F241772

General Info

Members Datasets Scaffolds Average Seq Length
163 129 326 341

Family's Representative Sequence

Representative Sequence 3300025913|Ga0207695_10065367|Ga0207695_100653671
Length 394
Sequence MGHIEKDGELRRCDIRHAPGPSRTESLHQSRPMNEPTQLDPTLTINEIVAAGQQMKIDDTPGSPPETILTGDRPTGPLHLGHYVGSLANRVRLQREHKQTILIADLQALTDNAGRAADVRHNVREVMLDYLAVGIDPELTPIALQSAMPELAELTMLYLNLVTVARLERNPTLKAEIELRGFSRDIPAGFLAYPVSQAADITAFRATLVPVGDDQLPMIEQTNEIVRRLAHLAGRPVLPECRALLSATARLPGIDGRKASKSLGNAISLSASDDEIRRLVHAMFTDPGHVRASDPGRVEDNVVFAYLHAFDPDQHAVAELETHYRRGGLGDAALKQRLTRILQTFLAPIRERRALYAQNRDIVHDVLRDGTGASRPTARAVLEEVREVFALGSW

Samples

Sample ID Description Type Environment
1 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
33 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
69 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
70 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
71 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
75 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
77 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
78 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
79 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
80 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
81 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
82 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
83 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
84 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
85 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
86 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
87 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
88 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
89 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
90 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
91 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
92 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
93 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
96 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
97 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
98 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
99 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
100 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
101 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
102 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
103 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
104 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
107 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
108 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
109 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
110 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
111 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
117 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
119 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
120 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
121 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
122 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
123 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
124 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
125 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
126 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
127 2524614857 Deinococcus ficus DSM 19119 Isolate Rhizosphere
128 2739367875 Deinococcus ficus CC-FR2-10 Isolate Unclassified
129 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.16
Metatranscriptomes 0
Isolates 1.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.45
Nodule 0
Rhizoplane 1.84
Rhizosphere 92.64
Stem 0
Stem Tuber 0
Unclassified 5.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207695_10065367 3300025913 Bacteria 3740
