F244231

General Info

Members Datasets Scaffolds Average Seq Length
164 89 328 419

Family's Representative Sequence

Representative Sequence 3300031901|Ga0307406_10041496|Ga0307406_100414962
Length 442
Sequence MSRLCSASRPEPGGQALTAADTIFALSSGRPPAAVAVVRTSGPAAFAAAEAMAGRLPAARRAVLMTLRSPSGGAVIDRALVLRFDRPASATGEDVVEYQCHGGRAVVDALLDAMTSCPGLRMAEPGEFTRRALANGRIDLTEAEGLADLLEAETESQRRAALLMAEGGLRRRIEGWRQQLVELSARAEAAIDYVGNEDETGADETRLADEARALAAEFGEWLGRPRAEPLKEGVRVVAAGPPNAGKSSLVNALADSDRAIVTDIPGTTRDSIEVPLSLDGVPVVLVDTAGLRDSNDVVEAIGVARAKEQIARADVLLWLGSPADAPAHPRLVRLHAQADRRGTAPDGLLAVSAVTGAGLGELAGRIAELARTLLPAEGELALNRRQASEMEEAMAVLDQGGGDLVRTAEGLRLARAAFDRLSGRAGVEDMLDALFGRFCLGK

Samples

Sample ID Description Type Environment
1 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
30 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
60 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
61 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
62 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
63 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
64 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
65 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
66 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
67 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
68 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
69 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
70 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
76 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
80 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
81 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
82 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
87 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
88 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
89 2885427238 Sphingomonas mesophila SYSUP0001 Isolate Stem Tuber

