F246595

General Info

Members Datasets Scaffolds Average Seq Length
165 129 330 239

Family's Representative Sequence

Representative Sequence 3300035398|Ga0316574_0017205|Ga0316574_0017205_1413_2246
Length 277
Sequence VRARATAATAQRGEVVLAAKGLSCGYGQMSVVRDLDLPVVAGEVAALIGPNGAGKTTTLLTLAGELAPLGGEVEWMGEPTTEPMHRRCQRGLSYVTEERSVIMGLSALDNLRLAGVPVERATALFPELGRLLKRPAGLLSGGEQQMLTVARALGREPSVLLVDELSLGLAPLVVERLLEAVRAASEERAVGVLLVEQRVRQALAVADRVYVMQRGQIVLAGTTEEIGAQLSEIEAAYLAAESTDGEGGRTAGPSLPSDQPQSQTNHHESQSEQGNHA

Samples

Sample ID Description Type Environment
1 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
2 3300000652 Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
21 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
22 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
23 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
24 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
41 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
56 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
57 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
58 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
59 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
60 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
61 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
62 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
63 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
68 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
69 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
70 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
71 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
72 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
73 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
74 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
75 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
76 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
77 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
78 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
79 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
83 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
84 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
98 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
99 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
100 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
101 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
102 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
103 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
104 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
105 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
106 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
109 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
110 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
113 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
118 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
119 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
120 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
121 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
122 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
123 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
124 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
125 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
126 2738541305 Nocardioides sp. CF167 Isolate Unclassified
127 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
128 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
129 8002775197 Frankia nepalensis CN7 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 97.58
Metatranscriptomes 0
Isolates 2.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.94
Nodule 0.61
Rhizoplane 4.85
Rhizosphere 70.91
Stem 0
Stem Tuber 0
Unclassified 2.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316574_0017205 3300035398 Bacteria 4227
