F244580

General Info

Members Datasets Scaffolds Average Seq Length
164 128 328 303

Family's Representative Sequence

Representative Sequence 3300046492|Ga0495585_0085308|Ga0495585_0085308_307_1383
Length 358
Sequence MRAKNGALTSFKQAYTGYSVELPAKNSLKDNTHARTFFMTRITTPFGFHSTARDVIDGVDLTGKRAIVTGGAAGIGIETARALVNAGADVTLAVRRPDAAEKIAATLQEEGKGKVDVRLIDLADISSVTSFAESWSGPLHILVNNAGIMALPERELTLQGCEMQFATNFLGHFALVLGLQEALIQAEGARVVSLSSNAILLGPVVFDDINFDFRNYEPFASYSQAKTACALIAVEITRRWADRGIFANSLNPGAIATNLQKHTGGLKTPVERQKTVQQGAATSVLLAASPLLEGIGGRYFEDCNEARIVHKRPADYTGVAPYAIDPDNAQRLWKVATRMLGQEDDCVSNDQGEGCRPW

Samples

Sample ID Description Type Environment
1 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
15 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
30 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
35 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
36 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
45 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
46 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
47 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
67 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
68 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
69 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
72 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
73 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
74 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
75 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
76 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
77 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
78 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
79 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
80 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
81 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
82 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
83 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
84 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
85 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
86 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
87 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
88 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
89 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
90 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
91 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
92 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
93 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
94 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
95 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
96 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
97 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
105 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
106 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
107 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
108 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
109 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
110 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
113 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
114 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
115 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
116 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
117 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
118 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
121 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
122 2558860280 Kutzneria sp. 744 Isolate Unclassified
123 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
124 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
125 2687453737 Frankia sp. BMG5.36 Isolate Nodule
126 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
127 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
128 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.51
