F242156

General Info

Members Datasets Scaffolds Average Seq Length
163 140 113 357

Family's Representative Sequence

Representative Sequence 3300041413|Ga0439465_0002649|Ga0439465_0002649_2925_4088
Length 387
Sequence MTGTQYLPVRSAKHRLQEVPMPANVATSASDLEPRKGSPSPRLDEHEFKRRFLNQFQDPAYGKLQEELARLASAAWEAYANSRKSPKTRKAGPGFADPDYDLAEDWLAARDAIRDAQKRHDDPNGPTRLLLVNGSTRSEHTCPGEISKSYRMVDIAREVLEQQRHVKIEILDLSRLASEYGRQIHPCKACFSTAAALCHWPCSCYPNYSLGQIHDWMNEIYPMWVEAHGIMIVTPVHWYQAPSSLKLMIDRLVCADGGNPDPTSTHGKHADQAKQLEMHGWPYPRHLEGRLFSVIVHGDTEGAEGVRRNLSDWLRSMDLIPAGPLAEIDRYIGYWEPYATSHAAYEKDQAMQEEIRNAARTLYEAAAARRQGRQIATGAGLRQPRQK

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
3 2510065019 Rhizobium leguminosarum bv. trifolii WSM1689 Isolate Nodule
4 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
5 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
6 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
7 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
8 2516653077 Rhizobium acaciae WSM1481 Isolate Nodule
9 2517093000 Rhizobium leguminosarum bv. trifolii SRDI943 Isolate Nodule
10 2517287029 Rhizobium leguminosarum bv. trifolii SRDI565 Isolate Nodule
11 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
12 2643221599 Rhizobium sp. Root708 Isolate Unclassified
13 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
14 2721755685 Rhizobium phaseoli sv. phaseoli R611 Isolate Nodule
15 2721755822 Rhizobium phaseoli sv. phaseoli R650 Isolate Nodule
16 2721755823 Rhizobium phaseoli sv. phaseoli R630 Isolate Nodule
17 2773857925 Microvirga vignae BR3299 Isolate Unclassified
18 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
19 2791355256 Rhizobium sp. M10 Isolate Nodule
20 2791355261 Rhizobium sp. J15 Isolate Nodule
21 2791355262 Rhizobium sp. M1 Isolate Nodule
22 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
23 2838061910 Rhizobium phaseoli L15 Isolate Nodule
24 2842205361 Rhizobium etli SEMIA 471 Isolate Nodule
25 2842264693 Rhizobium phaseoli SEMIA 487 Isolate Nodule
26 2842278818 Rhizobium etli SEMIA 489 Isolate Nodule
27 2842298080 Rhizobium leucaenae SEMIA 492 Isolate Nodule
28 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
29 2842402390 Rhizobium lentis SEMIA 4033 Isolate Nodule
30 2842409023 Rhizobium lentis SEMIA 4034 Isolate Nodule
31 2842415677 Rhizobium lentis SEMIA 4036 Isolate Nodule
32 2842428310 Rhizobium phaseoli SEMIA 4050 Isolate Nodule
33 2842434925 Rhizobium esperanzae SEMIA 4051 Isolate Nodule
34 2842441272 Rhizobium esperanzae SEMIA 4053 Isolate Nodule
35 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
36 2842469257 Rhizobium phaseoli SEMIA 4058 Isolate Nodule
37 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
38 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
39 2881665667 Bradyrhizobium vignae LMG 28791 Isolate Unclassified
40 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
41 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
42 2922361189 Bradyrhizobium australiense WSM 1791 Isolate Nodule
43 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
44 2996887358 Rhizobium sp. R711 Isolate Nodule
45 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
46 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
47 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
48 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
49 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
50 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
51 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
52 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
53 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
54 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
55 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
56 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
57 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
58 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
59 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
60 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
61 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
62 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
63 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
64 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
65 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
66 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
67 3300006941 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW Metagenome Nodule
68 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