Type Distribution

Type Percentage (%)
Metagenomes 99.39
Metatranscriptomes 0
Isolates 0.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.61
Nodule 0
Rhizoplane 3.66
Rhizosphere 93.29
Stem 0
Stem Tuber 0.61
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307406_10041496 3300031901 Bacteria 2867
2 JGI24740J21852_10008870 3300001979 Bacteria 3981
3 Ga0070658_10025912 3300005327 Bacteria 4703
4 Ga0070658_10109390 3300005327 Bacteria 2288
5 Ga0070658_10172294 3300005327 Bacteria 1818
6 Ga0070676_10050236 3300005328 Bacteria 2444
7 Ga0070683_100016851 3300005329 Bacteria 6446
8 Ga0070683_100050239 3300005329 Bacteria 3859
9 Ga0070670_100181746 3300005331 Bacteria 1826
10 Ga0070660_100042976 3300005339 Bacteria 3452
11 Ga0070661_100060421 3300005344 Bacteria 2781
12 Ga0070692_10000443 3300005345 Bacteria 12618
13 Ga0070692_10072121 3300005345 Bacteria 1842
14 Ga0070668_100007951 3300005347 Bacteria 7876
15 Ga0070668_100112862 3300005347 Bacteria 2165
16 Ga0070675_100013495 3300005354 Bacteria 6421
17 Ga0070671_100000372 3300005355 Bacteria 31030
18 Ga0070671_100073585 3300005355 Bacteria 2854
19 Ga0070659_100050301 3300005366 Bacteria 3276
20 Ga0070659_100055038 3300005366 Bacteria 3134
21 Ga0070659_100224857 3300005366 Bacteria 1550
22 Ga0070667_100105745 3300005367 Bacteria 2436
23 Ga0070663_100065617 3300005455 Bacteria 2628
24 Ga0070662_100056401 3300005457 Bacteria 2852
25 Ga0070662_100242126 3300005457 Bacteria 1447
26 Ga0068867_100190730 3300005459 Bacteria 1635
27 Ga0070679_100101608 3300005530 Bacteria 2862
28 Ga0070679_100164019 3300005530 Bacteria 2196
29 Ga0070684_100032578 3300005535 Bacteria 4442
30 Ga0070684_100048674 3300005535 Bacteria 3677
31 Ga0068853_100351603 3300005539 Bacteria 1371
32 Ga0070672_100204804 3300005543 Bacteria 1651
33 Ga0070695_100034989 3300005545 Bacteria 3154
34 Ga0070665_100000168 3300005548 Bacteria 119133
35 Ga0068855_100024723 3300005563 Bacteria 7186
36 Ga0068855_100068939 3300005563 Bacteria 4116
37 Ga0068855_100371113 3300005563 Bacteria 1573
38 Ga0070664_100022986 3300005564 Bacteria 5144
39 Ga0070664_100056764 3300005564 Bacteria 3327
40 Ga0068852_100000305 3300005616 Bacteria 33064
41 Ga0068864_100000797 3300005618 Bacteria 26397
42 Ga0068864_100006722 3300005618 Bacteria 9423
43 Ga0068861_100226013 3300005719 Bacteria 1585
44 Ga0068851_10011809 3300005834 Bacteria 4103
45 Ga0068863_100010609 3300005841 Bacteria 8943
46 Ga0068863_100038229 3300005841 Bacteria 4566
47 Ga0068862_100039774 3300005844 Bacteria 3995
48 Ga0068871_100039428 3300006358 Bacteria 3780
49 Ga0111539_10105947 3300009094 Bacteria 3298
50 Ga0105248_10002389 3300009177 Bacteria 20852
51 Ga0105248_10026568 3300009177 Bacteria 6439
52 Ga0157373_10048888 3300013100 Bacteria 3015
53 Ga0157370_10001780 3300013104 Bacteria 26574
54 Ga0157370_10063558 3300013104 Bacteria 3496
55 Ga0157369_10014436 3300013105 Bacteria 8918
56 Ga0157374_10124169 3300013296 Bacteria 2494
57 Ga0157374_10171459 3300013296 Bacteria 2117
58 Ga0213876_10000258 3300021384 Bacteria 49441
59 Ga0207647_10043127 3300025904 Bacteria 2824
60 Ga0207645_10009549 3300025907 Bacteria 6704
61 Ga0207705_10008145 3300025909 Bacteria 7674
62 Ga0207705_10012457 3300025909 Bacteria 6143
63 Ga0207705_10016025 3300025909 Bacteria 5379
64 Ga0207705_10043376 3300025909 Bacteria 3231
65 Ga0207657_10001518 3300025919 Bacteria 24871
66 Ga0207657_10003225 3300025919 Bacteria 17473
67 Ga0207657_10043547 3300025919 Bacteria 3953
68 Ga0207657_10105147 3300025919 Bacteria 2337
69 Ga0207657_10178678 3300025919 Bacteria 1716
70 Ga0207659_10045782 3300025926 Bacteria 3087
71 Ga0207690_10043676 3300025932 Bacteria 2951
72 Ga0207711_10000389 3300025941 Bacteria 46530
73 Ga0207711_10083667 3300025941 Bacteria 2791
74 Ga0207661_10005828 3300025944 Bacteria 8689
75 Ga0207679_10046297 3300025945 Bacteria 3152
76 Ga0207667_10000828 3300025949 Bacteria 39983
77 Ga0207658_10075698 3300025986 Bacteria 2562