2 MBSR1b_contig_13888960 2162886012 Unclassified 1290
3 MBSR1b_contig_14012652 2162886012 Bacteria 2576
4 Ga0055532_1000358 3300003758 Bacteria 24185
5 Ga0065715_10104137 3300005293 Unclassified 2984
6 Ga0065715_10111407 3300005293 Bacteria 2575
7 Ga0070658_10068383 3300005327 Bacteria 2903
8 Ga0068869_100139735 3300005334 Bacteria 1869
9 Ga0070680_100167623 3300005336 Bacteria 1847
10 Ga0070682_100004295 3300005337 Bacteria 7912
11 Ga0070691_10002063 3300005341 Bacteria 8869
12 Ga0070692_10198392 3300005345 Bacteria 1174
13 Ga0070674_100071066 3300005356 Bacteria 2461
14 Ga0070701_10006323 3300005438 Bacteria 4978
15 Ga0070705_100019397 3300005440 Bacteria 3579
16 Ga0070681_10002393 3300005458 Bacteria 17150
17 Ga0070681_10006714 3300005458 Bacteria 11195
18 Ga0070681_10445670 3300005458 Bacteria 1207
19 Ga0070706_100000132 3300005467 Bacteria 92406
20 Ga0070698_100235101 3300005471 Bacteria 1765
21 Ga0070699_100050218 3300005518 Bacteria 3611
22 Ga0070679_100002002 3300005530 Bacteria 18297
23 Ga0070679_100083834 3300005530 Bacteria 3176
24 Ga0070679_100195878 3300005530 Bacteria 1988
25 Ga0070679_100197820 3300005530 Bacteria 1977
26 Ga0070684_100038003 3300005535 Bacteria 4133
27 Ga0070697_100192381 3300005536 Bacteria 1732
28 Ga0068853_100063771 3300005539 Bacteria 3192
29 Ga0070695_100020131 3300005545 Bacteria 4071
30 Ga0070696_100048190 3300005546 Bacteria 2957
31 Ga0068855_100019503 3300005563 Bacteria 8149
32 Ga0070664_100024274 3300005564 Bacteria 5014
33 Ga0070664_100054803 3300005564 Bacteria 3384
34 Ga0068857_100104839 3300005577 Bacteria 2539
35 Ga0068859_100113986 3300005617 Bacteria 2767
36 Ga0068870_10112743 3300005840 Bacteria 1555
37 Ga0068858_100260764 3300005842 Bacteria 1647
38 Ga0068860_100003240 3300005843 Bacteria 16774
39 Ga0068862_100099745 3300005844 Bacteria 2539
40 Ga0081538_10012800 3300005981 Bacteria 6698
41 Ga0075365_10215398 3300006038 Bacteria 1347
42 Ga0070716_100216866 3300006173 Bacteria 1283
43 Ga0075428_100008294 3300006844 Bacteria 11515
44 Ga0075428_100293456 3300006844 Unclassified 1749
45 Ga0075430_100008432 3300006846 Bacteria 8708
46 Ga0075431_100000957 3300006847 Bacteria 25586
47 Ga0075431_100005738 3300006847 Bacteria 12275
48 Ga0075431_100509433 3300006847 Bacteria 1194
49 Ga0075433_10077246 3300006852 Bacteria 2933
50 Ga0075433_10140599 3300006852 Bacteria 2146
51 Ga0075434_100359541 3300006871 Unclassified 1477
52 Ga0075429_100057451 3300006880 Bacteria 3388
53 Ga0097620_100113982 3300006931 Bacteria 2767
54 Ga0105247_10095958 3300009101 Bacteria 1889
55 Ga0114129_10007950 3300009147 Bacteria 15093
56 Ga0105243_10196710 3300009148 Bacteria 1765
57 Ga0105241_10052625 3300009174 Bacteria 3110
58 Ga0105242_10002786 3300009176 Bacteria 13691
59 Ga0157370_10106688 3300013104 Bacteria 2621
60 Ga0157369_10014776 3300013105 Bacteria 8808
61 Ga0157372_10536453 3300013307 Bacteria 1364
62 Ga0157376_10000261 3300014969 Bacteria 35920
63 Ga0209676_1003290 3300025292 Bacteria 10131
64 Ga0207643_10049384 3300025908 Bacteria 2384
65 Ga0207707_10001283 3300025912 Bacteria 23435
66 Ga0207707_10094820 3300025912 Bacteria 2608
67 Ga0207707_10417558 3300025912 Bacteria 1151
68 Ga0207660_10162963 3300025917 Bacteria 1722
69 Ga0207652_10121608 3300025921 Bacteria 2323
70 Ga0207652_10161183 3300025921 Bacteria 2011
71 Ga0207652_10332555 3300025921 Bacteria 1372
72 Ga0207650_10076532 3300025925 Bacteria 2528
73 Ga0207689_10055506 3300025942 Bacteria 3260
74 Ga0207661_10049292 3300025944 Bacteria 3351
75 Ga0207679_10122439 3300025945 Bacteria 2073
76 Ga0207667_10010943 3300025949 Bacteria 10573
77 Ga0207639_10034522 3300026041 Bacteria 3738
78 Ga0207708_10210008 3300026075 Bacteria 1556
79 Ga0207708_10269227 3300026075 Bacteria 1377
