F244198

General Info

Members Datasets Scaffolds Average Seq Length
164 90 328 264

Family's Representative Sequence

Representative Sequence 3300031344|Ga0265316_10096235|Ga0265316_100962352
Length 276
Sequence MRLKCRSGRMFRKKNYFALGAVTLLALLILSLPPRVTGRLKLAAGSLFLPLFGLANTTQQLPADLADRVMPRRELLQEIDRLRRENEQLHVQALQAAASARENIQLRSLLGWQQQAPWKLKPANVIMRDPANWWRTVQIDLGSRDGLRENLPVLTADGLMGRVSSVGFTRSQVVLIGDPDCRVSALVENPAHDMGVVNAGGLLDTSIVDLTYLSGGASLKPGQNVITSGLGGIFPKGIPIGQVVDSRPVEFGLYTEARVKLSVNLGALEQVWVLFP

Samples

Sample ID Description Type Environment
1 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
7 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
19 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
20 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
21 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
31 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
32 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
33 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
34 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
35 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
36 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
37 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
38 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
39 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
40 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
41 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
42 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
43 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
48 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
49 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
50 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
51 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
52 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
53 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
54 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
55 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
56 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
57 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
58 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
59 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
60 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
63 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
64 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
65 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
66 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
67 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
68 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
69 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
70 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
71 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
72 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
73 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
74 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
75 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.61
Nodule 0
Rhizoplane 0.61
Rhizosphere 98.17
Stem 0
Stem Tuber 0
Unclassified 24.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265316_10096235 3300031344 Bacteria 2254
2 rootH2_10072392 3300003320 Bacteria 5596
3 Ga0070689_100199338 3300005340 Bacteria 1634
4 Ga0070688_100024118 3300005365 Bacteria 3585
5 Ga0070714_100363622 3300005435 Bacteria 1361
6 Ga0070705_100015782 3300005440 Bacteria 3910
7 Ga0070694_100029127 3300005444 Bacteria 3601
8 Ga0070679_100587485 3300005530 Bacteria 1057
9 Ga0070686_100003453 3300005544 Bacteria 8669
10 Ga0068855_100007040 3300005563 Bacteria 13642
11 Ga0068855_100404916 3300005563 Unclassified 1495