78 Ga0207678_10000321 3300026067 Bacteria 43233
79 Ga0207678_10015160 3300026067 Bacteria 6779
80 Ga0207641_10056506 3300026088 Bacteria 3336
81 Ga0207676_10039024 3300026095 Bacteria 3629
82 Ga0207674_10020585 3300026116 Bacteria 7123
83 Ga0207675_100023978 3300026118 Bacteria 5672
84 Ga0207698_10194437 3300026142 Bacteria 1811
85 Ga0268266_10000130 3300028379 Bacteria 147912
86 Ga0268265_10023907 3300028380 Bacteria 4315
87 Ga0307408_100073793 3300031548 Bacteria 2530
88 Ga0307408_100079459 3300031548 Bacteria 2447
89 Ga0307405_10021335 3300031731 Bacteria 3639
90 Ga0307405_10162131 3300031731 Bacteria 1585
91 Ga0307413_10010986 3300031824 Bacteria 4425
92 Ga0307413_10116138 3300031824 Bacteria 1802
93 Ga0307410_10007031 3300031852 Bacteria 6128
94 Ga0307410_10020962 3300031852 Bacteria 4011
95 Ga0307406_10024111 3300031901 Bacteria 3629
96 Ga0307406_10042744 3300031901 Bacteria 2831
97 Ga0307407_10033402 3300031903 Bacteria 2807
98 Ga0307407_10079033 3300031903 Bacteria 1984
99 Ga0307412_10002333 3300031911 Bacteria 10511
100 Ga0307412_10066152 3300031911 Bacteria 2449
101 Ga0307412_10138606 3300031911 Bacteria 1778
102 Ga0307412_10222788 3300031911 Bacteria 1447
103 Ga0307409_100077895 3300031995 Bacteria 2664
104 Ga0307409_100104350 3300031995 Bacteria 2360
105 Ga0307409_100115777 3300031995 Bacteria 2258
106 Ga0307409_100178229 3300031995 Bacteria 1878
107 Ga0307416_100001757 3300032002 Bacteria 12005
108 Ga0307414_10011838 3300032004 Bacteria 5136
109 Ga0307414_10040350 3300032004 Bacteria 3152
110 Ga0307411_10021652 3300032005 Bacteria 3768
111 Ga0307411_10029125 3300032005 Bacteria 3367
112 Ga0307411_10048451 3300032005 Bacteria 2754
113 Ga0307415_100019737 3300032126 Bacteria 4098
114 Ga0307415_100211045 3300032126 Bacteria 1549
115 Ga0395899_0003036 3300037312 Bacteria 13401
116 Ga0395899_0030310 3300037312 Bacteria 4069
117 Ga0395899_0046037 3300037312 Bacteria 3249
118 Ga0395899_0051417 3300037312 Bacteria 3058
119 Ga0395899_0088102 3300037312 Bacteria 2252
120 Ga0395899_0092541 3300037312 Bacteria 2189
121 Ga0395900_0006371 3300037418 Bacteria 12302
122 Ga0395900_0017810 3300037418 Bacteria 7251
123 Ga0395900_0020867 3300037418 Bacteria 6694
124 Ga0395900_0047847 3300037418 Bacteria 4405
125 Ga0395900_0052464 3300037418 Bacteria 4197
126 Ga0395900_0138822 3300037418 Bacteria 2490
127 Ga0395900_0142995 3300037418 Bacteria 2448
128 Ga0395900_0188716 3300037418 Bacteria 2092
129 Ga0395900_0227901 3300037418 Bacteria 1875
130 Ga0395900_0399875 3300037418 Bacteria 1338
131 Ga0395898_0016470 3300037466 Bacteria 7562
132 Ga0395898_0038169 3300037466 Bacteria 4762
133 Ga0395898_0087368 3300037466 Bacteria 3003
134 Ga0395898_0113301 3300037466 Bacteria 2599
135 Ga0395905_0025840 3300037471 Bacteria 5534
136 Ga0395905_0066891 3300037471 Bacteria 3365
137 Ga0395905_0110586 3300037471 Bacteria 2580
138 Ga0395905_0135681 3300037471 Bacteria 2314
139 Ga0395905_0153532 3300037471 Bacteria 2166
140 Ga0395905_0182148 3300037471 Bacteria 1972
141 Ga0395905_0281204 3300037471 Bacteria 1550
142 Ga0395901_0024733 3300038443 Bacteria 6165
143 Ga0395901_0134385 3300038443 Bacteria 2599
144 Ga0395901_0155551 3300038443 Bacteria 2401
145 Ga0395901_0253555 3300038443 Bacteria 1833
146 Ga0395901_0273495 3300038443 Bacteria 1756
147 Ga0436365_1503647 3300039437 Bacteria 38811
148 Ga0436365_1846725 3300039437 Bacteria 6360
149 Ga0466963_0037968 3300044694 Bacteria 3148
150 Ga0466958_0003520 3300045836 Bacteria 8140
151 Ga0466967_0010597 3300045976 Bacteria 6925
152 Ga0466967_0014326 3300045976 Bacteria 6171
153 Ga0466967_0051759 3300045976 Bacteria 3601
154 Ga0495669_0060957 3300046684 Bacteria 1706
155 Ga0495686_0121759 3300047472 Bacteria 1554
156 Ga0496102_0008732 3300048905 Bacteria 8695
157 Ga0496106_0001325 3300048909 Bacteria 18554
158 Ga0496108_0022076 3300048911 Bacteria 5233
159 Ga0496109_0021549 3300048912 Bacteria 5700
160 Ga0496110_0013545 3300048913 Bacteria 6747
