F246313

General Info

Members Datasets Scaffolds Average Seq Length
165 127 330 790

Family's Representative Sequence

Representative Sequence 3300025919|Ga0207657_10036298|Ga0207657_100362982
Length 819
Sequence MRGAARDQLPTASLRRGFFVSMDRYDPNAIEEKWQRIWEDARAFYVSNPEPGAVDEPHWYQLEMLPYPSGILHMGHVLNYTMGDVVTHFRRRHGWRVLRPMGYDSFGLPAENAAINDGVDPRESTERNIVNIRAQMKRLGWAIDWDREVSTHDPDFYRWTQWLFLRFFEAGLAYRKEAPVNWCPNDQTVLANEQVINGHCDRCGAEVELRKLAQWFFKITDYADELLTYELPPGGEWPERTMTIQRNWIGRSEGAEVDFRIADLDVDVSVFTTRPDTLFGATFFVLAPEHPLVDEILARSPDAIELRDYVRHAGAKPAEERAAAEEKTGVFTGFYATNPVNDAPIPIWVADYVLMDYGTGAIMAVPAHDERDEAFATTFGLPIVQVIGEDGRLVQSGQFTGLPADEAKQAIVALLAEQGRGKPTVNYRLRDWSFSRQRYWGAPIPIVYCDDCGLVAVPDDELPLLLPEVEDYRPKGQPPLASNHEWMHVACPKCGKDGVREADTMDTFVDSAWYFLRYVDPHDDNAPFDRAAVDYWLPVSQYIGGIDHATGHLLYSRFFVKVLNDMGMLGFREPFARLFHQGWVQQGGTKMSKSKGNVTGPDALAREYGADAVRLYILFMGPADQDMEWTPDGIDGMSRFVRRLWRIVLEVCEAPASNAALTGPLARKAHETIARVSDDIGRRFQFNTPIAAVMELVNELSKAEVSDPAARFAAETAVSLIQPYAPHVAEELWQRLGHERLWEHPWPVADESFLERQTFELGVQVNGKVRDRFEVDADLPESELVARALASSRVQAHLNGAEPAKTIVVPGKLVNLVIA