2 ARCol0yngRDRAFT_1002222 3300000652 Bacteria 1485
3 JGI25406J46586_10028855 3300003203 Bacteria 2108
4 Ga0070666_10017206 3300005335 Bacteria 4634
5 Ga0070667_100001914 3300005367 Bacteria 18466
6 Ga0070667_100001929 3300005367 Bacteria 18397
7 Ga0070667_100017757 3300005367 Bacteria 5897
8 Ga0070714_100027683 3300005435 Bacteria 4696
9 Ga0070713_100021018 3300005436 Bacteria 5012
10 Ga0070710_10000011 3300005437 Bacteria 130416
11 Ga0070711_100168543 3300005439 Bacteria 1667
12 Ga0070685_10230621 3300005466 Bacteria 1217
13 Ga0070665_100021823 3300005548 Bacteria 6438
14 Ga0068857_100492927 3300005577 Bacteria 1149
15 Ga0068859_100341604 3300005617 Bacteria 1591
16 Ga0068864_100166358 3300005618 Bacteria 2008
17 Ga0068858_100013437 3300005842 Bacteria 7725
18 Ga0068860_100067819 3300005843 Bacteria 3389
19 Ga0068860_100166342 3300005843 Bacteria 2129
20 Ga0081455_10423326 3300005937 Bacteria 918
21 Ga0081539_10019774 3300005985 Bacteria 4591
22 Ga0075365_10085955 3300006038 Bacteria 2137
23 Ga0075365_10300512 3300006038 Bacteria 1130
24 Ga0075365_10481282 3300006038 Bacteria 877
25 Ga0075368_10027248 3300006042 Bacteria 2203
26 Ga0075363_100015568 3300006048 Bacteria 3740
27 Ga0075363_100095318 3300006048 Bacteria 1641
28 Ga0075363_100160584 3300006048 Bacteria 1272
29 Ga0075364_10054785 3300006051 Bacteria 2608
30 Ga0075364_10061496 3300006051 Bacteria 2463
31 Ga0075364_10153665 3300006051 Bacteria 1551
32 Ga0075367_10041230 3300006178 Bacteria 2698
33 Ga0075367_10083597 3300006178 Bacteria 1934
34 Ga0075370_10047640 3300006353 Bacteria 2427
35 Ga0075370_10061127 3300006353 Bacteria 2146
36 Ga0075428_100207724 3300006844 Bacteria 2116
37 Ga0075428_101096651 3300006844 Bacteria 841
38 Ga0075430_100046327 3300006846 Bacteria 3672
39 Ga0075431_100078732 3300006847 Bacteria 3402
40 Ga0075429_100207925 3300006880 Unclassified 1715
41 Ga0097620_100341604 3300006931 Bacteria 1591
42 Ga0075435_100177473 3300007076 Bacteria 1799
43 Ga0105245_10012840 3300009098 Bacteria 7298
44 Ga0114129_10023808 3300009147 Bacteria 8680
45 Ga0114129_10734564 3300009147 Bacteria 1265
46 Ga0105248_10384263 3300009177 Bacteria 1581
47 Ga0105249_10348599 3300009553 Bacteria 1499
48 Ga0163162_11040350 3300013306 Bacteria 926
49 Ga0163163_10179494 3300014325 Bacteria 2164
50 Ga0157380_10379406 3300014326 Bacteria 1334
51 Ga0157376_10280285 3300014969 Bacteria 1569
52 Ga0213876_10041678 3300021384 Bacteria 2426
53 Ga0213875_10005822 3300021388 Bacteria 6556
54 Ga0213875_10162436 3300021388 Unclassified 1048
55 Ga0207692_10000001 3300025898 Bacteria 558345
56 Ga0207700_10081728 3300025928 Bacteria 2524
57 Ga0207661_10344928 3300025944 Bacteria 1343
58 Ga0207679_10427772 3300025945 Bacteria 1170
59 Ga0207658_10004110 3300025986 Bacteria 10147
60 Ga0207658_10252330 3300025986 Bacteria 1500
61 Ga0207677_10126512 3300026023 Bacteria 1932
62 Ga0207677_10385216 3300026023 Bacteria 1184
63 Ga0207703_10018296 3300026035 Bacteria 5472
64 Ga0209983_1056504 3300027665 Bacteria 863
65 Ga0209813_10010430 3300027866 Bacteria 2403
66 Ga0268266_10000824 3300028379 Bacteria 40580
67 Ga0268265_10447493 3300028380 Unclassified 1206
68 Ga0268264_10008595 3300028381 Bacteria 8484
69 Ga0265314_10171289 3300031711 Bacteria 1310
70 Ga0316576_10087249 3300031727 Bacteria 2322
71 Ga0307405_10002111 3300031731 Bacteria 8663
72 Ga0307413_10079605 3300031824 Bacteria 2095
73 Ga0307410_10041569 3300031852 Bacteria 3033
74 Ga0307406_10117359 3300031901 Bacteria 1843
75 Ga0307406_10175346 3300031901 Bacteria 1556
76 Ga0307407_10057676 3300031903 Bacteria 2254
77 Ga0307412_10007272 3300031911 Bacteria 6280
78 Ga0307409_100000532 3300031995 Bacteria 16458
79 Ga0307409_100387239 3300031995 Bacteria 1331
80 Ga0307416_100002579 3300032002 Bacteria 10467
81 Ga0307415_100000144 3300032126 Bacteria 31695
82 Ga0373925_0072991 3300037068 Bacteria 2596