161 Ga0496111_0001959 3300048914 Bacteria 12223
162 nmdc:mga08y16_77922_c1 3300050511 Bacteria 3455
163 Ga0500658_0000032 3300053134 Bacteria 90863
164 2885429290 2885427238 Bacteria 2291351
165 Ga0307406_10041496
166 JGI24740J21852_10008870
167 Ga0070658_10025912
168 Ga0070658_10109390
169 Ga0070658_10172294
170 Ga0070676_10050236
171 Ga0070683_100016851
172 Ga0070683_100050239
173 Ga0070670_100181746
174 Ga0070660_100042976
175 Ga0070661_100060421
176 Ga0070692_10000443
177 Ga0070692_10072121
178 Ga0070668_100007951
179 Ga0070668_100112862
180 Ga0070675_100013495
181 Ga0070671_100000372
182 Ga0070671_100073585
183 Ga0070659_100050301
184 Ga0070659_100055038
185 Ga0070659_100224857
186 Ga0070667_100105745
187 Ga0070663_100065617
188 Ga0070662_100056401
189 Ga0070662_100242126
190 Ga0068867_100190730
191 Ga0070679_100101608
192 Ga0070679_100164019
193 Ga0070684_100032578
194 Ga0070684_100048674
195 Ga0068853_100351603
196 Ga0070672_100204804
197 Ga0070695_100034989
198 Ga0070665_100000168
199 Ga0068855_100024723
200 Ga0068855_100068939
201 Ga0068855_100371113
202 Ga0070664_100022986
203 Ga0070664_100056764
204 Ga0068852_100000305
205 Ga0068864_100000797
206 Ga0068864_100006722
207 Ga0068861_100226013
208 Ga0068851_10011809
209 Ga0068863_100010609
210 Ga0068863_100038229
211 Ga0068862_100039774
212 Ga0068871_100039428
213 Ga0111539_10105947
214 Ga0105248_10002389
215 Ga0105248_10026568
216 Ga0157373_10048888
217 Ga0157370_10001780
218 Ga0157370_10063558
219 Ga0157369_10014436
220 Ga0157374_10124169
221 Ga0157374_10171459
222 Ga0213876_10000258
223 Ga0207647_10043127
224 Ga0207645_10009549
225 Ga0207705_10008145
226 Ga0207705_10012457
227 Ga0207705_10016025
228 Ga0207705_10043376
229 Ga0207657_10001518
230 Ga0207657_10003225
231 Ga0207657_10043547
232 Ga0207657_10105147
233 Ga0207657_10178678
234 Ga0207659_10045782
235 Ga0207690_10043676
236 Ga0207711_10000389
237 Ga0207711_10083667
238 Ga0207661_10005828
239 Ga0207679_10046297
240 Ga0207667_10000828
241 Ga0207658_10075698
242 Ga0207678_10000321
243 Ga0207678_10015160
244 Ga0207641_10056506
245 Ga0207676_10039024
246 Ga0207674_10020585
247 Ga0207675_100023978
248 Ga0207698_10194437
249 Ga0268266_10000130
250 Ga0268265_10023907
251 Ga0307408_100073793
252 Ga0307408_100079459
253 Ga0307405_10021335
254 Ga0307405_10162131
255 Ga0307413_10010986
256 Ga0307413_10116138
257 Ga0307410_10007031
258 Ga0307410_10020962
259 Ga0307406_10024111
260 Ga0307406_10042744
261 Ga0307407_10033402
262 Ga0307407_10079033
263 Ga0307412_10002333
264 Ga0307412_10066152
265 Ga0307412_10138606
266 Ga0307412_10222788
267 Ga0307409_100077895
268 Ga0307409_100104350
269 Ga0307409_100115777
270 Ga0307409_100178229
271 Ga0307416_100001757
272 Ga0307414_10011838
273 Ga0307414_10040350
274 Ga0307411_10021652
275 Ga0307411_10029125
276 Ga0307411_10048451
277 Ga0307415_100019737
278 Ga0307415_100211045
279 Ga0395899_0003036
280 Ga0395899_0030310
281 Ga0395899_0046037
282 Ga0395899_0051417
283 Ga0395899_0088102
284 Ga0395899_0092541
285 Ga0395900_0006371
286 Ga0395900_0017810
287 Ga0395900_0020867
288 Ga0395900_0047847
289 Ga0395900_0052464
290 Ga0395900_0138822
291 Ga0395900_0142995
292 Ga0395900_0188716
293 Ga0395900_0227901
294 Ga0395900_0399875
295 Ga0395898_0016470
296 Ga0395898_0038169
297 Ga0395898_0087368
298 Ga0395898_0113301
299 Ga0395905_0025840
300 Ga0395905_0066891
301 Ga0395905_0110586
302 Ga0395905_0135681
303 Ga0395905_0153532
304 Ga0395905_0182148
305 Ga0395905_0281204
306 Ga0395901_0024733
307 Ga0395901_0134385
308 Ga0395901_0155551
309 Ga0395901_0253555
310 Ga0395901_0273495
311 Ga0436365_1503647
312 Ga0436365_1846725
313 Ga0466963_0037968
314 Ga0466958_0003520
315 Ga0466967_0010597
316 Ga0466967_0014326
317 Ga0466967_0051759
318 Ga0495669_0060957
319 Ga0495686_0121759
320 Ga0496102_0008732
321 Ga0496106_0001325
322 Ga0496108_0022076
323 Ga0496109_0021549
324 Ga0496110_0013545
325 Ga0496111_0001959
326 nmdc:mga08y16_77922_c1
327 Ga0500658_0000032
328 2885429290