69 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
70 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
71 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
72 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
73 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
74 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
75 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
76 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
77 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
78 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
80 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
81 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
82 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
83 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
84 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
85 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
95 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
96 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
97 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
98 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
100 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
101 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
102 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
103 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
104 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
105 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
106 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
107 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
108 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
109 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
110 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
111 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
112 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
113 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
114 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
115 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
116 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
117 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
118 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
119 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
120 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
121 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
122 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
123 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
124 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
125 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
126 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
127 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
128 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
130 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
131 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
132 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
133 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
134 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
135 8005289223 Rhizobium bangladeshense 1002 Isolate Nodule
136 8005321885 Rhizobium sp. R72 Isolate Nodule
137 8005382845 Rhizobium sp. R634 Isolate Nodule
138 8005395548 Rhizobium sp. R339 Isolate Nodule
139 8005430974 Rhizobium phaseoli Y20 Isolate Nodule
140 8056382006 Rhizobium croatiense 13T Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 69.33
Metatranscriptomes 0
Isolates 30.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.95
Nodule 30.67
Rhizoplane 1.23
Rhizosphere 39.26
Stem 0
Stem Tuber 0
Unclassified 12.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1002554 3300002773 Bacteria 6852
2 JGI25151J46595_10000438 3300003187 Bacteria 41211
3 JGI25153J46596_10000328 3300003215 Bacteria 34334
4 rootL2_10197127 3300003322 Bacteria 5242
5 JGI25160J50197_1005524 3300003354 Bacteria 5246
6 Ga0055526_1000340 3300003771 Bacteria 38210
7 Ga0055524_1001105 3300003775 Bacteria 16347
8 Ga0055540_1000113 3300003792 Bacteria 86603
9 Ga0070670_100000007 3300005331 Bacteria 318672
10 Ga0070668_100000622 3300005347 Bacteria 23828
11 Ga0070668_100022347 3300005347 Bacteria 4780
12 Ga0070668_100172818 3300005347 Bacteria 1760
13 Ga0070668_100177211 3300005347 Bacteria 1739
14 Ga0070673_100029658 3300005364 Bacteria 4082
15 Ga0070714_100081991 3300005435 Bacteria 2809
16 Ga0070663_100073537 3300005455 Bacteria 2493
17 Ga0070665_100011181 3300005548 Bacteria 9075