12 Ga0068857_100173518 3300005577 Bacteria 1960
13 Ga0068856_100000760 3300005614 Bacteria 34998
14 Ga0068856_100050689 3300005614 Bacteria 4092
15 Ga0068856_101018106 3300005614 Unclassified 846
16 Ga0068859_100117770 3300005617 Unclassified 2722
17 Ga0075428_100011808 3300006844 Bacteria 9721
18 Ga0075428_100026526 3300006844 Bacteria 6414
19 Ga0097620_100117764 3300006931 Unclassified 2722
20 Ga0105240_10048382 3300009093 Bacteria 5375
21 Ga0105240_10146015 3300009093 Bacteria 2822
22 Ga0111539_10056032 3300009094 Bacteria 4686
23 Ga0105248_10120526 3300009177 Bacteria 2959
24 Ga0105248_10602583 3300009177 Unclassified 1239
25 Ga0105238_10009530 3300009551 Bacteria 9720
26 Ga0105238_10040656 3300009551 Bacteria 4711
27 Ga0157370_10141342 3300013104 Bacteria 2243
28 Ga0157370_10183863 3300013104 Unclassified 1941
29 Ga0207707_10160243 3300025912 Bacteria 1967
30 Ga0207695_10248636 3300025913 Bacteria 1678
31 Ga0207663_10002674 3300025916 Bacteria 8590
32 Ga0207694_10006509 3300025924 Bacteria 8889
33 Ga0207694_10036285 3300025924 Bacteria 3783
34 Ga0207664_10080124 3300025929 Bacteria 2653
35 Ga0207670_10302210 3300025936 Unclassified 1253
36 Ga0207670_10505691 3300025936 Unclassified 982
37 Ga0207667_10046196 3300025949 Bacteria 4611
38 Ga0207667_10568356 3300025949 Bacteria 1146
39 Ga0207702_10000506 3300026078 Bacteria 43980
40 Ga0207702_10039928 3300026078 Bacteria 3934
41 Ga0207702_10404911 3300026078 Unclassified 1316
42 Ga0207674_10103170 3300026116 Bacteria 2831
43 Ga0265337_1000108 3300028556 Bacteria 41858
44 Ga0265337_1005269 3300028556 Bacteria 5165
45 Ga0265337_1013645 3300028556 Unclassified 2718
46 Ga0265326_10008233 3300028558 Bacteria 3153
47 Ga0265326_10065111 3300028558 Unclassified 1030
48 Ga0265319_1000001 3300028563 Bacteria 549513
49 Ga0265319_1026012 3300028563 Unclassified 2088
50 Ga0265319_1047312 3300028563 Unclassified 1432
51 Ga0265319_1090149 3300028563 Unclassified 968
52 Ga0265334_10024461 3300028573 Bacteria 2449
53 Ga0265334_10090139 3300028573 Bacteria 1119
54 Ga0265318_10057477 3300028577 Unclassified 1454
55 Ga0265323_10003344 3300028653 Bacteria 7111
56 Ga0265323_10045220 3300028653 Bacteria 1582
57 Ga0265323_10105006 3300028653 Unclassified 931
58 Ga0265322_10044704 3300028654 Bacteria 1261
59 Ga0265322_10062317 3300028654 Bacteria 1058
60 Ga0265336_10000385 3300028666 Bacteria 28195
61 Ga0265336_10006613 3300028666 Unclassified 4165
62 Ga0265336_10013272 3300028666 Bacteria 2749
63 Ga0265336_10067503 3300028666 Unclassified 1070
64 Ga0265338_10000331 3300028800 Bacteria 85997
65 Ga0265338_10000580 3300028800 Bacteria 64333
66 Ga0265338_10001064 3300028800 Bacteria 45619
67 Ga0265338_10001320 3300028800 Bacteria 40589
68 Ga0265338_10001520 3300028800 Bacteria 37452
69 Ga0265338_10002144 3300028800 Bacteria 30308
70 Ga0265338_10010576 3300028800 Bacteria 10792
71 Ga0265338_10013329 3300028800 Bacteria 9288
72 Ga0265338_10015750 3300028800 Bacteria 8281
73 Ga0265338_10050654 3300028800 Bacteria 3751
74 Ga0265338_10080063 3300028800 Bacteria 2746
75 Ga0265338_10100392 3300028800 Bacteria 2360
76 Ga0265338_10112472 3300028800 Unclassified 2189
77 Ga0265338_10197425 3300028800 Bacteria 1520
78 Ga0265338_10285431 3300028800 Bacteria 1204
79 Ga0265324_10013764 3300029957 Bacteria 3009
80 Ga0265324_10060957 3300029957 Archaea 1289
81 Ga0265324_10086420 3300029957 Unclassified 1066
82 Ga0265330_10127480 3300031235 Bacteria 1083
83 Ga0265320_10000540 3300031240 Bacteria 29222
84 Ga0265320_10000696 3300031240 Bacteria 25617
85 Ga0265320_10018296 3300031240 Bacteria 3863
86 Ga0265320_10035314 3300031240 Bacteria 2535
87 Ga0265320_10035865 3300031240 Bacteria 2511
88 Ga0265320_10042216 3300031240 Unclassified 2264
