F243514

General Info

Members Datasets Scaffolds Average Seq Length
164 125 328 232

Family's Representative Sequence

Representative Sequence 3300005843|Ga0068860_100387803|Ga0068860_1003878032
Length 249
Sequence VTRTPGQPLMERILRRAPSAVLTTALLLLAGVAIRSYPVGAETARALPAPTVDLPPGSATSAVVVLAGGCFWGVQGVFQHTKGVINAVSGYAGGDKRTANYEIVSSGGTGHAESVQVTYDPRQVSYGRLLQIFFSVAHDPTQLNRQGPDTGTQYRSAIFPTSAEQADVAKAYIAQLDEAHAFKKAIVTRIEPDRSFYPAENYHQDFLTRNPTYPYIAINDLPKIEDLKRLVPDLYRATPVLVAQVHSSK

Samples

Sample ID Description Type Environment
1 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
2 3300003162 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003693 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
32 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
40 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
48 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
56 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
57 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
58 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
78 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
84 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
85 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
86 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
87 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
88 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
89 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
90 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
91 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
92 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
93 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
96 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
97 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
98 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
99 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
100 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
101 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
102 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
103 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
104 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
105 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
106 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
107 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
108 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
109 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
110 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
111 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
112 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
113 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
114 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
115 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
116 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
117 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
118 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
119 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
120 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
121 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
122 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
123 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
124 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
125 2917699015 Bosea sp. F3-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.34
Metatranscriptomes 2.44
Isolates 1.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.05
Nodule 0
Rhizoplane 1.83
Rhizosphere 89.02
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068860_100387803 3300005843 Bacteria 1380
2 Ga0006778J45830_1057435 3300003162 Bacteria 2282
3 JGI25153J46596_10001821 3300003215 Bacteria 12633
4 Ga0032354_1041850 3300003693 Bacteria 3161