18 Ga0070665_100098448 3300005548 Bacteria 2929
19 Ga0068855_100038575 3300005563 Bacteria 5675
20 Ga0068854_100089810 3300005578 Bacteria 2284
21 Ga0068864_100000128 3300005618 Bacteria 73813
22 Ga0068863_100000360 3300005841 Bacteria 46300
23 Ga0068858_100011323 3300005842 Bacteria 8424
24 Ga0081539_10005756 3300005985 Bacteria 12370
25 Ga0075363_100009701 3300006048 Bacteria 4532
26 Ga0070716_100033588 3300006173 Bacteria 2807
27 Ga0099825_1021946 3300006941 Bacteria 4221
28 Ga0099824_1009305 3300006942 Bacteria 12157
29 Ga0099824_1014241 3300006942 Bacteria 7969
30 Ga0099822_1039146 3300006943 Bacteria 2740
31 Ga0105237_10392398 3300009545 Bacteria 1393
32 Ga0157371_10035345 3300013102 Bacteria 3581
33 Ga0157370_10013938 3300013104 Bacteria 8254
34 Ga0157370_10078861 3300013104 Bacteria 3101
35 Ga0157374_10060326 3300013296 Bacteria 3550
36 Ga0163162_10429984 3300013306 Bacteria 1452
37 Ga0157372_10111436 3300013307 Bacteria 3135
38 Ga0157379_10005067 3300014968 Bacteria 11296
39 Ga0209129_1001806 3300025258 Bacteria 11362
40 Ga0209673_1001594 3300025273 Bacteria 19991
41 Ga0209673_1018521 3300025273 Bacteria 2530
42 Ga0209130_1000743 3300025284 Bacteria 28477
43 Ga0209025_1000456 3300025294 Bacteria 79848
44 Ga0209564_1000354 3300025295 Bacteria 85718
45 Ga0209758_1000396 3300025297 Bacteria 75453
46 Ga0209758_1002584 3300025297 Bacteria 18173
47 Ga0209758_1009518 3300025297 Bacteria 6018
48 Ga0209256_1002120 3300025299 Bacteria 17208
49 Ga0207426_1000750 3300025302 Bacteria 36521
50 Ga0207426_1001274 3300025302 Bacteria 21933
51 Ga0209051_1000287 3300025303 Bacteria 80935
52 Ga0209257_1001819 3300025304 Bacteria 23338
53 Ga0207697_10034138 3300025315 Unclassified 2083
54 Ga0207707_10010100 3300025912 Bacteria 8193
55 Ga0207665_10029628 3300025939 Bacteria 3617
56 Ga0207667_10128407 3300025949 Bacteria 2611
57 Ga0207668_10000108 3300025972 Bacteria 59119
58 Ga0207678_10280864 3300026067 Bacteria 1429
59 Ga0207702_10026183 3300026078 Bacteria 4841
60 Ga0209389_1000189 3300027296 Bacteria 46457
61 Ga0209589_1000001 3300027357 Bacteria 794224
62 Ga0209589_1000845 3300027357 Bacteria 46457
63 Ga0209489_100001 3300027361 Bacteria 794224
64 Ga0209489_101612 3300027361 Bacteria 46456
65 Ga0209700_100001 3300027363 Bacteria 794224
66 Ga0268266_10180955 3300028379 Bacteria 1919
67 Ga0307408_100187221 3300031548 Bacteria 1665
68 Ga0307516_10313634 3300031730 Bacteria 1241
69 Ga0307413_10133443 3300031824 Bacteria 1703
70 Ga0307410_10084996 3300031852 Bacteria 2232
71 Ga0307409_100090961 3300031995 Bacteria 2499
72 Ga0307416_100172817 3300032002 Bacteria 2014
73 Ga0307414_10093173 3300032004 Bacteria 2245
74 Ga0307411_10178207 3300032005 Bacteria 1610
75 Ga0307415_100161092 3300032126 Bacteria 1739
76 Ga0395899_0008156 3300037312 Bacteria 8069
77 Ga0395899_0037826 3300037312 Bacteria 3617
78 Ga0395900_0001215 3300037418 Bacteria 31847
79 Ga0395900_0081854 3300037418 Bacteria 3316
80 Ga0395900_0181215 3300037418 Bacteria 2140
81 Ga0395898_0003524 3300037466 Bacteria 17452
82 Ga0395898_0040500 3300037466 Bacteria 4607
83 Ga0395905_0006628 3300037471 Bacteria 11611
84 Ga0395905_0077708 3300037471 Bacteria 3110
85 Ga0395905_0115579 3300037471 Bacteria 2522
86 Ga0395901_0010448 3300038443 Bacteria 9403
87 Ga0395901_0014022 3300038443 Bacteria 8156
88 Ga0395901_0086589 3300038443 Bacteria 3276
89 Ga0439465_0000138 3300041413 Bacteria 17895
90 Ga0439465_0001127 3300041413 Bacteria 8559
91 Ga0439465_0002649 3300041413 Bacteria 5849
92 Ga0451835_0481916 3300041492 Bacteria 3287
93 Ga0451837_1555481 3300041494 Bacteria 4373
94 Ga0451837_1668903 3300041494 Bacteria 4473
95 Ga0451841_0216819 3300041498 Bacteria 6807
96 Ga0451845_0783151 3300041501 Bacteria 7305
97 Ga0451849_1427211 3300041505 Bacteria 3312
98 Ga0451843_0515067 3300041509 Bacteria 8287
99 Ga0451853_0912432 3300041512 Bacteria 11739
100 Ga0466960_0061926 3300044901 Bacteria 1838
101 Ga0495610_0017956 3300046512 Bacteria 4013
102 Ga0495642_0036125 3300046528 Bacteria 1996
103 Ga0495609_0020859 3300046538 Bacteria 3024
104 Ga0496111_0093699 3300048914 Bacteria 2202
105 Ga0496112_0324330 3300048915 Bacteria 1484
106 Ga0496126_0260040 3300048929 Bacteria 1444
107 Ga0501042_0102796 3300049578 Bacteria 2056
108 Ga0501080_0066256 3300049742 Bacteria 3359
109 nmdc:mga03n38_5309_c1 3300050490 Bacteria 4374
110 Ga0500646_0026609 3300053090 Bacteria 1569
111 Ga0500641_0038772 3300053096 Bacteria 1916
112 Ga0500645_007474 3300053730 Bacteria 3802
113 Ga0501082_0310115 3300060353 Bacteria 1374