89 Ga0265320_10050725 3300031240 Unclassified 2015
90 Ga0265320_10079793 3300031240 Unclassified 1529
91 Ga0265325_10039154 3300031241 Unclassified 2497
92 Ga0265325_10053294 3300031241 Unclassified 2074
93 Ga0265340_10030139 3300031247 Bacteria 2721
94 Ga0265340_10092014 3300031247 Unclassified 1416
95 Ga0265327_10002626 3300031251 Bacteria 18535
96 Ga0265316_10020442 3300031344 Bacteria 5633
97 Ga0265316_10057374 3300031344 Unclassified 3036
98 Ga0265316_10099706 3300031344 Bacteria 2209
99 Ga0265316_10139950 3300031344 Bacteria 1818
100 Ga0265313_10001776 3300031595 Bacteria 19740
101 Ga0265313_10021380 3300031595 Unclassified 3539
102 Ga0265313_10042196 3300031595 Bacteria 2242
103 Ga0265314_10012615 3300031711 Bacteria 6880
104 Ga0265314_10023287 3300031711 Bacteria 4724
105 Ga0265314_10268820 3300031711 Unclassified 970
106 Ga0373938_0046158 3300034957 Bacteria 982
107 Ga0373929_0000933 3300035085 Bacteria 5684
108 Ga0373944_0000119 3300035089 Bacteria 14794
109 Ga0373944_0045000 3300035089 Unclassified 1376
110 Ga0373951_0000814 3300035091 Bacteria 8487
111 Ga0373932_0000001 3300035112 Bacteria 1459067
112 Ga0373956_0015753 3300035119 Unclassified 3169
113 Ga0373943_0143487 3300035170 Unclassified 1288
114 Ga0373942_0027087 3300035207 Unclassified 1489
115 Ga0373962_0000005 3300035242 Bacteria 63923
116 Ga0373931_0000008 3300035691 Bacteria 362269
117 Ga0373935_0057369 3300035692 Bacteria 2484
118 Ga0373927_0010548 3300035695 Bacteria 6158
119 Ga0373927_0037433 3300035695 Bacteria 3153
120 Ga0373927_0229512 3300035695 Unclassified 1220
121 Ga0373933_0169740 3300035724 Bacteria 1388
122 Ga0373937_0064654 3300036401 Bacteria 3365
123 Ga0373925_0000192 3300037068 Bacteria 66343
124 Ga0373925_0021415 3300037068 Bacteria 4710
125 Ga0451807_0146892 3300041486 Bacteria 1756
126 Ga0451577_0004541 3300042876 Bacteria 14612
127 Ga0451577_0407400 3300042876 Unclassified 1234
128 Ga0453684_0097461 3300044712 Bacteria 3609
129 Ga0453684_0728464 3300044712 Bacteria 1075
130 Ga0451576_0092891 3300045051 Bacteria 3138
131 Ga0451576_0177357 3300045051 Unclassified 2225
132 Ga0451576_0421600 3300045051 Unclassified 1400
133 Ga0495618_0016809 3300046514 Bacteria 4480
134 Ga0495630_0084945 3300046517 Unclassified 2389
135 Ga0495640_0044660 3300046533 Bacteria 3080
136 Ga0495586_0004453 3300046535 Bacteria 7482
137 Ga0495587_0116687 3300046536 Bacteria 1531
138 Ga0495667_0060814 3300046559 Bacteria 2477
139 Ga0495634_0003078 3300046642 Bacteria 13575
140 Ga0495647_0019955 3300046681 Bacteria 2402
141 Ga0495658_0079592 3300046683 Unclassified 1920
142 Ga0495613_0008907 3300046689 Bacteria 7447
143 Ga0501031_0000231 3300049568 Bacteria 31958
144 Ga0501032_0043929 3300049569 Bacteria 3025
145 Ga0501033_0002690 3300049570 Bacteria 14908
146 Ga0501033_0013385 3300049570 Bacteria 6248
147 Ga0501033_0154435 3300049570 Bacteria 1654
148 Ga0501034_0099667 3300049571 Bacteria 2900
149 Ga0501037_0321430 3300049573 Bacteria 1071
150 Ga0501039_0166854 3300049575 Unclassified 1731
151 Ga0501043_0078511 3300049579 Bacteria 2594
152 Ga0501043_0083341 3300049579 Bacteria 2514
153 Ga0501043_0199911 3300049579 Bacteria 1552
154 Ga0501046_0049744 3300049580 Bacteria 3315
155 Ga0501047_0067422 3300049581 Bacteria 3449
156 Ga0501047_0643809 3300049581 Bacteria 880
157 Ga0501070_0349170 3300049586 Bacteria 1201
158 Ga0501035_0004691 3300049822 Bacteria 12974
159 Ga0501035_0106174 3300049822 Bacteria 2462
160 Ga0501044_0000079 3300049823 Bacteria 117924
161 Ga0501044_0031878 3300049823 Bacteria 5543
162 nmdc:mga0qj67_229545_c1 3300050509 Bacteria 1506
163 nmdc:mga08y16_46687_c1 3300050511 Bacteria 4534
164 Ga0500650_0000702 3300053098 Bacteria 8962
165 Ga0265316_10096235