5 Ga0065712_10088784 3300005290 Bacteria 2502
6 Ga0065715_10113992 3300005293 Bacteria 2447
7 Ga0068869_100012362 3300005334 Bacteria 5641
8 Ga0070687_100323538 3300005343 Bacteria 986
9 Ga0070669_100039387 3300005353 Bacteria 3434
10 Ga0070709_10050939 3300005434 Bacteria 2596
11 Ga0070709_10330906 3300005434 Bacteria 1121
12 Ga0070714_100041277 3300005435 Bacteria 3892
13 Ga0070714_100060006 3300005435 Bacteria 3263
14 Ga0070714_100160608 3300005435 Bacteria 2033
15 Ga0070713_100020314 3300005436 Bacteria 5090
16 Ga0070710_10010027 3300005437 Bacteria 4645
17 Ga0070711_100018243 3300005439 Bacteria 4477
18 Ga0070711_100099001 3300005439 Bacteria 2118
19 Ga0070711_100110718 3300005439 Bacteria 2015
20 Ga0070705_100064118 3300005440 Bacteria 2194
21 Ga0070700_100010282 3300005441 Bacteria 5163
22 Ga0070694_100029275 3300005444 Bacteria 3593
23 Ga0070678_100100563 3300005456 Bacteria 2240
24 Ga0070681_10141811 3300005458 Bacteria 2332
25 Ga0070698_100309592 3300005471 Bacteria 1510
26 Ga0070699_100235820 3300005518 Bacteria 1632
27 Ga0070696_100099143 3300005546 Bacteria 2085
28 Ga0070665_100002789 3300005548 Bacteria 18949
29 Ga0070665_100084447 3300005548 Bacteria 3181
30 Ga0070665_100385040 3300005548 Bacteria 1410
31 Ga0070665_100500223 3300005548 Bacteria 1227
32 Ga0068855_100150971 3300005563 Bacteria 2642
33 Ga0068864_100395222 3300005618 Bacteria 1313
34 Ga0068861_100007398 3300005719 Bacteria 7524
35 Ga0068863_100447712 3300005841 Bacteria 1267
36 Ga0068860_100910185 3300005843 Bacteria 896
37 Ga0068862_100218858 3300005844 Bacteria 1723
38 Ga0068862_100279565 3300005844 Bacteria 1529
39 Ga0081538_10012989 3300005981 Bacteria 6626
40 Ga0070717_10041655 3300006028 Bacteria 3744
41 Ga0070716_100042894 3300006173 Bacteria 2527
42 Ga0070712_100133024 3300006175 Bacteria 1887
43 Ga0070712_100486596 3300006175 Bacteria 1032
44 Ga0097621_100018145 3300006237 Bacteria 5366
45 Ga0097621_100417859 3300006237 Bacteria 1203
46 Ga0068871_100004604 3300006358 Bacteria 9625
47 Ga0075428_100000012 3300006844 Bacteria 176329
48 Ga0075428_100205252 3300006844 Bacteria 2130
49 Ga0075430_100018642 3300006846 Bacteria 5906
50 Ga0075430_100218095 3300006846 Bacteria 1583
51 Ga0075431_100164862 3300006847 Bacteria 2278
52 Ga0075436_100206276 3300006914 Bacteria 1393
53 Ga0075435_100009841 3300007076 Bacteria 6958
54 Ga0075435_100747253 3300007076 Bacteria 851
55 Ga0099794_10150229 3300007265 Bacteria 1182
56 Ga0111539_10000001 3300009094 Bacteria 1035431
57 Ga0105247_10052773 3300009101 Bacteria 2508
58 Ga0105243_10006319 3300009148 Bacteria 9154
59 Ga0105242_10021583 3300009176 Bacteria 5058
60 Ga0105248_10126853 3300009177 Bacteria 2878
61 Ga0105248_10208817 3300009177 Bacteria 2200
62 Ga0105248_10273018 3300009177 Bacteria 1904
63 Ga0105249_10030310 3300009553 Bacteria 4890
64 Ga0105249_10628504 3300009553 Bacteria 1130
65 Ga0171462_1036 3300013250 Bacteria 79177
66 Ga0157374_11385783 3300013296 Bacteria 726
67 Ga0157378_10522441 3300013297 Bacteria 1189
68 Ga0157372_10161510 3300013307 Bacteria 2589
69 Ga0157375_10170756 3300013308 Bacteria 2322
70 Ga0157380_10004356 3300014326 Bacteria 9818
71 Ga0157380_10015396 3300014326 Bacteria 5621
72 Ga0157380_10080478 3300014326 Bacteria 2663
73 Ga0157380_10166536 3300014326 Bacteria 1921
74 Ga0157380_10690350 3300014326 Bacteria 1024
75 Ga0157379_10032253 3300014968 Bacteria 4669
76 Ga0157376_10097462 3300014969 Bacteria 2561
77 Ga0213876_10082589 3300021384 Bacteria 1700
78 Ga0213875_10022780 3300021388 Bacteria 2996
79 Ga0209758_1000204 3300025297 Bacteria 131754
80 Ga0207710_10057063 3300025900 Bacteria 1763
81 Ga0207707_10024736 3300025912 Bacteria 5253
82 Ga0207693_10012356 3300025915 Bacteria 6899
83 Ga0207693_10033805 3300025915 Bacteria 4034
84 Ga0207693_10096473 3300025915 Bacteria 2318