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005331 Ga0070670_100000007 Ga0070670_100000007197 301
2 3300005347 Ga0070668_100000622 Ga0070668_10000062212 301
3 3300005618 Ga0068864_100000128 Ga0068864_1000001289 301
4 3300005841 Ga0068863_100000360 Ga0068863_10000036011 301
5 3300005842 Ga0068858_100011323 Ga0068858_1000113235 301
6 3300014968 Ga0157379_10005067 Ga0157379_100050677 301
7 3300025972 Ga0207668_10000108 Ga0207668_1000010838 301
8 3300025912 Ga0207707_10010100 Ga0207707_100101007 326
9 3300041413 Ga0439465_0000138 Ga0439465_0000138_13948_15048 337
10 3300041492 Ga0451835_0481916 Ga0451835_0481916_1542_2642 337
11 3300041494 Ga0451837_1555481 Ga0451837_1555481_40_1140 337
12 3300041494 Ga0451837_1668903 Ga0451837_1668903_3348_4448 337
13 3300041498 Ga0451841_0216819 Ga0451841_0216819_5024_6124 337
14 3300041501 Ga0451845_0783151 Ga0451845_0783151_684_1784 337
15 3300041505 Ga0451849_1427211 Ga0451849_1427211_1569_2669 337
16 3300041509 Ga0451843_0515067 Ga0451843_0515067_6763_7863 337
17 3300041512 Ga0451853_0912432 Ga0451853_0912432_10327_11427 337
18 3300046512 Ga0495610_0017956 Ga0495610_0017956_602_1702 337
19 3300013306 Ga0163162_10429984 Ga0163162_104299842 338
20 3300005548 Ga0070665_100011181 Ga0070665_1000111813 342
21 iso_pu_bacteria 2513237144 2513913141 343
22 3300005347 Ga0070668_100022347 Ga0070668_1000223474 344
23 3300005364 Ga0070673_100029658 Ga0070673_1000296581 344
24 3300005435 Ga0070714_100081991 Ga0070714_1000819912 344
25 3300005455 Ga0070663_100073537 Ga0070663_1000735372 344
26 3300005563 Ga0068855_100038575 Ga0068855_1000385755 344
27 3300005578 Ga0068854_100089810 Ga0068854_1000898102 344
28 3300005985 Ga0081539_10005756 Ga0081539_100057568 344
29 3300006048 Ga0075363_100009701 Ga0075363_1000097014 344
30 3300006173 Ga0070716_100033588 Ga0070716_1000335882 344
31 3300006941 Ga0099825_1021946 Ga0099825_10219462 344
32 3300006942 Ga0099824_1009305 Ga0099824_10093058 344
33 3300006942 Ga0099824_1014241 Ga0099824_10142414 344
34 3300006943 Ga0099822_1039146 Ga0099822_10391462 344
35 3300013102 Ga0157371_10035345 Ga0157371_100353453 344
36 3300013104 Ga0157370_10013938 Ga0157370_100139388 344
37 3300013296 Ga0157374_10060326 Ga0157374_100603264 344
38 3300013307 Ga0157372_10111436 Ga0157372_101114362 344
39 3300025315 Ga0207697_10034138 Ga0207697_100341381 344
40 3300025939 Ga0207665_10029628 Ga0207665_100296282 344
41 3300025949 Ga0207667_10128407 Ga0207667_101284073 344
42 3300026067 Ga0207678_10280864 Ga0207678_102808642 344
43 3300026078 Ga0207702_10026183 Ga0207702_100261833 344
44 3300027296 Ga0209389_1000189 Ga0209389_100018911 344
45 3300027357 Ga0209589_1000001 Ga0209589_1000001385 344
46 3300027357 Ga0209589_1000845 Ga0209589_100084511 344
47 3300027361 Ga0209489_100001 Ga0209489_100001385 344
48 3300027361 Ga0209489_101612 Ga0209489_10161211 344
49 3300027363 Ga0209700_100001 Ga0209700_100001385 344
50 3300031730 Ga0307516_10313634 Ga0307516_103136341 344
51 3300031824 Ga0307413_10133443 Ga0307413_101334431 344