Samples

Sample ID Description Type Environment
1 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
48 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
49 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
50 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
53 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
54 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
55 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
61 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
62 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
63 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
64 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
65 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
66 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
67 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
68 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
69 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
70 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
71 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
72 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
73 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
74 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
75 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
76 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
77 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
82 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
83 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
84 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
85 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
86 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
87 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
88 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
89 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
90 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
91 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
92 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
93 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
94 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
95 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
96 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
97 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
100 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
101 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
102 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
103 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
104 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
108 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
111 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
118 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
119 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
120 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
121 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
122 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
123 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
124 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
125 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
126 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
127 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 16.36
Rhizosphere 83.64
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207657_10036298 3300025919 Bacteria 4412
2 JGI25407J50210_10004860 3300003373 Bacteria 3280
3 Ga0070658_10035685 3300005327 Bacteria 4006
4 Ga0070680_100049054 3300005336 Bacteria 3441
5 Ga0070660_100047547 3300005339 Bacteria 3293
6 Ga0070689_100012894 3300005340 Bacteria 6034
7 Ga0070661_100048981 3300005344 Bacteria 3094
8 Ga0070674_100010533 3300005356 Bacteria 5595
9 Ga0070673_100028543 3300005364 Bacteria 4151
10 Ga0070688_100002386 3300005365 Bacteria 9486
11 Ga0070701_10005742 3300005438 Bacteria 5159
12 Ga0070700_100013353 3300005441 Bacteria 4612
13 Ga0070708_100010188 3300005445 Bacteria 7608
14 Ga0070685_10013425 3300005466 Bacteria 4320
15 Ga0070706_100079895 3300005467 Bacteria 3028
16 Ga0070707_100022860 3300005468 Bacteria 5912
17 Ga0070698_100041185 3300005471 Bacteria 4743
18 Ga0070699_100037638 3300005518 Bacteria 4189
19 Ga0070679_100119704 3300005530 Bacteria 2618
20 Ga0068853_100031178 3300005539 Bacteria 4509
21 Ga0070672_100029577 3300005543 Bacteria 4109
22 Ga0068859_100035770 3300005617 Bacteria 4984
23 Ga0081455_10029270 3300005937 Bacteria 5022
24 Ga0081455_10029754 3300005937 Bacteria 4974
25 Ga0081455_10043333 3300005937 Bacteria 3937
26 Ga0081538_10000283 3300005981 Bacteria 58086
27 Ga0081538_10000301 3300005981 Bacteria 56945
28 Ga0081538_10000773 3300005981 Bacteria 35006
29 Ga0081538_10004461 3300005981 Bacteria 12895
30 Ga0081538_10011297 3300005981 Bacteria 7245
31 Ga0075430_100004834 3300006846 Bacteria 11341
32 Ga0075429_100003487 3300006880 Bacteria 13418
33 Ga0097620_100035771 3300006931 Bacteria 4984