85 Ga0207693_10216274 3300025915 Bacteria 1506
86 Ga0207663_10060382 3300025916 Bacteria 2402
87 Ga0207663_10061561 3300025916 Bacteria 2382
88 Ga0207657_10069171 3300025919 Bacteria 2996
89 Ga0207681_10008887 3300025923 Bacteria 6136
90 Ga0207700_10120072 3300025928 Bacteria 2130
91 Ga0207664_10291266 3300025929 Bacteria 1435
92 Ga0207669_10000970 3300025937 Bacteria 12152
93 Ga0207665_10009985 3300025939 Bacteria 6232
94 Ga0207711_10097037 3300025941 Bacteria 2602
95 Ga0207711_10360218 3300025941 Bacteria 1347
96 Ga0207711_10560072 3300025941 Bacteria 1066
97 Ga0207711_10691634 3300025941 Bacteria 951
98 Ga0207689_10044426 3300025942 Bacteria 3674
99 Ga0207667_10488584 3300025949 Bacteria 1249
100 Ga0207658_10625540 3300025986 Bacteria 969
101 Ga0207708_10053556 3300026075 Bacteria 3074
102 Ga0207648_10112916 3300026089 Bacteria 2386
103 Ga0207675_100015821 3300026118 Bacteria 7035
104 Ga0207683_10076753 3300026121 Bacteria 2958
105 Ga0207683_10795433 3300026121 Bacteria 878
106 Ga0209588_1063596 3300027671 Bacteria 1192
107 Ga0207428_10000205 3300027907 Bacteria 82100
108 Ga0268266_10025959 3300028379 Bacteria 4984
109 Ga0268266_10058364 3300028379 Bacteria 3323
110 Ga0268266_10864502 3300028379 Bacteria 874
111 Ga0268265_10003201 3300028380 Bacteria 11886
112 Ga0268264_10364414 3300028381 Bacteria 1380
113 Ga0265770_1000799 3300030878 Bacteria 4383
114 Ga0265760_10000139 3300031090 Bacteria 18327
115 Ga0265340_10140010 3300031247 Bacteria 1107
116 Ga0307405_10007302 3300031731 Bacteria 5511
117 Ga0307405_10135349 3300031731 Bacteria 1710
118 Ga0307413_10223777 3300031824 Bacteria 1376
119 Ga0307406_10068649 3300031901 Bacteria 2315
120 Ga0307412_10512400 3300031911 Bacteria 1001
121 Ga0307414_10317370 3300032004 Bacteria 1325
122 Ga0373933_0017322 3300035724 Bacteria 4041
123 Ga0373937_0005289 3300036401 Bacteria 11028
124 Ga0373937_0049503 3300036401 Bacteria 3848
125 Ga0373937_0355664 3300036401 Bacteria 1388
126 Ga0373925_0068718 3300037068 Bacteria 2675
127 Ga0436364_0644210 3300037853 Bacteria 5961
128 Ga0436364_1462820 3300037853 Bacteria 2128
129 Ga0395901_0376427 3300038443 Bacteria 1462
130 Ga0436365_0706096 3300039437 Bacteria 2245
131 Ga0436365_1673000 3300039437 Bacteria 5008
132 Ga0436360_0092518 3300039438 Bacteria 3741
133 Ga0451853_0685665 3300041512 Bacteria 2572
134 Ga0439452_023280 3300042010 Bacteria 1595
135 Ga0466963_0477253 3300044694 Bacteria 880
136 Ga0466957_0056614 3300044842 Bacteria 2398
137 Ga0495638_0051657 3300046460 Bacteria 2564
138 Ga0495651_0456738 3300046462 Bacteria 824
139 Ga0495653_0429746 3300046463 Bacteria 834
140 Ga0495645_0143212 3300046543 Bacteria 1666
141 Ga0495634_0053652 3300046642 Bacteria 2700
142 Ga0495634_0340321 3300046642 Bacteria 900
143 Ga0495635_0107057 3300046663 Bacteria 1910
144 Ga0495647_0085494 3300046681 Bacteria 1285
145 Ga0495658_0031528 3300046683 Bacteria 2888
146 Ga0495684_0440656 3300047471 Bacteria 907
147 Ga0496100_0031970 3300048903 Bacteria 3277
148 Ga0496102_0049993 3300048905 Bacteria 3806
149 Ga0496114_0444692 3300048917 Bacteria 1148
150 Ga0496116_0023046 3300048919 Bacteria 4646
151 Ga0496124_0128083 3300048927 Bacteria 2020
152 nmdc:mga0qj67_18621_c1 3300050509 Bacteria 5293
153 nmdc:mga0qj67_188681_c1 3300050509 Bacteria 1675
154 nmdc:mga08y16_3_c1 3300050511 Bacteria 936907
155 nmdc:mga08x19_174651_c1 3300050514 Bacteria 1464
156 nmdc:mga0a205_328015_c1 3300050515 Bacteria 1401
157 Ga0495601_0163626 3300053077 Bacteria 1454
158 Ga0495595_0195631 3300053084 Bacteria 1006
159 Ga0495619_0436412 3300053085 Bacteria 903
160 Ga0500555_000068 3300053103 Bacteria 52032
161 Ga0500618_010565 3300053125 Bacteria 2474
162 Ga0500568_0013892 3300053139 Bacteria 3656
163 2821444304 2821443989 Bacteria 7658172
164 2917703134 2917699015 Bacteria 7043791