52 3300031852 Ga0307410_10084996 Ga0307410_100849961 344
53 3300031995 Ga0307409_100090961 Ga0307409_1000909612 344
54 3300032005 Ga0307411_10178207 Ga0307411_101782072 344
55 3300032126 Ga0307415_100161092 Ga0307415_1001610921 344
56 3300037312 Ga0395899_0037826 Ga0395899_0037826_2181_3332 344
57 3300037418 Ga0395900_0181215 Ga0395900_0181215_814_1965 344
58 3300037466 Ga0395898_0040500 Ga0395898_0040500_2432_3583 344
59 3300037471 Ga0395905_0077708 Ga0395905_0077708_1700_2782 344
60 3300037471 Ga0395905_0115579 Ga0395905_0115579_989_2065 344
61 3300044901 Ga0466960_0061926 Ga0466960_0061926_26_1075 344
62 3300046528 Ga0495642_0036125 Ga0495642_0036125_10_1092 344
63 3300046538 Ga0495609_0020859 Ga0495609_0020859_1333_2406 344
64 3300048914 Ga0496111_0093699 Ga0496111_0093699_827_1903 344
65 3300048915 Ga0496112_0324330 Ga0496112_0324330_228_1304 344
66 3300048929 Ga0496126_0260040 Ga0496126_0260040_255_1331 344
67 3300049578 Ga0501042_0102796 Ga0501042_0102796_130_1206 344
68 3300050490 nmdc:mga03n38_5309_c1 nmdc:mga03n38_5309_c1_1647_2723 344
69 3300053090 Ga0500646_0026609 Ga0500646_0026609_248_1303 344
70 3300053096 Ga0500641_0038772 Ga0500641_0038772_729_1850 344
71 3300053730 Ga0500645_007474 Ga0500645_007474_1225_2301 344
72 iso_pu_bacteria 2510065019 2510135572 344
73 iso_pu_bacteria 2513237098 2513673667 344
74 iso_pu_bacteria 2516653077 2517042799 344
75 iso_pu_bacteria 2517093000 2517100034 344
76 iso_pu_bacteria 2517287029 2517409662 344
77 iso_pu_bacteria 2881665667 2881673022 344
78 iso_pu_bacteria 2885383462 2885384718 344
79 iso_pu_bacteria 2922361189 2922365813 344
80 3300002773 JGI25152J39213_1002554 JGI25152J39213_10025542 345
81 3300003187 JGI25151J46595_10000438 JGI25151J46595_1000043826 345
82 3300003215 JGI25153J46596_10000328 JGI25153J46596_1000032820 345
83 3300003322 rootL2_10197127 rootL2_101971275 345
84 3300003354 JGI25160J50197_1005524 JGI25160J50197_10055245 345
85 3300003771 Ga0055526_1000340 Ga0055526_10003407 345
86 3300003775 Ga0055524_1001105 Ga0055524_100110515 345
87 3300003792 Ga0055540_1000113 Ga0055540_100011385 345
88 3300005347 Ga0070668_100172818 Ga0070668_1001728181 345
89 3300005347 Ga0070668_100177211 Ga0070668_1001772112 345
90 3300005548 Ga0070665_100098448 Ga0070665_1000984482 345
91 3300009545 Ga0105237_10392398 Ga0105237_103923982 345
92 3300013104 Ga0157370_10078861 Ga0157370_100788613 345
93 3300025258 Ga0209129_1001806 Ga0209129_10018063 345
94 3300025273 Ga0209673_1001594 Ga0209673_10015944 345
95 3300025273 Ga0209673_1018521 Ga0209673_10185213 345
96 3300025284 Ga0209130_1000743 Ga0209130_100074311 345
97 3300025294 Ga0209025_1000456 Ga0209025_100045618 345
98 3300025295 Ga0209564_1000354 Ga0209564_100035462 345
99 3300025297 Ga0209758_1000396 Ga0209758_100039670 345
100 3300025297 Ga0209758_1002584 Ga0209758_10025846 345
101 3300025297 Ga0209758_1009518 Ga0209758_10095187 345
102 3300025299 Ga0209256_1002120 Ga0209256_100212015 345
103 3300025302 Ga0207426_1000750 Ga0207426_100075030 345
104 3300025302 Ga0207426_1001274 Ga0207426_100127423 345