166 rootH2_10072392
167 Ga0070689_100199338
168 Ga0070688_100024118
169 Ga0070714_100363622
170 Ga0070705_100015782
171 Ga0070694_100029127
172 Ga0070679_100587485
173 Ga0070686_100003453
174 Ga0068855_100007040
175 Ga0068855_100404916
176 Ga0068857_100173518
177 Ga0068856_100000760
178 Ga0068856_100050689
179 Ga0068856_101018106
180 Ga0068859_100117770
181 Ga0075428_100011808
182 Ga0075428_100026526
183 Ga0097620_100117764
184 Ga0105240_10048382
185 Ga0105240_10146015
186 Ga0111539_10056032
187 Ga0105248_10120526
188 Ga0105248_10602583
189 Ga0105238_10009530
190 Ga0105238_10040656
191 Ga0157370_10141342
192 Ga0157370_10183863
193 Ga0207707_10160243
194 Ga0207695_10248636
195 Ga0207663_10002674
196 Ga0207694_10006509
197 Ga0207694_10036285
198 Ga0207664_10080124
199 Ga0207670_10302210
200 Ga0207670_10505691
201 Ga0207667_10046196
202 Ga0207667_10568356
203 Ga0207702_10000506
204 Ga0207702_10039928
205 Ga0207702_10404911
206 Ga0207674_10103170
207 Ga0265337_1000108
208 Ga0265337_1005269
209 Ga0265337_1013645
210 Ga0265326_10008233
211 Ga0265326_10065111
212 Ga0265319_1000001
213 Ga0265319_1026012
214 Ga0265319_1047312
215 Ga0265319_1090149
216 Ga0265334_10024461
217 Ga0265334_10090139
218 Ga0265318_10057477
219 Ga0265323_10003344
220 Ga0265323_10045220
221 Ga0265323_10105006
222 Ga0265322_10044704
223 Ga0265322_10062317
224 Ga0265336_10000385
225 Ga0265336_10006613
226 Ga0265336_10013272
227 Ga0265336_10067503
228 Ga0265338_10000331
229 Ga0265338_10000580
230 Ga0265338_10001064
231 Ga0265338_10001320
232 Ga0265338_10001520
233 Ga0265338_10002144
234 Ga0265338_10010576
235 Ga0265338_10013329
236 Ga0265338_10015750
237 Ga0265338_10050654
238 Ga0265338_10080063
239 Ga0265338_10100392
240 Ga0265338_10112472
241 Ga0265338_10197425
242 Ga0265338_10285431
243 Ga0265324_10013764
244 Ga0265324_10060957
245 Ga0265324_10086420
246 Ga0265330_10127480
247 Ga0265320_10000540
248 Ga0265320_10000696
249 Ga0265320_10018296
250 Ga0265320_10035314
251 Ga0265320_10035865
252 Ga0265320_10042216
253 Ga0265320_10050725
254 Ga0265320_10079793
255 Ga0265325_10039154
256 Ga0265325_10053294
257 Ga0265340_10030139
258 Ga0265340_10092014
259 Ga0265327_10002626
260 Ga0265316_10020442
261 Ga0265316_10057374
262 Ga0265316_10099706
263 Ga0265316_10139950
264 Ga0265313_10001776
265 Ga0265313_10021380
266 Ga0265313_10042196
267 Ga0265314_10012615
268 Ga0265314_10023287
269 Ga0265314_10268820
270 Ga0373938_0046158
271 Ga0373929_0000933
272 Ga0373944_0000119
273 Ga0373944_0045000
274 Ga0373951_0000814
275 Ga0373932_0000001
276 Ga0373956_0015753
277 Ga0373943_0143487
278 Ga0373942_0027087
279 Ga0373962_0000005
280 Ga0373931_0000008
281 Ga0373935_0057369
282 Ga0373927_0010548
283 Ga0373927_0037433
284 Ga0373927_0229512
285 Ga0373933_0169740
286 Ga0373937_0064654
287 Ga0373925_0000192
288 Ga0373925_0021415
289 Ga0451807_0146892
290 Ga0451577_0004541
291 Ga0451577_0407400
292 Ga0453684_0097461
293 Ga0453684_0728464
294 Ga0451576_0092891
295 Ga0451576_0177357
296 Ga0451576_0421600
297 Ga0495618_0016809
298 Ga0495630_0084945
299 Ga0495640_0044660
300 Ga0495586_0004453
301 Ga0495587_0116687
302 Ga0495667_0060814
303 Ga0495634_0003078
304 Ga0495647_0019955
305 Ga0495658_0079592
306 Ga0495613_0008907
307 Ga0501031_0000231
308 Ga0501032_0043929
309 Ga0501033_0002690
310 Ga0501033_0013385
311 Ga0501033_0154435
312 Ga0501034_0099667
313 Ga0501037_0321430
314 Ga0501039_0166854
315 Ga0501043_0078511
316 Ga0501043_0083341
317 Ga0501043_0199911
318 Ga0501046_0049744
319 Ga0501047_0067422
320 Ga0501047_0643809
321 Ga0501070_0349170
322 Ga0501035_0004691
323 Ga0501035_0106174
324 Ga0501044_0000079
325 Ga0501044_0031878
326 nmdc:mga0qj67_229545_c1
327 nmdc:mga08y16_46687_c1
328 Ga0500650_0000702