83 Ga0436364_1228354 3300037853 Bacteria 24667
84 Ga0436364_1314602 3300037853 Unclassified 1572
85 Ga0395901_0633026 3300038443 Bacteria 1075
86 Ga0436365_0467625 3300039437 Bacteria 4215
87 Ga0451793_1834013 3300041452 Bacteria 873
88 Ga0466967_0668395 3300045976 Bacteria 1028
89 Ga0495672_0013595 3300047320 Bacteria 5607
90 Ga0496102_0001195 3300048905 Bacteria 23557
91 Ga0496103_0005330 3300048906 Bacteria 7707
92 Ga0496104_0037082 3300048907 Bacteria 4559
93 Ga0496106_0310272 3300048909 Bacteria 1266
94 Ga0496107_0058723 3300048910 Bacteria 2782
95 Ga0496111_0410433 3300048914 Bacteria 1000
96 Ga0496114_0415287 3300048917 Bacteria 1192
97 Ga0496116_0319098 3300048919 Bacteria 729
98 Ga0496117_0003217 3300048920 Bacteria 19302
99 Ga0496118_0001368 3300048921 Bacteria 36749
100 Ga0496119_0059817 3300048922 Bacteria 2285
101 Ga0496121_0161084 3300048924 Bacteria 1640
102 Ga0496124_0052277 3300048927 Bacteria 3471
103 Ga0496126_0046538 3300048929 Bacteria 3978
104 Ga0501031_0018906 3300049568 Bacteria 4485
105 Ga0501031_0248663 3300049568 Bacteria 1156
106 Ga0501032_0057667 3300049569 Bacteria 2609
107 Ga0501036_0028609 3300049572 Bacteria 4709
108 Ga0501037_0030716 3300049573 Bacteria 3969
109 Ga0501038_0011778 3300049574 Bacteria 7979
110 Ga0501039_0023553 3300049575 Bacteria 4725
111 Ga0501040_0025826 3300049576 Bacteria 3951
112 Ga0501041_0094711 3300049577 Bacteria 1845
113 Ga0501042_0013877 3300049578 Bacteria 5488
114 Ga0501043_0070029 3300049579 Bacteria 2755
115 Ga0501046_0029390 3300049580 Bacteria 4468
116 Ga0501048_0015372 3300049582 Bacteria 5652
117 Ga0501048_0466074 3300049582 Bacteria 905
118 Ga0501068_0058256 3300049584 Bacteria 2343
119 Ga0501068_0086672 3300049584 Bacteria 1928
120 Ga0501068_0168659 3300049584 Bacteria 1381
121 Ga0501070_0089890 3300049586 Bacteria 2541
122 Ga0501070_0124647 3300049586 Bacteria 2129
123 Ga0501071_0014546 3300049587 Bacteria 5383
124 Ga0501072_0020990 3300049588 Bacteria 5063
125 Ga0501072_0071785 3300049588 Bacteria 2736
126 Ga0501072_0472784 3300049588 Bacteria 992
127 Ga0501073_0028850 3300049589 Bacteria 3965
128 Ga0501074_0158666 3300049590 Bacteria 1615
129 Ga0501074_0247866 3300049590 Bacteria 1267
130 Ga0501075_0015660 3300049591 Bacteria 5445
131 Ga0501076_0002863 3300049592 Bacteria 11939
132 Ga0501076_0139937 3300049592 Bacteria 1966
133 Ga0501077_0001664 3300049593 Bacteria 13370
134 Ga0501079_0002892 3300049741 Bacteria 12542
135 Ga0501079_0199439 3300049741 Bacteria 1563
136 Ga0501080_0009760 3300049742 Bacteria 8770
137 Ga0501081_0090116 3300049743 Bacteria 2155
138 Ga0501081_0210887 3300049743 Bacteria 1411
139 Ga0501083_0117300 3300049744 Bacteria 1747
140 Ga0501045_0006074 3300049824 Bacteria 8366
141 nmdc:mga00v17_133349_c1 3300050491 Bacteria 1589
142 nmdc:mga00v17_5059_c1 3300050491 Bacteria 6920
143 nmdc:mga06z11_59944_c1 3300050494 Bacteria 1980
144 nmdc:mga07m45_108708_c1 3300050496 Bacteria 1596
145 nmdc:mga07m45_29301_c1 3300050496 Bacteria 3043
146 nmdc:mga05p37_56281_c1 3300050507 Bacteria 4842
147 nmdc:mga0qj67_38985_c1 3300050509 Bacteria 3729
148 nmdc:mga06r32_119456_c1 3300050510 Bacteria 2599
149 nmdc:mga06r32_181089_c1 3300050510 Bacteria 2093
150 nmdc:mga08y16_227665_c1 3300050511 Bacteria 1929
151 nmdc:mga0rr50_635153_c1 3300050513 Bacteria 911
152 Ga0495619_0326463 3300053085 Bacteria 1062
153 Ga0500641_0006101 3300053096 Bacteria 4271
154 Ga0500554_008182 3300053102 Bacteria 2445
155 Ga0500568_0000032 3300053139 Bacteria 147655
156 Ga0501084_0006408 3300054114 Bacteria 9675
157 Ga0501082_0020178 3300060353 Bacteria 5744
158 Ga0501082_0021696 3300060353 Bacteria 5536
159 Ga0501082_0182168 3300060353 Bacteria 1827
160 Ga0501082_0335690 3300060353 Bacteria 1317
161 Ga0530510_0135598 3300061734 Bacteria 1812
162 2738870782 2738541305 Bacteria 4910150
163 2812331625 2811994874 Bacteria 5367947