Metatranscriptomes 0.61
Isolates 4.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.32
Nodule 0.61
Rhizoplane 9.76
Rhizosphere 76.22
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495585_0085308 3300046492 Bacteria 1707
2 LJQas_1004283 3300000549 Bacteria 1866
3 JGI25152J39213_1002024 3300002773 Bacteria 7992
4 JGI25151J46595_10002667 3300003187 Bacteria 10462
5 rootH2_10021680 3300003320 Bacteria 22242
6 rootH1_10128421 3300003323 Bacteria 3854
7 Ga0068869_100244104 3300005334 Bacteria 1432
8 Ga0070682_100009193 3300005337 Bacteria 5587
9 Ga0068868_100190791 3300005338 Bacteria 1704
10 Ga0070667_100395625 3300005367 Bacteria 1257
11 Ga0070709_10010209 3300005434 Bacteria 5192
12 Ga0070709_10013567 3300005434 Bacteria 4585
13 Ga0070709_10059458 3300005434 Bacteria 2427
14 Ga0070709_10216545 3300005434 Bacteria 1364
15 Ga0070714_100028783 3300005435 Bacteria 4613
16 Ga0070714_100033787 3300005435 Bacteria 4279
17 Ga0070714_100484873 3300005435 Bacteria 1177
18 Ga0070713_100306025 3300005436 Bacteria 1464
19 Ga0070710_10014929 3300005437 Bacteria 3919
20 Ga0070710_10097369 3300005437 Bacteria 1746
21 Ga0070711_100053805 3300005439 Bacteria 2775
22 Ga0070711_100054378 3300005439 Bacteria 2763
23 Ga0070711_100074398 3300005439 Bacteria 2402
24 Ga0070711_100208241 3300005439 Bacteria 1513
25 Ga0070694_100356015 3300005444 Bacteria 1135
26 Ga0070708_100064479 3300005445 Bacteria 3282
27 Ga0070708_100190380 3300005445 Bacteria 1918
28 Ga0070663_100073363 3300005455 Bacteria 2496
29 Ga0070706_100077714 3300005467 Bacteria 3072
30 Ga0070707_100036795 3300005468 Bacteria 4672
31 Ga0070698_100007048 3300005471 Bacteria 12176
32 Ga0070697_100202426 3300005536 Bacteria 1688
33 Ga0070697_100398774 3300005536 Bacteria 1193
34 Ga0070704_100308376 3300005549 Bacteria 1322
35 Ga0070704_100312302 3300005549 Bacteria 1314
36 Ga0068854_100100161 3300005578 Bacteria 2171
37 Ga0068864_100046066 3300005618 Bacteria 3741
38 Ga0068863_100299942 3300005841 Bacteria 1558
39 Ga0068862_100337324 3300005844 Bacteria 1395
40 Ga0075363_100094874 3300006048 Bacteria 1645
41 Ga0075432_10006124 3300006058 Bacteria 4090
42 Ga0070716_100071269 3300006173 Bacteria 2043
43 Ga0070712_100004705 3300006175 Bacteria 8439
44 Ga0070712_100046743 3300006175 Bacteria 2993
45 Ga0070712_100205011 3300006175 Bacteria 1552
46 Ga0075433_10095159 3300006852 Bacteria 2636
47 Ga0075434_100077382 3300006871 Bacteria 3322
48 Ga0075434_100353734 3300006871 Bacteria 1490
49 Ga0075434_100468975 3300006871 Bacteria 1280
50 Ga0075434_100638192 3300006871 Bacteria 1083
51 Ga0075435_100264692 3300007076 Bacteria 1465
52 Ga0075435_100289398 3300007076 Bacteria 1400
53 Ga0099795_10057322 3300007788 Bacteria 1435
54 Ga0105251_10006753 3300009011 Bacteria 7242
55 Ga0105245_10141368 3300009098 Bacteria 2267
56 Ga0114129_10118369 3300009147 Bacteria 3649
57 Ga0105248_10116240 3300009177 Bacteria 3017
58 Ga0105248_10562333 3300009177 Bacteria 1287
59 Ga0105237_10324178 3300009545 Bacteria 1544
60 Ga0105239_10269397 3300010375 Bacteria 1915
61 Ga0157369_10390634 3300013105 Bacteria 1444
62 Ga0157379_10570269 3300014968 Bacteria 1054
63 Ga0182005_1015180 3300015265 Bacteria 2150
64 Ga0209129_1000250 3300025258 Bacteria 56427
65 Ga0209025_1000172 3300025294 Bacteria 160407
66 Ga0209564_1015866 3300025295 Bacteria 3040
67 Ga0207713_1037762 3300025735 Bacteria 2056
68 Ga0207692_10106678 3300025898 Bacteria 1547
69 Ga0207692_10171448 3300025898 Bacteria 1258
70 Ga0207692_10276348 3300025898 Bacteria 1015
71 Ga0207685_10109033 3300025905 Bacteria 1197
72 Ga0207699_10008148 3300025906 Bacteria 5156
73 Ga0207699_10032613 3300025906 Bacteria 2936
74 Ga0207684_10293512 3300025910 Bacteria 1402
75 Ga0207693_10017389 3300025915 Bacteria 5737
76 Ga0207693_10143499 3300025915 Bacteria 1877
77 Ga0207693_10241099 3300025915 Bacteria 1419
78 Ga0207646_10082399 3300025922 Bacteria 2877
