacteria 15426
82 Ga0453684_0014296 3300044712 Bacteria 12725
83 Ga0453684_0029256 3300044712 Bacteria 7834
84 Ga0453684_0072691 3300044712 Bacteria 4340
85 Ga0453684_0075498 3300044712 Bacteria 4236
86 Ga0453684_0110160 3300044712 Bacteria 3347
87 Ga0453684_0151465 3300044712 Bacteria 2755
88 Ga0453684_0151466 3300044712 Bacteria 2755
89 Ga0453684_0213477 3300044712 Bacteria 2241
90 Ga0466959_0000031 3300045049 Bacteria 111271
91 Ga0451576_0000172 3300045051 Bacteria 162376
92 Ga0451576_0000329 3300045051 Bacteria 114749
93 Ga0451576_0001443 3300045051 Bacteria 40486
94 Ga0451576_0007013 3300045051 Bacteria 13625
95 Ga0451576_0013256 3300045051 Bacteria 9225
96 Ga0451576_0035562 3300045051 Bacteria 5283
97 Ga0451576_0154075 3300045051 Bacteria 2397
98 Ga0495633_0000175 3300046558 Bacteria 83653
99 Ga0495668_0003408 3300046616 Bacteria 11940
100 Ga0495625_0032115 3300046660 Bacteria 3898
101 Ga0496116_0000029 3300048919 Bacteria 422187
102 Ga0496117_0000007 3300048920 Bacteria 720505
103 Ga0496118_0000104 3300048921 Bacteria 157435
104 Ga0496119_0000007 3300048922 Bacteria 475920
105 Ga0496122_0000089 3300048925 Bacteria 206107
106 Ga0496122_0000151 3300048925 Bacteria 162224
107 Ga0496122_0000153 3300048925 Bacteria 161087
108 Ga0496123_0001269 3300048926 Bacteria 36177
109 Ga0496124_0001030 3300048927 Bacteria 44126
110 Ga0496125_0002635 3300048928 Bacteria 22978
111 Ga0496125_0014052 3300048928 Bacteria 7825
112 Ga0496126_0002751 3300048929 Bacteria 23221
113 Ga0496126_0012507 3300048929 Bacteria 8689
114 Ga0501047_0012029 3300049581 Bacteria 8190
115 Ga0501047_0038322 3300049581 Bacteria 4638
116 Ga0501266_000004 3300049763 Bacteria 356286
117 Ga0501044_0021849 3300049823 Bacteria 6823
118 nmdc:mga05p37_37905_c1 3300050507 Bacteria 5551
119 Ga0500578_0000119 3300053086 Bacteria 95584
120 Ga0500644_0000099 3300053088 Bacteria 54817
121 Ga0500583_0000324 3300053092 Bacteria 16126
122 Ga0500569_000090 3300053109 Bacteria 14410
123 Ga0500616_0006001 3300053153 Bacteria 8085
124 Ga0500622_0000171 3300053156 Bacteria 70062
125 Ga0500622_0001144 3300053156 Bacteria 22146