164 2862509765 2862507626 Bacteria 9425308
165 8002775361 8002775197 Bacteria 10728764
166 Ga0316574_0017205
167 ARCol0yngRDRAFT_1002222
168 JGI25406J46586_10028855
169 Ga0070666_10017206
170 Ga0070667_100001914
171 Ga0070667_100001929
172 Ga0070667_100017757
173 Ga0070714_100027683
174 Ga0070713_100021018
175 Ga0070710_10000011
176 Ga0070711_100168543
177 Ga0070685_10230621
178 Ga0070665_100021823
179 Ga0068857_100492927
180 Ga0068859_100341604
181 Ga0068864_100166358
182 Ga0068858_100013437
183 Ga0068860_100067819
184 Ga0068860_100166342
185 Ga0081455_10423326
186 Ga0081539_10019774
187 Ga0075365_10085955
188 Ga0075365_10300512
189 Ga0075365_10481282
190 Ga0075368_10027248
191 Ga0075363_100015568
192 Ga0075363_100095318
193 Ga0075363_100160584
194 Ga0075364_10054785
195 Ga0075364_10061496
196 Ga0075364_10153665
197 Ga0075367_10041230
198 Ga0075367_10083597
199 Ga0075370_10047640
200 Ga0075370_10061127
201 Ga0075428_100207724
202 Ga0075428_101096651
203 Ga0075430_100046327
204 Ga0075431_100078732
205 Ga0075429_100207925
206 Ga0097620_100341604
207 Ga0075435_100177473
208 Ga0105245_10012840
209 Ga0114129_10023808
210 Ga0114129_10734564
211 Ga0105248_10384263
212 Ga0105249_10348599
213 Ga0163162_11040350
214 Ga0163163_10179494
215 Ga0157380_10379406
216 Ga0157376_10280285
217 Ga0213876_10041678
218 Ga0213875_10005822
219 Ga0213875_10162436
220 Ga0207692_10000001
221 Ga0207700_10081728
222 Ga0207661_10344928
223 Ga0207679_10427772
224 Ga0207658_10004110
225 Ga0207658_10252330
226 Ga0207677_10126512
227 Ga0207677_10385216
228 Ga0207703_10018296
229 Ga0209983_1056504
230 Ga0209813_10010430
231 Ga0268266_10000824
232 Ga0268265_10447493
233 Ga0268264_10008595
234 Ga0265314_10171289
235 Ga0316576_10087249
236 Ga0307405_10002111
237 Ga0307413_10079605
238 Ga0307410_10041569
239 Ga0307406_10117359
240 Ga0307406_10175346
241 Ga0307407_10057676
242 Ga0307412_10007272
243 Ga0307409_100000532
244 Ga0307409_100387239
245 Ga0307416_100002579
246 Ga0307415_100000144
247 Ga0373925_0072991
248 Ga0436364_1228354
249 Ga0436364_1314602
250 Ga0395901_0633026
251 Ga0436365_0467625
252 Ga0451793_1834013
253 Ga0466967_0668395
254 Ga0495672_0013595
255 Ga0496102_0001195
256 Ga0496103_0005330
257 Ga0496104_0037082
258 Ga0496106_0310272
259 Ga0496107_0058723
260 Ga0496111_0410433
261 Ga0496114_0415287
262 Ga0496116_0319098
263 Ga0496117_0003217
264 Ga0496118_0001368
265 Ga0496119_0059817
266 Ga0496121_0161084
267 Ga0496124_0052277
268 Ga0496126_0046538
269 Ga0501031_0018906
270 Ga0501031_0248663
271 Ga0501032_0057667
272 Ga0501036_0028609
273 Ga0501037_0030716
274 Ga0501038_0011778
275 Ga0501039_0023553
276 Ga0501040_0025826
277 Ga0501041_0094711
278 Ga0501042_0013877
279 Ga0501043_0070029
280 Ga0501046_0029390
281 Ga0501048_0015372
282 Ga0501048_0466074
283 Ga0501068_0058256
284 Ga0501068_0086672
285 Ga0501068_0168659
286 Ga0501070_0089890
287 Ga0501070_0124647
288 Ga0501071_0014546
289 Ga0501072_0020990
290 Ga0501072_0071785
291 Ga0501072_0472784
292 Ga0501073_0028850
293 Ga0501074_0158666
294 Ga0501074_0247866
295 Ga0501075_0015660
296 Ga0501076_0002863
297 Ga0501076_0139937
298 Ga0501077_0001664
299 Ga0501079_0002892
300 Ga0501079_0199439
301 Ga0501080_0009760
302 Ga0501081_0090116
303 Ga0501081_0210887
304 Ga0501083_0117300
305 Ga0501045_0006074
306 nmdc:mga00v17_133349_c1
307 nmdc:mga00v17_5059_c1
308 nmdc:mga06z11_59944_c1
309 nmdc:mga07m45_108708_c1
310 nmdc:mga07m45_29301_c1
311 nmdc:mga05p37_56281_c1
312 nmdc:mga0qj67_38985_c1
313 nmdc:mga06r32_119456_c1
314 nmdc:mga06r32_181089_c1
315 nmdc:mga08y16_227665_c1
316 nmdc:mga0rr50_635153_c1
317 Ga0495619_0326463
318 Ga0500641_0006101
319 Ga0500554_008182
320 Ga0500568_0000032
321 Ga0501084_0006408
322 Ga0501082_0020178
323 Ga0501082_0021696
324 Ga0501082_0182168
325 Ga0501082_0335690
326 Ga0530510_0135598
327 2738870782
328 2812331625
329 2862509765
330 8002775361