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10396

TrmE_N

GTP-binding protein TrmE N-terminus

22

137

0.95

PF01926

MMR_HSR1

50S ribosome-binding GTPase

235

341

0.88

PF12631

MnmE_helical

MnmE helical domain

140

439

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1xzq-assembly1.cif.gz_B structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf 0.911 2 118
1xzp-assembly1.cif.gz_B structure of the gtp-binding protein trme from thermotoga maritima 0.9013 1 120
1xzq-assembly1.cif.gz_B structure of the gtp-binding protein trme from thermotoga maritima complexed with 5-formyl-thf 0.8962 2 118
1xzp-assembly1.cif.gz_B structure of the gtp-binding protein trme from thermotoga maritima 0.8166 1 120
2j8w-assembly1.cif.gz_B the crystal structure of cytochrome c' from rubrivivax gelatinosus at 1.3 a resolution and ph 8.0 0.7845 367 407
ID Description Score Start End Superfamily
af_Q923K4_29_152_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9655 1 118 3.30.1360.120
af_P25522_1_121_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9605 3 120 3.30.1360.120
af_Q9UTE7_14_142_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9596 3 118 3.30.1360.120
af_Q9XTZ1_1_119_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9519 2 120 3.30.1360.120
af_A0A1D8PG79_8_151_3.30.1360.120 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;Probable tRNA modification gtpase trme; domain 1 0.9498 2 120 3.30.1360.120
ID Description Score Start End GO Terms
AF-A0A7W0MQ63-F1-model_v4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.9697 1 81 GO:0002098
GO:0005525
GO:0005737
GO:0030488
AF-A0A383DXP3-F1-model_v4 GTP-binding protein TrmE N-terminal domain-containing protein 0.9647 4 118 GO:0002098
GO:0005525
GO:0005737
GO:0030488
AF-A0A383F479-F1-model_v4 GTP-binding protein TrmE N-terminal domain-containing protein 0.9595 3 126 GO:0002098
GO:0005525
GO:0005737
GO:0030488
AF-A0A2S6R395-F1-model_v4 tRNA modification GTPase MnmE (EC 3.6.-.-) 0.9584 1 115 GO:0002098
GO:0005525
GO:0005737
GO:0016787
GO:0030488
AF-A0A4Q3QLJ8-F1-model_v4 deleted 0.9582 29 153

Map