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042876 Ga0451577_0065425 Ga0451577_0065425_57_2030 657
2 3300044712 Ga0453684_0213477 Ga0453684_0213477_26_2107 693
3 3300015261 Ga0182006_1000001 Ga0182006_1000001632 726
4 3300044712 Ga0453684_0000598 Ga0453684_0000598_4292_6499 729
5 3300042876 Ga0451577_0033602 Ga0451577_0033602_293_2512 736
6 3300006844 Ga0075428_100046497 Ga0075428_1000464972 741
7 3300006880 Ga0075429_100000557 Ga0075429_1000005576 741
8 iso_pu_bacteria 2738541279 2738736321 744
9 iso_pu_bacteria 2738541285 2738768764 744
10 iso_pu_bacteria 2738543007 2739217903 744
11 3300044712 Ga0453684_0075498 Ga0453684_0075498_940_3303 745
12 3300053156 Ga0500622_0000171 Ga0500622_0000171_17262_19529 745
13 3300049581 Ga0501047_0012029 Ga0501047_0012029_3772_6024 746
14 3300044712 Ga0453684_0000167 Ga0453684_0000167_237801_240083 747
15 3300044712 Ga0453684_0151465 Ga0453684_0151465_101_2374 747
16 3300044712 Ga0453684_0151466 Ga0453684_0151466_101_2374 747
17 3300049581 Ga0501047_0038322 Ga0501047_0038322_968_3286 751
18 3300049823 Ga0501044_0021849 Ga0501044_0021849_2973_5264 752
19 iso_pu_bacteria 2511231000 2511231357 752
20 iso_pu_bacteria 2522125168 2522549880 752
21 iso_pu_bacteria 2582581281 2585157375 752
22 iso_pu_bacteria 2582581282 2585161644 752
23 iso_pu_bacteria 2585428060 2587746454 752
24 iso_pu_bacteria 2588254257 2590609984 752
25 iso_pu_bacteria 2842083920 2842087167 752
26 iso_pu_bacteria 2905999023 2905999204 752
27 iso_pu_bacteria 2919399522 2919401470 752
28 iso_pu_bacteria 2946019816 2946023864 752
29 iso_pu_bacteria 2585428095 2587866178 753
30 iso_pu_bacteria 2818991442 2819573181 754
31 iso_pu_bacteria 2821136567 2821136600 754
32 iso_pu_bacteria 2904467357 2904468655 754
33 iso_pu_bacteria 2929239360 2929240783 754
34 iso_pu_bacteria 2929921140 2929922830 754
35 3300003781 Ga0055536_1006402 Ga0055536_10064023 755
36 3300005262 Ga0065165_1000422 Ga0065165_100042255 755
37 3300013104 Ga0157370_10053398 Ga0157370_100533982 755
38 3300025292 Ga0209676_1000990 Ga0209676_10009908 755
39 3300031251 Ga0265327_10026953 Ga0265327_100269532 755
40 3300044673 Ga0453683_0000126 Ga0453683_0000126_81888_84200 755
41 3300044712 Ga0453684_0110160 Ga0453684_0110160_925_3237 755
42 3300045051 Ga0451576_0000329 Ga0451576_0000329_14668_16980 755
43 3300045051 Ga0451576_0001443 Ga0451576_0001443_11559_13871 755
44 3300045051 Ga0451576_0154075 Ga0451576_0154075_31_2340 755
45 iso_pu_bacteria 2738541273 2738699685 755
46 iso_pu_bacteria 2738541278 2738729089 755
47 iso_pu_bacteria 2738543014 2739253434 755
48 iso_pu_bacteria 2818991460 2819677448 755
49 iso_pu_bacteria 2840677318 2840677898 755
50 iso_pu_bacteria 2884791551 2884797374 755
51 iso_pu_bacteria 2896085136 2896085715 755
52 iso_pu_bacteria 2896109856 2896113941 755
53 iso_pu_bacteria 2929177148 2929183521 755
54 iso_pu_bacteria 2945977869 2945979484 755
55 3300005364 Ga0070673_100040173 Ga0070673_1000401731 756
56 3300005564 Ga0070664_100007392 Ga0070664_1000073923 756
57 3300013297 Ga0157378_10013484 Ga0157378_100134842 756
58 3300013308 Ga0157375_10042172 Ga0157375_100421723 756
59 3300025940 Ga0207691_10016507 Ga0207691_100165073 756
60 3300025986 Ga0207658_10003388 Ga0207658_100033887 756
61 3300031911 Ga0307412_10000027 Ga0307412_10000027146 756
62 3300042876 Ga0451577_0004661 Ga0451577_0004661_4648_6927 756
63 3300044673 Ga0453683_0000136 Ga0453683_0000136_60864_63143 756
64 3300044712 Ga0453684_0014296 Ga0453684_0014296_8065_10344 756
65 3300044712 Ga0453684_0072691 Ga0453684_0072691_1362_3674 756
66 3300045051 Ga0451576_0007013 Ga0451576_0007013_9896_12175 756
67 3300049763 Ga0501266_000004 Ga0501266_000004_200260_202542 756
68 iso_pu_bacteria 2582581278 2585141092 756
69 iso_pu_bacteria 2585428045 2587677020 756
70 iso_pu_bacteria 2585428182 2588211283 756
71 iso_pu_bacteria 2585428183 2588215654 756
72 iso_pu_bacteria 2585428184 2588219064 756
73 iso_pu_bacteria 2588254255 2590602981 756
74 iso_pu_bacteria 2765235839 2765575468 756
75 iso_pu_bacteria 2772190705 2772604955 756
76 iso_pu_bacteria 2816332188 2816875312 756
77 iso_pu_bacteria 2871720351 2871722654 756
78 iso_pu_bacteria 2889290771 2889294025 756
79 3300005289 Ga0065704_10072264 Ga0065704_100722646 757
80 3300013104 Ga0157370_10007273 Ga0157370_100072732 757
81 3300025728 Ga0207655_1000045 Ga0207655_1000045258 757
82 3300032005 Ga0307411_10000008 Ga0307411_10000008135 757
83 3300042876 Ga0451577_0000030 Ga0451577_0000030_309337_311622 757
84 3300042876 Ga0451577_0009610 Ga0451577_0009610_6885_9203 757
85 3300044673 Ga0453683_0002356 Ga0453683_0002356_1151_3517 757
86 3300044673 Ga0453683_0015443 Ga0453683_0015443_1186_3501 757
87 3300044673 Ga0453683_0045188 Ga0453683_0045188_22_2307 757
88 3300044712 Ga0453684_0000461 Ga0453684_0000461_79802_82087 757