165 Ga0068860_100387803
166 Ga0006778J45830_1057435
167 JGI25153J46596_10001821
168 Ga0032354_1041850
169 Ga0065712_10088784
170 Ga0065715_10113992
171 Ga0068869_100012362
172 Ga0070687_100323538
173 Ga0070669_100039387
174 Ga0070709_10050939
175 Ga0070709_10330906
176 Ga0070714_100041277
177 Ga0070714_100060006
178 Ga0070714_100160608
179 Ga0070713_100020314
180 Ga0070710_10010027
181 Ga0070711_100018243
182 Ga0070711_100099001
183 Ga0070711_100110718
184 Ga0070705_100064118
185 Ga0070700_100010282
186 Ga0070694_100029275
187 Ga0070678_100100563
188 Ga0070681_10141811
189 Ga0070698_100309592
190 Ga0070699_100235820
191 Ga0070696_100099143
192 Ga0070665_100002789
193 Ga0070665_100084447
194 Ga0070665_100385040
195 Ga0070665_100500223
196 Ga0068855_100150971
197 Ga0068864_100395222
198 Ga0068861_100007398
199 Ga0068863_100447712
200 Ga0068860_100910185
201 Ga0068862_100218858
202 Ga0068862_100279565
203 Ga0081538_10012989
204 Ga0070717_10041655
205 Ga0070716_100042894
206 Ga0070712_100133024
207 Ga0070712_100486596
208 Ga0097621_100018145
209 Ga0097621_100417859
210 Ga0068871_100004604
211 Ga0075428_100000012
212 Ga0075428_100205252
213 Ga0075430_100018642
214 Ga0075430_100218095
215 Ga0075431_100164862
216 Ga0075436_100206276
217 Ga0075435_100009841
218 Ga0075435_100747253
219 Ga0099794_10150229
220 Ga0111539_10000001
221 Ga0105247_10052773
222 Ga0105243_10006319
223 Ga0105242_10021583
224 Ga0105248_10126853
225 Ga0105248_10208817
226 Ga0105248_10273018
227 Ga0105249_10030310
228 Ga0105249_10628504
229 Ga0171462_1036
230 Ga0157374_11385783
231 Ga0157378_10522441
232 Ga0157372_10161510
233 Ga0157375_10170756
234 Ga0157380_10004356
235 Ga0157380_10015396
236 Ga0157380_10080478
237 Ga0157380_10166536
238 Ga0157380_10690350
239 Ga0157379_10032253
240 Ga0157376_10097462
241 Ga0213876_10082589
242 Ga0213875_10022780
243 Ga0209758_1000204
244 Ga0207710_10057063
245 Ga0207707_10024736
246 Ga0207693_10012356
247 Ga0207693_10033805
248 Ga0207693_10096473
249 Ga0207693_10216274
250 Ga0207663_10060382
251 Ga0207663_10061561
252 Ga0207657_10069171
253 Ga0207681_10008887
254 Ga0207700_10120072
255 Ga0207664_10291266
256 Ga0207669_10000970
257 Ga0207665_10009985
258 Ga0207711_10097037
259 Ga0207711_10360218
260 Ga0207711_10560072
261 Ga0207711_10691634
262 Ga0207689_10044426
263 Ga0207667_10488584
264 Ga0207658_10625540
265 Ga0207708_10053556
266 Ga0207648_10112916
267 Ga0207675_100015821
268 Ga0207683_10076753
269 Ga0207683_10795433
270 Ga0209588_1063596
271 Ga0207428_10000205
272 Ga0268266_10025959
273 Ga0268266_10058364
274 Ga0268266_10864502
275 Ga0268265_10003201
276 Ga0268264_10364414
277 Ga0265770_1000799
278 Ga0265760_10000139
279 Ga0265340_10140010
280 Ga0307405_10007302
281 Ga0307405_10135349
282 Ga0307413_10223777
283 Ga0307406_10068649
284 Ga0307412_10512400
285 Ga0307414_10317370
286 Ga0373933_0017322
287 Ga0373937_0005289
288 Ga0373937_0049503
289 Ga0373937_0355664
290 Ga0373925_0068718
291 Ga0436364_0644210
292 Ga0436364_1462820
293 Ga0395901_0376427
294 Ga0436365_0706096
295 Ga0436365_1673000
296 Ga0436360_0092518
297 Ga0451853_0685665
298 Ga0439452_023280
299 Ga0466963_0477253
300 Ga0466957_0056614
301 Ga0495638_0051657
302 Ga0495651_0456738
303 Ga0495653_0429746
304 Ga0495645_0143212
305 Ga0495634_0053652
306 Ga0495634_0340321
307 Ga0495635_0107057
308 Ga0495647_0085494
309 Ga0495658_0031528
310 Ga0495684_0440656
311 Ga0496100_0031970
312 Ga0496102_0049993
313 Ga0496114_0444692
314 Ga0496116_0023046
315 Ga0496124_0128083
316 nmdc:mga0qj67_18621_c1
317 nmdc:mga0qj67_188681_c1
318 nmdc:mga08y16_3_c1
319 nmdc:mga08x19_174651_c1
320 nmdc:mga0a205_328015_c1
321 Ga0495601_0163626
322 Ga0495595_0195631
323 Ga0495619_0436412
324 Ga0500555_000068
325 Ga0500618_010565
326 Ga0500568_0013892
327 2821444304
328 2917703134