34 Ga0111539_10084288 3300009094 Bacteria 3737
35 Ga0105245_10020843 3300009098 Bacteria 5746
36 Ga0105243_10038500 3300009148 Bacteria 3723
37 Ga0105242_10055961 3300009176 Bacteria 3227
38 Ga0105249_10005574 3300009553 Bacteria 10886
39 Ga0157374_10024637 3300013296 Bacteria 5395
40 Ga0163162_10037773 3300013306 Bacteria 4820
41 Ga0157375_10056173 3300013308 Bacteria 3885
42 Ga0207684_10005535 3300025910 Bacteria 11630
43 Ga0207707_10028893 3300025912 Bacteria 4846
44 Ga0207693_10022987 3300025915 Bacteria 4951
45 Ga0207660_10031990 3300025917 Bacteria 3627
46 Ga0207657_10019424 3300025919 Bacteria 6453
47 Ga0207646_10004210 3300025922 Bacteria 15749
48 Ga0207686_10021399 3300025934 Bacteria 3711
49 Ga0207665_10021015 3300025939 Bacteria 4290
50 Ga0207708_10000500 3300026075 Bacteria 30176
51 Ga0207702_10037066 3300026078 Bacteria 4080
52 Ga0207648_10029516 3300026089 Bacteria 4863
53 Ga0207683_10007453 3300026121 Bacteria 9383
54 Ga0265318_10000561 3300028577 Bacteria 26198
55 Ga0265332_10003270 3300031238 Bacteria 7874
56 Ga0265320_10010107 3300031240 Bacteria 5640
57 Ga0265340_10002903 3300031247 Bacteria 9758
58 Ga0265313_10002358 3300031595 Bacteria 16470
59 Ga0373945_0001559 3300035116 Bacteria 7019
60 Ga0373935_0014724 3300035692 Bacteria 4721
61 Ga0373947_0001443 3300035725 Bacteria 14620
62 Ga0395899_0078666 3300037312 Bacteria 2403
63 Ga0395900_0018021 3300037418 Bacteria 7209
64 Ga0395900_0029393 3300037418 Bacteria 5638
65 Ga0395898_0004112 3300037466 Bacteria 15952
66 Ga0395898_0004508 3300037466 Bacteria 15219
67 Ga0395898_0015057 3300037466 Bacteria 7939
68 Ga0395905_0004713 3300037471 Bacteria 14091
69 Ga0395905_0016181 3300037471 Bacteria 7088
70 Ga0395905_0086425 3300037471 Bacteria 2939
71 Ga0395901_0005239 3300038443 Bacteria 13088
72 Ga0395901_0018508 3300038443 Bacteria 7111
73 Ga0395901_0031696 3300038443 Bacteria 5450
74 Ga0395901_0098201 3300038443 Bacteria 3070
75 Ga0451807_2416240 3300041486 Bacteria 3639
76 Ga0466972_0003560 3300044658 Bacteria 7738
77 Ga0466966_0006297 3300044684 Bacteria 7852
78 Ga0466963_0062352 3300044694 Bacteria 2494
79 Ga0466964_0001241 3300044706 Bacteria 8654
80 Ga0466971_0009273 3300044719 Bacteria 4299
81 Ga0466960_0012910 3300044901 Bacteria 3538
82 Ga0466959_0024514 3300045049 Bacteria 4469
83 Ga0466967_0001089 3300045976 Bacteria 15033
84 Ga0466967_0032812 3300045976 Bacteria 4389
85 Ga0466967_0036023 3300045976 Bacteria 4220
86 Ga0495603_0004724 3300046455 Bacteria 8137
87 Ga0495641_0002944 3300046461 Bacteria 13116
88 Ga0495651_0031862 3300046462 Bacteria 4111
89 Ga0495653_0021292 3300046463 Bacteria 5253
90 Ga0495653_0032810 3300046463 Bacteria 4119
91 Ga0495582_0000240 3300046473 Bacteria 30558
92 Ga0495582_0027814 3300046473 Bacteria 3101
93 Ga0495639_0000881 3300046475 Bacteria 13588
94 Ga0495662_0011225 3300046476 Bacteria 4379
95 Ga0495608_0015928 3300046511 Bacteria 5204
96 Ga0495618_0005544 3300046514 Bacteria 7683
97 Ga0495630_0018403 3300046517 Bacteria 5133
98 Ga0495630_0028428 3300046517 Bacteria 4154
99 Ga0495666_0033451 3300046526 Bacteria 2511
100 Ga0495652_0021776 3300046529 Bacteria 5700
101 Ga0495665_0005890 3300046531 Bacteria 6600
102 Ga0495586_0006471 3300046535 Bacteria 6255
103 Ga0495587_0020264 3300046536 Bacteria 4105
104 Ga0495667_0017779 3300046559 Bacteria 4803
105 Ga0495667_0033141 3300046559 Bacteria 3457
106 Ga0495634_0026603 3300046642 Bacteria 4036
107 Ga0495623_0018948 3300046679 Bacteria 4443
108 Ga0495658_0000782 3300046683 Bacteria 17147
109 Ga0495613_0004334 3300046689 Bacteria 10627
110 Ga0495624_0007397 3300046690 Bacteria 7708
111 Ga0495600_0020677 3300046809 Bacteria 4209
112 Ga0495581_0002313 3300047315 Bacteria 10737
113 Ga0495676_0000116 3300047321 Bacteria 61181
114 Ga0495680_0036469 3300047322 Bacteria 3946
115 Ga0495680_0061451 3300047322 Bacteria 2890
116 Ga0495684_0011074 3300047471 Bacteria 6971
117 Ga0495684_0023569 3300047471 Bacteria 4732
118 Ga0495614_0003570 3300048089 Bacteria 6970
119 Ga0496100_0031728 3300048903 Bacteria 3287
120 Ga0496101_0001684 3300048904 Bacteria 13245
121 Ga0496101_0015885 3300048904 Bacteria 5080
122 Ga0496101_0042440 3300048904 Bacteria 3247
123 Ga0496102_0032863 3300048905 Bacteria 4662
124 Ga0496104_0026675 3300048907 Bacteria 5338
125 Ga0496105_0001600 3300048908 Bacteria 16035
126 Ga0496106_0003240 3300048909 Bacteria 12174
127 Ga0496106_0015004 3300048909 Bacteria 5733
128 Ga0496107_0001643 3300048910 Bacteria 13948
129 Ga0496107_0014645 3300048910 Bacteria 5491
130 Ga0496107_0017909 3300048910 Bacteria 4986
131 Ga0496107_0044850 3300048910 Bacteria 3179
132 Ga0496108_0006925 3300048911 Bacteria 9175
133 Ga0496108_0044674 3300048911 Bacteria 3698
134 Ga0496109_0013027 3300048912 Bacteria 7191
135 Ga0496110_0002333 3300048913 Bacteria 14192
136 Ga0496111_0067765 3300048914 Bacteria 2593
137 Ga0496112_0025291 3300048915 Bacteria 5700
138 Ga0496112_0035056 3300048915 Bacteria 4884
139 Ga0496112_0059814 3300048915 Bacteria 3754