89 3300044712 Ga0453684_0001421 Ga0453684_0001421_38964_41279 757
90 3300044712 Ga0453684_0010867 Ga0453684_0010867_1389_3677 757
91 3300044712 Ga0453684_0029256 Ga0453684_0029256_16_2457 757
92 3300045051 Ga0451576_0000172 Ga0451576_0000172_80276_82561 757
93 3300045051 Ga0451576_0035562 Ga0451576_0035562_2268_4583 757
94 3300046660 Ga0495625_0032115 Ga0495625_0032115_1305_3665 757
95 3300010375 Ga0105239_10031081 Ga0105239_100310815 758
96 3300015265 Ga0182005_1000098 Ga0182005_100009820 758
97 3300025208 Ga0209436_101356 Ga0209436_1013564 758
98 3300025208 Ga0209436_103216 Ga0209436_1032162 758
99 3300025254 Ga0209148_1000090 Ga0209148_1000090202 758
100 3300025302 Ga0207426_1000233 Ga0207426_100023366 758
101 3300025304 Ga0209257_1000001 Ga0209257_10000011862 758
102 3300030521 Ga0307511_10002902 Ga0307511_1000290216 758
103 3300031251 Ga0265327_10036654 Ga0265327_100366541 758
104 3300031730 Ga0307516_10002288 Ga0307516_1000228817 758
105 3300039093 Ga0400489_89020 Ga0400489_89020_804_3107 758
106 3300042007 Ga0439449_0003239 Ga0439449_0003239_3097_5388 758
107 3300042876 Ga0451577_0003783 Ga0451577_0003783_11678_13966 758
108 3300044658 Ga0466972_0010461 Ga0466972_0010461_1651_3942 758
109 3300044673 Ga0453683_0000010 Ga0453683_0000010_377939_380227 758
110 3300044673 Ga0453683_0002908 Ga0453683_0002908_10601_12886 758
111 3300045051 Ga0451576_0013256 Ga0451576_0013256_2789_5077 758
112 3300046558 Ga0495633_0000175 Ga0495633_0000175_17273_19561 758
113 3300048929 Ga0496126_0012507 Ga0496126_0012507_5981_8323 758
114 3300053088 Ga0500644_0000099 Ga0500644_0000099_43736_46024 758
115 3300053109 Ga0500569_000090 Ga0500569_000090_5215_7503 758
116 3300053153 Ga0500616_0006001 Ga0500616_0006001_3207_5495 758
117 3300053156 Ga0500622_0001144 Ga0500622_0001144_6744_9032 758
118 3300003323 rootH1_10015462 rootH1_100154623 759
119 3300003354 JGI25160J50197_1000705 JGI25160J50197_100070511 759
120 3300003790 Ga0055528_1000344 Ga0055528_100034418 759
121 3300003791 Ga0055530_10000916 Ga0055530_100009165 759
122 3300005262 Ga0065165_1000053 Ga0065165_1000053122 759
123 3300005471 Ga0070698_100045187 Ga0070698_1000451874 759
124 3300025273 Ga0209673_1000034 Ga0209673_100003474 759
125 3300025298 Ga0209050_1000349 Ga0209050_100034921 759
126 3300025304 Ga0209257_1001743 Ga0209257_100174311 759
127 3300046616 Ga0495668_0003408 Ga0495668_0003408_4354_6654 759
128 3300053086 Ga0500578_0000119 Ga0500578_0000119_5057_7375 759
129 3300053092 Ga0500583_0000324 Ga0500583_0000324_56_2347 759
130 3300001915 JGI24741J21665_1001156 JGI24741J21665_10011564 760
131 3300005337 Ga0070682_100000055 Ga0070682_10000005595 760
132 3300005347 Ga0070668_100020833 Ga0070668_1000208332 760
133 3300005577 Ga0068857_100039262 Ga0068857_1000392622 760
134 3300009036 Ga0105244_10000005 Ga0105244_10000005230 760
135 3300009147 Ga0114129_10004479 Ga0114129_1000447914 760
136 3300009148 Ga0105243_10000021 Ga0105243_10000021112 760
137 3300009545 Ga0105237_10054539 Ga0105237_100545392 760
138 3300025246 Ga0209646_1000002 Ga0209646_1000002108 760
139 3300025250 Ga0209026_1000500 Ga0209026_100050010 760
140 3300025291 Ga0209675_1000066 Ga0209675_100006645 760
141 3300025295 Ga0209564_1005058 Ga0209564_10050585 760
142 3300025297 Ga0209758_1002894 Ga0209758_10028949 760
143 3300025302 Ga0207426_1000190 Ga0207426_100019067 760
144 3300025728 Ga0207655_1000016 Ga0207655_1000016229 760
145 3300025935 Ga0207709_10000120 Ga0207709_1000012072 760
146 3300025972 Ga0207668_10016037 Ga0207668_100160372 760
147 3300026078 Ga0207702_10047769 Ga0207702_100477692 760
148 3300026116 Ga0207674_10014981 Ga0207674_100149813 760
149 3300028786 Ga0307517_10012032 Ga0307517_100120325 760
150 3300044656 Ga0466969_0000114 Ga0466969_0000114_15186_17480 760
151 3300044684 Ga0466966_0000089 Ga0466966_0000089_51701_53995 760
152 3300045049 Ga0466959_0000031 Ga0466959_0000031_99607_101901 760
153 3300048919 Ga0496116_0000029 Ga0496116_0000029_320007_322289 760
154 3300048920 Ga0496117_0000007 Ga0496117_0000007_318306_320588 760
155 3300048921 Ga0496118_0000104 Ga0496118_0000104_6104_8386 760
156 3300048922 Ga0496119_0000007 Ga0496119_0000007_318373_320655 760
157 3300048925 Ga0496122_0000089 Ga0496122_0000089_81026_83308 760
158 3300048925 Ga0496122_0000151 Ga0496122_0000151_73631_75913 760
159 3300048925 Ga0496122_0000153 Ga0496122_0000153_57777_60059 760
160 3300048926 Ga0496123_0001269 Ga0496123_0001269_1433_3715 760
161 3300048927 Ga0496124_0001030 Ga0496124_0001030_40714_42996 760
162 3300048928 Ga0496125_0002635 Ga0496125_0002635_6334_8616 760
163 3300048928 Ga0496125_0014052 Ga0496125_0014052_1126_3408 760
164 3300048929 Ga0496126_0002751 Ga0496126_0002751_9930_12212 760
165 3300050507 nmdc:mga05p37_37905_c1 nmdc:mga05p37_37905_c1_510_2804 760