105 3300025303 Ga0209051_1000287 Ga0209051_100028777 345
106 3300025304 Ga0209257_1001819 Ga0209257_10018199 345
107 3300028379 Ga0268266_10180955 Ga0268266_101809552 345
108 3300031548 Ga0307408_100187221 Ga0307408_1001872212 345
109 3300032002 Ga0307416_100172817 Ga0307416_1001728172 345
110 3300032004 Ga0307414_10093173 Ga0307414_100931731 345
111 3300037312 Ga0395899_0008156 Ga0395899_0008156_1191_2270 345
112 3300037418 Ga0395900_0001215 Ga0395900_0001215_28874_29953 345
113 3300037418 Ga0395900_0081854 Ga0395900_0081854_1382_2434 345
114 3300037466 Ga0395898_0003524 Ga0395898_0003524_1105_2184 345
115 3300037471 Ga0395905_0006628 Ga0395905_0006628_9227_10279 345
116 3300038443 Ga0395901_0010448 Ga0395901_0010448_7098_8177 345
117 3300038443 Ga0395901_0014022 Ga0395901_0014022_1529_2608 345
118 3300038443 Ga0395901_0086589 Ga0395901_0086589_885_1937 345
119 3300041413 Ga0439465_0001127 Ga0439465_0001127_6864_7955 345
120 3300041413 Ga0439465_0002649 Ga0439465_0002649_2925_4088 345
121 3300049742 Ga0501080_0066256 Ga0501080_0066256_509_1600 345
122 3300060353 Ga0501082_0310115 Ga0501082_0310115_162_1235 345
123 iso_pu_bacteria 2508501050 2508727276 345
124 iso_pu_bacteria 2508501114 2509077727 345
125 iso_pu_bacteria 2513237088 2513600267 345
126 iso_pu_bacteria 2513237138 2513868575 345
127 iso_pu_bacteria 2524023209 2524461609 345
128 iso_pu_bacteria 2643221599 2644008319 345
129 iso_pu_bacteria 2643221623 2644130549 345
130 iso_pu_bacteria 2721755685 2723569810 345
131 iso_pu_bacteria 2721755822 2724101357 345
132 iso_pu_bacteria 2721755823 2724113119 345
133 iso_pu_bacteria 2773857925 2774872396 345
134 iso_pu_bacteria 2775506901 2776261853 345
135 iso_pu_bacteria 2791355256 2793297964 345
136 iso_pu_bacteria 2791355261 2793330768 345
137 iso_pu_bacteria 2791355262 2793333900 345
138 iso_pu_bacteria 2835312727 2835313932 345
139 iso_pu_bacteria 2838061910 2838062174 345
140 iso_pu_bacteria 2842205361 2842209877 345
141 iso_pu_bacteria 2842264693 2842264845 345
142 iso_pu_bacteria 2842278818 2842283331 345
143 iso_pu_bacteria 2842298080 2842303189 345
144 iso_pu_bacteria 2842357229 2842361479 345
145 iso_pu_bacteria 2842402390 2842405917 345
146 iso_pu_bacteria 2842409023 2842412501 345
147 iso_pu_bacteria 2842415677 2842419145 345
148 iso_pu_bacteria 2842428310 2842429102 345
149 iso_pu_bacteria 2842434925 2842435715 345
150 iso_pu_bacteria 2842441272 2842441423 345
151 iso_pu_bacteria 2842447887 2842449821 345
152 iso_pu_bacteria 2842469257 2842470045 345
153 iso_pu_bacteria 2844533157 2844534843 345
154 iso_pu_bacteria 2854916844 2854917528 345
155 iso_pu_bacteria 2882456835 2882457053 345
156 iso_pu_bacteria 2923556063 2923561948 345
157 iso_pu_bacteria 2996887358 2996890676 345
158 iso_pu_bacteria 8005289223 8005290878 345
159 iso_pu_bacteria 8005321885 8005325203 345
160 iso_pu_bacteria 8005382845 8005383117 345
161 iso_pu_bacteria 8005395548 8005398718 345
162 iso_pu_bacteria 8005430974 8005436612 345
163 iso_pu_bacteria 8056382006 8056382144 345