140 Ga0496113_0014164 3300048916 Bacteria 5431
141 Ga0496114_0050387 3300048917 Bacteria 3465
142 Ga0496115_0000431 3300048918 Bacteria 33991
143 Ga0496115_0001960 3300048918 Bacteria 14690
144 Ga0496115_0021508 3300048918 Bacteria 4985
145 Ga0501031_0009769 3300049568 Bacteria 6246
146 Ga0501038_0025225 3300049574 Bacteria 5299
147 Ga0501040_0009524 3300049576 Bacteria 6336
148 Ga0501042_0000396 3300049578 Bacteria 22075
149 Ga0501047_0029223 3300049581 Bacteria 5316
150 Ga0501048_0015691 3300049582 Bacteria 5589
151 Ga0501070_0000499 3300049586 Bacteria 35735
152 Ga0501075_0001798 3300049591 Bacteria 14117
153 Ga0501075_0049608 3300049591 Bacteria 3155
154 Ga0501076_0000767 3300049592 Bacteria 20726
155 Ga0501081_0036078 3300049743 Bacteria 3370
156 nmdc:mga05p37_2512_c1 3300050507 Bacteria 21327
157 nmdc:mga05p37_5166_c1 3300050507 Bacteria 14287
158 nmdc:mga09592_1697_c1 3300050508 Bacteria 17777
159 nmdc:mga0a205_65172_c1 3300050515 Bacteria 3519
160 Ga0495601_0035819 3300053077 Bacteria 3099
161 Ga0495595_0014248 3300053084 Bacteria 3369
162 Ga0495619_0001120 3300053085 Bacteria 17601
163 Ga0495619_0053114 3300053085 Bacteria 2679
164 Ga0530510_0002828 3300061734 Bacteria 11937
165 Ga0530510_0072210 3300061734 Bacteria 2505
166 Ga0207657_10036298
167 JGI25407J50210_10004860
168 Ga0070658_10035685
169 Ga0070680_100049054
170 Ga0070660_100047547
171 Ga0070689_100012894
172 Ga0070661_100048981
173 Ga0070674_100010533
174 Ga0070673_100028543
175 Ga0070688_100002386
176 Ga0070701_10005742
177 Ga0070700_100013353
178 Ga0070708_100010188
179 Ga0070685_10013425
180 Ga0070706_100079895
181 Ga0070707_100022860
182 Ga0070698_100041185
183 Ga0070699_100037638
184 Ga0070679_100119704
185 Ga0068853_100031178
186 Ga0070672_100029577
187 Ga0068859_100035770
188 Ga0081455_10029270
189 Ga0081455_10029754
190 Ga0081455_10043333
191 Ga0081538_10000283
192 Ga0081538_10000301
193 Ga0081538_10000773
194 Ga0081538_10004461
195 Ga0081538_10011297
196 Ga0075430_100004834
197 Ga0075429_100003487
198 Ga0097620_100035771
199 Ga0111539_10084288
200 Ga0105245_10020843
201 Ga0105243_10038500
202 Ga0105242_10055961
203 Ga0105249_10005574
204 Ga0157374_10024637
205 Ga0163162_10037773
206 Ga0157375_10056173
207 Ga0207684_10005535
208 Ga0207707_10028893
209 Ga0207693_10022987
210 Ga0207660_10031990
211 Ga0207657_10019424
212 Ga0207646_10004210
213 Ga0207686_10021399
214 Ga0207665_10021015
215 Ga0207708_10000500
216 Ga0207702_10037066
217 Ga0207648_10029516
218 Ga0207683_10007453
219 Ga0265318_10000561
220 Ga0265332_10003270
221 Ga0265320_10010107
222 Ga0265340_10002903
223 Ga0265313_10002358
224 Ga0373945_0001559
225 Ga0373935_0014724
226 Ga0373947_0001443
227 Ga0395899_0078666
228 Ga0395900_0018021
229 Ga0395900_0029393
230 Ga0395898_0004112
231 Ga0395898_0004508
232 Ga0395898_0015057
233 Ga0395905_0004713
234 Ga0395905_0016181
235 Ga0395905_0086425
236 Ga0395901_0005239
237 Ga0395901_0018508
238 Ga0395901_0031696
239 Ga0395901_0098201
240 Ga0451807_2416240
241 Ga0466972_0003560
242 Ga0466966_0006297
243 Ga0466963_0062352
244 Ga0466964_0001241
245 Ga0466971_0009273
246 Ga0466960_0012910
247 Ga0466959_0024514
248 Ga0466967_0001089
249 Ga0466967_0032812
250 Ga0466967_0036023
251 Ga0495603_0004724
252 Ga0495641_0002944
253 Ga0495651_0031862
254 Ga0495653_0021292
255 Ga0495653_0032810
256 Ga0495582_0000240
257 Ga0495582_0027814
258 Ga0495639_0000881
259 Ga0495662_0011225
260 Ga0495608_0015928
261 Ga0495618_0005544
262 Ga0495630_0018403
263 Ga0495630_0028428
264 Ga0495666_0033451
265 Ga0495652_0021776
266 Ga0495665_0005890
267 Ga0495586_0006471
268 Ga0495587_0020264
269 Ga0495667_0017779
270 Ga0495667_0033141
271 Ga0495634_0026603
272 Ga0495623_0018948
273 Ga0495658_0000782
274 Ga0495613_0004334
275 Ga0495624_0007397
276 Ga0495600_0020677
277 Ga0495581_0002313
278 Ga0495676_0000116
279 Ga0495680_0036469
280 Ga0495680_0061451
281 Ga0495684_0011074
282 Ga0495684_0023569
283 Ga0495614_0003570
284 Ga0496100_0031728
285 Ga0496101_0001684
286 Ga0496101_0015885
287 Ga0496101_0042440
288 Ga0496102_0032863
289 Ga0496104_0026675
290 Ga0496105_0001600
291 Ga0496106_0003240
292 Ga0496106_0015004
293 Ga0496107_0001643
294 Ga0496107_0014645
295 Ga0496107_0017909
296 Ga0496107_0044850
297 Ga0496108_0006925
298 Ga0496108_0044674
299 Ga0496109_0013027
300 Ga0496110_0002333
301 Ga0496111_0067765
302 Ga0496112_0025291
303 Ga0496112_0035056
304 Ga0496112_0059814
305 Ga0496113_0014164
306 Ga0496114_0050387
307 Ga0496115_0000431
308 Ga0496115_0001960
309 Ga0496115_0021508
310 Ga0501031_0009769
311 Ga0501038_0025225
312 Ga0501040_0009524
313 Ga0501042_0000396
314 Ga0501047_0029223
315 Ga0501048_0015691
316 Ga0501070_0000499
317 Ga0501075_0001798
318 Ga0501075_0049608
319 Ga0501076_0000767
320 Ga0501081_0036078
321 nmdc:mga05p37_2512_c1
322 nmdc:mga05p37_5166_c1
323 nmdc:mga09592_1697_c1
324 nmdc:mga0a205_65172_c1
325 Ga0495601_0035819
326 Ga0495595_0014248
327 Ga0495619_0001120
328 Ga0495619_0053114
329 Ga0530510_0002828
330 Ga0530510_0072210