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17678

Glyco_hydro_92N

Glycosyl hydrolase family 92 N-terminal domain

82

309

0.97

PF07971

Glyco_hydro_92

Glycosyl hydrolase family 92 catalytic domain

315

791

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ww0-assembly3.cif.gz_C structure of the family gh92 inverting mannosidase bt3990 from bacteroides thetaiotaomicron vpi-5482 0.9831 22 756
2wvx-assembly2.cif.gz_B structure of the family gh92 inverting mannosidase bt3990 from bacteroides thetaiotaomicron vpi-5482 0.9831 22 756
2ww0-assembly3.cif.gz_C structure of the family gh92 inverting mannosidase bt3990 from bacteroides thetaiotaomicron vpi-5482 0.9792 22 756
2wvx-assembly2.cif.gz_B structure of the family gh92 inverting mannosidase bt3990 from bacteroides thetaiotaomicron vpi-5482 0.9791 22 756
6dwo-assembly4.cif.gz_D crystal structure of alpha-1-2-mannosidase from enterococcus faecalis v583 0.9669 24 754
ID Description Score Start End Superfamily
2wvxA01 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5; 0.9761 24 341 2.70.98.10
2wvxD02 Alpha Beta;2-Layer Sandwich;GH92 mannosidase fold;GH92 mannosidase domain 0.9717 609 748 3.30.2080.10
2wvyB01 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5; 0.9709 20 344 2.70.98.10
2wvzB04 Mainly Alpha;Up-down Bundle;Glycosyl hydrolase family fold;alpha-1,2-mannosidases domains 0.9595 442 607 1.20.1610.10
af_A0A1D8PT50_639_782_3.30.2080.10 Alpha Beta;2-Layer Sandwich;GH92 mannosidase fold;GH92 mannosidase domain 0.9556 602 740 3.30.2080.10
ID Description Score Start End GO Terms
AF-A0A4Q3BQR7-F1-model_v4 Glycoside hydrolase family 92 protein 0.9938 648 754 GO:0000224
GO:0005829
GO:0006516
AF-A0A162ND84-F1-model_v4 Alpha-mannosidase 0.986 154 754 GO:0000224
GO:0005829
GO:0005975
GO:0006516
GO:0030246
AF-A0A7C7MJF7-F1-model_v4 Glycoside hydrolase family 92 protein 0.9856 17 755 GO:0000224
GO:0005829
GO:0005975
GO:0006516
GO:0030246
AF-A0A101J2J9-F1-model_v4 Alpha-1,2-mannosidase 0.9851 64 754 GO:0000224
GO:0005829
GO:0005975
GO:0006516
GO:0030246
AF-A0A4Q3EDA5-F1-model_v4 Glycoside hydrolase family 92 protein 0.9851 610 756 GO:0000224
GO:0005829
GO:0005975
GO:0006516

Feature Viewer

pLDDT pTM Quality
88.04 0.91 High
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Predicted Structure (AlphaFold2)

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