79 Ga0207646_10099927 3300025922 Bacteria 2600
80 Ga0207646_10114866 3300025922 Bacteria 2417
81 Ga0207700_10071065 3300025928 Bacteria 2678
82 Ga0207664_10019418 3300025929 Bacteria 5023
83 Ga0207665_10110224 3300025939 Bacteria 1933
84 Ga0207711_10085776 3300025941 Bacteria 2760
85 Ga0207640_10073111 3300025981 Bacteria 2316
86 Ga0207641_10174913 3300026088 Bacteria 1962
87 Ga0207676_10057244 3300026095 Bacteria 3069
88 Ga0207428_10203275 3300027907 Bacteria 1490
89 Ga0307515_10149879 3300028794 Bacteria 2445
90 Ga0265760_10036031 3300031090 Bacteria 1467
91 Ga0307408_100300435 3300031548 Bacteria 1344
92 Ga0316214_1006656 3300033545 Bacteria 1530
93 Ga0373941_0037484 3300035115 Bacteria 1480
94 Ga0373947_0070349 3300035725 Bacteria 2144
95 Ga0395898_0079580 3300037466 Bacteria 3162
96 Ga0395901_0143486 3300038443 Bacteria 2510
97 Ga0451833_0528752 3300041491 Bacteria 1352
98 Ga0451853_0870197 3300041512 Bacteria 1456
99 Ga0453683_0068488 3300044673 Bacteria 2219
100 Ga0495590_0005814 3300046457 Bacteria 4847
101 Ga0495591_010581 3300046458 Bacteria 3564
102 Ga0495638_0000505 3300046460 Bacteria 46059
103 Ga0495584_0202684 3300046491 Bacteria 1008
104 Ga0495594_0087318 3300046499 Bacteria 1745
105 Ga0495594_0177945 3300046499 Bacteria 1211
106 Ga0495607_0007811 3300046501 Bacteria 7365
107 Ga0495620_0042602 3300046515 Bacteria 1982
108 Ga0495632_0000069 3300046519 Bacteria 107707
109 Ga0495632_0021065 3300046519 Bacteria 3518
110 Ga0495643_0041341 3300046522 Bacteria 2513
111 Ga0495644_0000008 3300046523 Bacteria 109929
112 Ga0495654_0067239 3300046530 Bacteria 1706
113 Ga0495640_0015614 3300046533 Bacteria 5707
114 Ga0495597_0005554 3300046542 Bacteria 6664
115 Ga0495611_0025041 3300046648 Bacteria 2598
116 Ga0495661_0005199 3300046665 Bacteria 9266
117 Ga0495671_0018051 3300046692 Bacteria 3751
118 Ga0495649_0000129 3300046694 Bacteria 66213
119 Ga0495660_0002072 3300046810 Bacteria 13004
120 Ga0495604_0014883 3300047317 Bacteria 6206
121 Ga0495672_0001360 3300047320 Bacteria 24230
122 Ga0495672_0006956 3300047320 Bacteria 8605
123 Ga0495683_0003412 3300047323 Bacteria 9274
124 Ga0495675_0045660 3300047444 Bacteria 2790
125 Ga0495685_000488 3300047447 Bacteria 12266
126 Ga0495673_0000768 3300047469 Bacteria 30420
127 Ga0496102_0424201 3300048905 Bacteria 1249
128 Ga0496103_0177208 3300048906 Bacteria 1370
129 Ga0496104_0120149 3300048907 Bacteria 2523
130 Ga0496106_0059089 3300048909 Bacteria 2904
131 Ga0496108_0020375 3300048911 Bacteria 5451
132 Ga0496109_0268165 3300048912 Bacteria 1608
133 Ga0496110_0051654 3300048913 Bacteria 3613
134 Ga0496110_0348653 3300048913 Bacteria 1349
135 Ga0496110_0358861 3300048913 Bacteria 1328
136 Ga0496111_0185000 3300048914 Bacteria 1549
137 Ga0496112_0006784 3300048915 Bacteria 10091
138 Ga0496112_0090963 3300048915 Bacteria 3020
139 Ga0496112_0128166 3300048915 Bacteria 2509
140 Ga0496112_0272831 3300048915 Bacteria 1639
141 Ga0496113_0021045 3300048916 Bacteria 4597
142 Ga0496121_0007696 3300048924 Bacteria 12933
143 Ga0496124_0000276 3300048927 Bacteria 98406
144 Ga0501257_019928 3300049686 Bacteria 1571
145 nmdc:mga00v17_92164_c1 3300050491 Bacteria 1904
146 nmdc:mga0n895_125583_c1 3300050512 Bacteria 2589
147 nmdc:mga0n895_129309_c1 3300050512 Bacteria 2550
148 nmdc:mga08x19_138767_c1 3300050514 Bacteria 1641
149 nmdc:mga08x19_42687_c1 3300050514 Bacteria 2891
150 nmdc:mga0a205_45220_c1 3300050515 Bacteria 4245
151 Ga0500635_0018567 3300053080 Bacteria 2101
152 Ga0495655_0012664 3300053083 Bacteria 1725
153 Ga0500651_0012443 3300053093 Bacteria 5158
154 Ga0500568_0013670 3300053139 Bacteria 3693
155 Ga0500616_0000597 3300053153 Bacteria 43872
156 Ga0500622_0047270 3300053156 Bacteria 2223
157 2523385763 2523231044 Bacteria 6434991
158 2559431762 2558860280 Bacteria 11429938
159 2600203610 2599185354 Bacteria 4398675
160 2686535442 2684623035 Bacteria 8032739