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01625

PMSR

Peptide methionine sulfoxide reductase

63

217

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gwb-assembly1.cif.gz_A-2 crystal structure of putative peptide methionine sulfoxide reductase from sinorhizobium meliloti 1021 0.9658 52 202
3bqf-assembly1.cif.gz_A structure of the central domain (msra) of neisseria meningitidis pilb (complex with a substrate) 0.9607 51 202
3bqe-assembly1.cif.gz_A structure of the central domain (msra) of neisseria meningitidis pilb (reduced form) 0.959 50 202
1nwa-assembly1.cif.gz_A structure of mycobacterium tuberculosis methionine sulfoxide reductase a in complex with protein-bound methionine 0.9535 49 202
7e43-assembly2.cif.gz_A structural insights into a bifunctional peptide methionine sulfoxide reductase msra/b fusion protein from helicobacter pylori 0.9486 50 202
ID Description Score Start End Superfamily
af_Q551H3_1_147_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9623 52 199 3.30.1060.10
af_P9WJM5_1_166_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9533 51 201 3.30.1060.10
af_P0A084_1_166_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9485 51 202 3.30.1060.10
af_P0A086_1_166_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9439 50 207 3.30.1060.10
af_Q551H3_1_147_3.30.1060.10 Alpha Beta;2-Layer Sandwich;Peptide Methionine Sulfoxide Reductase; Chain A;Peptide methionine sulphoxide reductase MsrA 0.9432 52 199 3.30.1060.10
ID Description Score Start End GO Terms
AF-A0A531M5G0-F1-model_v4 peptide-methionine (S)-S-oxide reductase (EC 1.8.4.11) 0.9993 54 221 GO:0008113
GO:0033744
AF-A0A529LRA0-F1-model_v4 peptide-methionine (S)-S-oxide reductase (EC 1.8.4.11) 0.9972 61 236 GO:0008113
GO:0033744
AF-A0A2V8J0E9-F1-model_v4 Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (EC 1.8.4.11) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) 0.9967 33 234 GO:0008113
GO:0033744
GO:0036211
AF-A0A4Q5W4M2-F1-model_v4 deleted 0.9967 54 232
AF-A0A2W4PK19-F1-model_v4 deleted 0.9959 31 234

Map