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04085

MreC

rod shape-determining protein MreC

125

275

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6zm0-assembly1.cif.gz_AAA crystal structure of mrec from pseudomonas aeruginosa 0.895 110 272
6zm0-assembly1.cif.gz_AAA crystal structure of mrec from pseudomonas aeruginosa 0.8842 110 272
2qf5-assembly1.cif.gz_A high resolution structure of the major periplasmic domain from the cell shape-determining filament mrec (monoclinic form) 0.8388 109 273
2qf4-assembly2.cif.gz_B high resolution structure of the major periplasmic domain from the cell shape-determining filament mrec (orthorhombic form) 0.8313 109 271
5lp5-assembly1.cif.gz_C complex between penicillin-binding protein (pbp2) and mrec from helicobacter pylori 0.8256 109 271
ID Description Score Start End Superfamily
af_Q2FXS6_104_165_2.40.10.340 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 1 0.977 114 168 2.40.10.340
2j5uB02 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 1 0.9483 110 172 2.40.10.340
2j5uB03 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 2 0.8858 175 257 2.40.10.350
2qf4A01 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 1 0.8752 109 168 2.40.10.340
2j5uB03 Mainly Beta;Beta Barrel;Thrombin, subunit H;Rod shape-determining protein MreC, domain 2 0.8646 175 257 2.40.10.350
ID Description Score Start End GO Terms
AF-A0A7X7S9Z4-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.9336 109 271 GO:0005886
GO:0008360
AF-A0A1B2YUK8-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.9168 110 273 GO:0005886
GO:0008360
AF-A0A6H9P2K2-F1-model_v4 deleted 0.9122 109 272
AF-A0A4Q5ZCQ9-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.912 109 272 GO:0005886
GO:0008360
AF-A0A645IFJ9-F1-model_v4 Cell shape-determining protein MreC (Cell shape protein MreC) 0.9111 104 272 GO:0005886
GO:0008360

Map