161 2689957547 2687453737 Bacteria 11203906
162 2819728163 2818991469 Bacteria 4644110
163 2884964734 2884960567 Bacteria 5437054
164 8047719114 8047710418 Bacteria 11023148
165 Ga0495585_0085308
166 LJQas_1004283
167 JGI25152J39213_1002024
168 JGI25151J46595_10002667
169 rootH2_10021680
170 rootH1_10128421
171 Ga0068869_100244104
172 Ga0070682_100009193
173 Ga0068868_100190791
174 Ga0070667_100395625
175 Ga0070709_10010209
176 Ga0070709_10013567
177 Ga0070709_10059458
178 Ga0070709_10216545
179 Ga0070714_100028783
180 Ga0070714_100033787
181 Ga0070714_100484873
182 Ga0070713_100306025
183 Ga0070710_10014929
184 Ga0070710_10097369
185 Ga0070711_100053805
186 Ga0070711_100054378
187 Ga0070711_100074398
188 Ga0070711_100208241
189 Ga0070694_100356015
190 Ga0070708_100064479
191 Ga0070708_100190380
192 Ga0070663_100073363
193 Ga0070706_100077714
194 Ga0070707_100036795
195 Ga0070698_100007048
196 Ga0070697_100202426
197 Ga0070697_100398774
198 Ga0070704_100308376
199 Ga0070704_100312302
200 Ga0068854_100100161
201 Ga0068864_100046066
202 Ga0068863_100299942
203 Ga0068862_100337324
204 Ga0075363_100094874
205 Ga0075432_10006124
206 Ga0070716_100071269
207 Ga0070712_100004705
208 Ga0070712_100046743
209 Ga0070712_100205011
210 Ga0075433_10095159
211 Ga0075434_100077382
212 Ga0075434_100353734
213 Ga0075434_100468975
214 Ga0075434_100638192
215 Ga0075435_100264692
216 Ga0075435_100289398
217 Ga0099795_10057322
218 Ga0105251_10006753
219 Ga0105245_10141368
220 Ga0114129_10118369
221 Ga0105248_10116240
222 Ga0105248_10562333
223 Ga0105237_10324178
224 Ga0105239_10269397
225 Ga0157369_10390634
226 Ga0157379_10570269
227 Ga0182005_1015180
228 Ga0209129_1000250
229 Ga0209025_1000172
230 Ga0209564_1015866
231 Ga0207713_1037762
232 Ga0207692_10106678
233 Ga0207692_10171448
234 Ga0207692_10276348
235 Ga0207685_10109033
236 Ga0207699_10008148
237 Ga0207699_10032613
238 Ga0207684_10293512
239 Ga0207693_10017389
240 Ga0207693_10143499
241 Ga0207693_10241099
242 Ga0207646_10082399
243 Ga0207646_10099927
244 Ga0207646_10114866
245 Ga0207700_10071065
246 Ga0207664_10019418
247 Ga0207665_10110224
248 Ga0207711_10085776
249 Ga0207640_10073111
250 Ga0207641_10174913
251 Ga0207676_10057244
252 Ga0207428_10203275
253 Ga0307515_10149879
254 Ga0265760_10036031
255 Ga0307408_100300435
256 Ga0316214_1006656
257 Ga0373941_0037484
258 Ga0373947_0070349
259 Ga0395898_0079580
260 Ga0395901_0143486
261 Ga0451833_0528752
262 Ga0451853_0870197
263 Ga0453683_0068488
264 Ga0495590_0005814
265 Ga0495591_010581
266 Ga0495638_0000505
267 Ga0495584_0202684
268 Ga0495594_0087318
269 Ga0495594_0177945
270 Ga0495607_0007811
271 Ga0495620_0042602
272 Ga0495632_0000069
273 Ga0495632_0021065
274 Ga0495643_0041341
275 Ga0495644_0000008
276 Ga0495654_0067239
277 Ga0495640_0015614
278 Ga0495597_0005554
279 Ga0495611_0025041
280 Ga0495661_0005199
281 Ga0495671_0018051
282 Ga0495649_0000129
283 Ga0495660_0002072
284 Ga0495604_0014883
285 Ga0495672_0001360
286 Ga0495672_0006956
287 Ga0495683_0003412
288 Ga0495675_0045660
289 Ga0495685_000488
290 Ga0495673_0000768
291 Ga0496102_0424201
292 Ga0496103_0177208
293 Ga0496104_0120149
294 Ga0496106_0059089
295 Ga0496108_0020375
296 Ga0496109_0268165
297 Ga0496110_0051654
298 Ga0496110_0348653
299 Ga0496110_0358861
300 Ga0496111_0185000
301 Ga0496112_0006784
302 Ga0496112_0090963
303 Ga0496112_0128166
304 Ga0496112_0272831
305 Ga0496113_0021045
306 Ga0496121_0007696
307 Ga0496124_0000276
308 Ga0501257_019928
309 nmdc:mga00v17_92164_c1
310 nmdc:mga0n895_125583_c1
311 nmdc:mga0n895_129309_c1
312 nmdc:mga08x19_138767_c1
313 nmdc:mga08x19_42687_c1
314 nmdc:mga0a205_45220_c1
315 Ga0500635_0018567
316 Ga0495655_0012664
317 Ga0500651_0012443
318 Ga0500568_0013670
319 Ga0500616_0000597
320 Ga0500622_0047270
321 2523385763
322 2559431762
323 2600203610
324 2686535442
325 2689957547
326 2819728163
327 2884964734
328 8047719114