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03358

FMN_red

NADPH-dependent FMN reductase

127

328

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
5wid-assembly2.cif.gz_B structure of a flavodoxin from the domain archaea 0.8105 86 323
4d02-assembly1.cif.gz_A the crystallographic structure of flavorubredoxin from escherichia coli 0.7946 80 324
5wid-assembly2.cif.gz_B structure of a flavodoxin from the domain archaea 0.7906 86 323
5mji-assembly1.cif.gz_A crystal structure of rosb with bound intermediate ohc-rp (8-demethyl-8-formylriboflavin-5'-phosphate) 0.7863 85 332
5veg-assembly3.cif.gz_C structure of a short-chain flavodoxin associated with a non-canonical pdu bacterial microcompartment 0.7796 83 324
ID Description Score Start End Superfamily
1ycgA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.7908 87 325 3.40.50.360
af_Q58142_244_391_3.40.50.360 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.7891 82 318 3.40.50.360
1ycgA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.7761 87 325 3.40.50.360
af_Q58142_244_391_3.40.50.360 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.7653 82 318 3.40.50.360
2oysB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.7645 85 331 3.40.50.360
ID Description Score Start End GO Terms
AF-A0A530LFN7-F1-model_v4 NADPH-dependent FMN reductase 0.9879 1 67
AF-A0A7G6SU18-F1-model_v4 Uncharacterized protein 0.9769 1 61
AF-A0A537KW43-F1-model_v4 Flavodoxin family protein 0.9557 1 343 GO:0016491
AF-A0A6G6WYS5-F1-model_v4 Flavodoxin family protein 0.9544 1 345 GO:0016491
AF-F2AGX0-F1-model_v4 deleted 0.9538 1 345

Feature Viewer

pLDDT pTM Quality
88.23 0.88 High
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Predicted Structure (AlphaFold2)

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