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

32

166

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6b89-assembly1.cif.gz_A e. coli lptb in complex with adp and novobiocin 0.9228 16 242
1ji0-assembly1.cif.gz_A crystal structure analysis of the abc transporter from thermotoga maritima 0.9174 13 245
5x41-assembly1.cif.gz_B 3.5a resolution structure of a cobalt energy-coupling factor transporter using lcp method-cbimqo 0.915 13 243
1g6h-assembly1.cif.gz_A crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter 0.9096 14 241
1g9x-assembly3.cif.gz_C characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter 0.907 14 241
ID Description Score Start End Superfamily
af_Q58664_1_235_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.947 16 242 3.40.50.300
af_P22731_1_237_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9469 13 245 3.40.50.300
af_P0A9S7_4_254_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9299 14 245 3.40.50.300
af_P22731_1_237_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9281 13 245 3.40.50.300
af_A1ZBS3_1241_1472_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9209 16 236 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A381SD12-F1-model_v4 ABC transporter domain-containing protein 0.9601 37 245 GO:0005524
GO:0015658
GO:0015807
GO:0016887
AF-A0A1F7LUM7-F1-model_v4 ABC transporter domain-containing protein 0.9553 15 244 GO:0005524
GO:0015658
GO:0015807
GO:0016887
AF-A0A382XKN7-F1-model_v4 ABC transporter domain-containing protein 0.9543 18 226 GO:0005524
GO:0015658
GO:0015807
GO:0016887
AF-A0A7W1WM10-F1-model_v4 ABC transporter ATP-binding protein 0.948 16 243 GO:0005524
GO:0015658
GO:0015807
GO:0016887
AF-A0A3N6MLS5-F1-model_v4 ABC transporter ATP-binding protein 0.9467 14 247 GO:0005524
GO:0005886
GO:0016887

Map