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

64

265

0.88

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

66

264

0.77

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

70

299

0.77

PF08659

KR

KR domain

65

205

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rd5-assembly1.cif.gz_A crystal structure of a putative uncharacterized protein from mycobacterium paratuberculosis 0.8791 11 298
8g9m-assembly1.cif.gz_A acinetobacter_baumannii short-chain dehydrogenase 0.8546 18 257
3rd5-assembly1.cif.gz_A crystal structure of a putative uncharacterized protein from mycobacterium paratuberculosis 0.8538 11 298
8g9m-assembly1.cif.gz_A acinetobacter_baumannii short-chain dehydrogenase 0.8361 18 257
3rkr-assembly2.cif.gz_B-3 crystal structure of a metagenomic short-chain oxidoreductase (sdr) in complex with nadp 0.8345 23 246
ID Description Score Start End Superfamily
af_A0A368UI72_22_109_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9456 13 96 3.40.50.720
af_Q95QH4_36_248_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9017 25 220 3.40.50.720
af_A0A1D6F4K7_21_149_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8996 26 115 3.40.50.720
af_Q9W404_65_353_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8988 21 300 3.40.50.720
af_A0A368UI72_22_109_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8947 13 96 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A6F8YLX5-F1-model_v4 Oxidoreductase 0.9828 1 154
AF-A0A6J4TQ19-F1-model_v4 Oxidoreductase 0.9797 1 160
AF-A0A0P0SIF2-F1-model_v4 Oxidoreductase 0.9776 13 298
AF-A0A0N1NMT4-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.9732 1 181
AF-A0A6B1MQY6-F1-model_v4 deleted 0.9704 3 154

Map