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

63

207

0.96

PF13603

tRNA-synt_1_2

Leucyl-tRNA synthetase, editing domain

246

416

0.93

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

541

638

0.88

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

33

249

0.86

PF08264

Anticodon_1

Anticodon-binding domain of tRNA ligase

665

785

0.85

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

422

630

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
4k48-assembly1.cif.gz_A structure of the streptococcus pneumoniae leucyl-trna synthetase editing domain 0.9395 233 417
5on3-assembly1.cif.gz_A quaternary complex of mutant t252a of e. coli leucyl-trna synthetase with trna(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation 0.925 1 815
5on3-assembly1.cif.gz_A quaternary complex of mutant t252a of e. coli leucyl-trna synthetase with trna(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation 0.9228 1 815
4cqn-assembly1.cif.gz_A crystal structure of the e.coli leurs-trna complex with the non- cognate isoleucyl adenylate analogue 0.919 1 815
4cqn-assembly1.cif.gz_A crystal structure of the e.coli leurs-trna complex with the non- cognate isoleucyl adenylate analogue 0.9168 1 815
ID Description Score Start End Superfamily
3zjtA05 Alpha Beta;Roll;Ubiquitin-like (UB roll); 0.9738 757 815 3.10.20.590
af_Q2FXH2_743_805_3.10.20.590 Alpha Beta;Roll;Ubiquitin-like (UB roll); 0.9662 756 815 3.10.20.590
4cqnD04 Mainly Alpha;Orthogonal Bundle;Isoleucyl-tRNA Synthetase; Domain 1;Isoleucyl-tRNA Synthetase; Domain 1 0.9437 587 754 1.10.730.10
3zgzD02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9423 37 576 3.40.50.620
1obhA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9397 36 594 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A7Y1YWY4-F1-model_v4 Leucine--tRNA ligase 0.9587 752 815 GO:0004812
GO:0005524
GO:0006418
AF-A0A832V1T2-F1-model_v4 leucine--tRNA ligase (EC 6.1.1.4) 0.9572 228 362 GO:0002161
GO:0004823
GO:0005524
GO:0005829
GO:0006429
AF-A0A2V2KZ02-F1-model_v4 deleted 0.9563 100 226
AF-A0A7C6U194-F1-model_v4 leucine--tRNA ligase (EC 6.1.1.4) 0.9525 1 164 GO:0004823
GO:0005524
GO:0005829
GO:0006429
AF-A0A832V1T2-F1-model_v4 leucine--tRNA ligase (EC 6.1.1.4) 0.9504 228 362 GO:0002161
GO:0004823
GO:0005524
GO:0005829
GO:0006429

Map