80 Ga0207674_10030376 3300026116 Bacteria 5681
81 Ga0207674_10046209 3300026116 Bacteria 4472
82 Ga0207674_10083880 3300026116 Bacteria 3185
83 Ga0207428_10003979 3300027907 Bacteria 14177
84 Ga0268265_10099124 3300028380 Bacteria 2348
85 Ga0268264_10001485 3300028381 Bacteria 21899
86 Ga0268264_10400547 3300028381 Bacteria 1319
87 Ga0265338_10003118 3300028800 Bacteria 23705
88 Ga0307413_10010872 3300031824 Bacteria 4441
89 Ga0307410_10024144 3300031852 Bacteria 3794
90 Ga0307406_10188746 3300031901 Bacteria 1507
91 Ga0307407_10190961 3300031903 Bacteria 1365
92 Ga0307416_100319991 3300032002 Bacteria 1553
93 Ga0307415_100123755 3300032126 Bacteria 1945
94 Ga0373934_0031955 3300035086 Bacteria 2063
95 Ga0373937_0030710 3300036401 Bacteria 4866
96 Ga0395899_0025840 3300037312 Bacteria 4433
97 Ga0395899_0054091 3300037312 Bacteria 2971
98 Ga0395900_0061879 3300037418 Bacteria 3848
99 Ga0451577_0300349 3300042876 Bacteria 1455
100 Ga0466966_0069034 3300044684 Bacteria 2217
101 Ga0453684_0000871 3300044712 Bacteria 101096
102 Ga0453684_0002579 3300044712 Bacteria 43395
103 Ga0453684_0010976 3300044712 Bacteria 15311
104 Ga0453684_0464673 3300044712 Unclassified 1406
105 Ga0466959_0007255 3300045049 Bacteria 7764
106 Ga0451576_0000028 3300045051 Unclassified 408351
107 Ga0451576_0243498 3300045051 Bacteria 1879
108 Ga0451576_0268445 3300045051 Unclassified 1783
109 Ga0495617_020154 3300046452 Bacteria 2253
110 Ga0495638_0000031 3300046460 Bacteria 296510
111 Ga0495638_0000384 3300046460 Bacteria 54573
112 Ga0495651_0104855 3300046462 Bacteria 2098
113 Ga0495580_0031286 3300046472 Bacteria 3846
114 Ga0495585_0054667 3300046492 Bacteria 2207
115 Ga0495583_0000134 3300046506 Bacteria 124077
116 Ga0495610_0074112 3300046512 Unclassified 1580
117 Ga0495643_0006128 3300046522 Bacteria 7989
118 Ga0495643_0014764 3300046522 Bacteria 4637
119 Ga0495643_0106341 3300046522 Bacteria 1432
120 Ga0495652_0141238 3300046529 Bacteria 1893
121 Ga0495587_0024751 3300046536 Bacteria 3676
122 Ga0495609_0002664 3300046538 Bacteria 10816
123 Ga0495645_0008016 3300046543 Bacteria 7355
124 Ga0495633_0000303 3300046558 Bacteria 56042
125 Ga0495625_0002050 3300046660 Bacteria 22620
126 Ga0495625_0002057 3300046660 Bacteria 22565
127 Ga0495661_0084141 3300046665 Bacteria 1827
128 Ga0495599_0011487 3300046678 Bacteria 5443
129 Ga0495600_0070293 3300046809 Bacteria 2287
130 Ga0495660_0000001 3300046810 Bacteria 1431121
131 Ga0495675_0089705 3300047444 Bacteria 1930
132 Ga0495681_0000157 3300047470 Bacteria 57202
133 Ga0495686_0000239 3300047472 Bacteria 99803
134 Ga0496102_0036865 3300048905 Bacteria 4408
135 Ga0496102_0079835 3300048905 Bacteria 3013
136 Ga0496106_0452663 3300048909 Bacteria 1031
137 Ga0496116_0009860 3300048919 Bacteria 8082
138 Ga0496117_0000781 3300048920 Bacteria 49990
139 Ga0496118_0009897 3300048921 Bacteria 9532
140 Ga0496126_0000038 3300048929 Bacteria 347738
141 Ga0495682_0000604 3300049460 Bacteria 24203
142 Ga0501032_0104160 3300049569 Bacteria 1880
143 Ga0501033_0021858 3300049570 Bacteria 4828
144 Ga0501036_0065249 3300049572 Bacteria 3082
145 Ga0501046_0182342 3300049580 Bacteria 1569
146 Ga0501047_0037680 3300049581 Bacteria 4676
147 Ga0501070_0041471 3300049586 Bacteria 3835
148 Ga0501035_0024103 3300049822 Bacteria 5583
149 nmdc:mga05p37_24835_c1 3300050507 Bacteria 7286
150 nmdc:mga05p37_5249_c1 3300050507 Bacteria 15211
151 nmdc:mga09592_16781_c1 3300050508 Bacteria 5994
152 nmdc:mga0qj67_18251_c1 3300050509 Bacteria 5346
153 nmdc:mga06r32_238_c2 3300050510 Bacteria 43556
154 nmdc:mga06r32_52771_c1 3300050510 Bacteria 3895
155 nmdc:mga08y16_8713_c1 3300050511 Bacteria 10636
156 nmdc:mga0n895_349383_c1 3300050512 Unclassified 1498
157 nmdc:mga0n895_65779_c1 3300050512 Bacteria 3589
158 nmdc:mga0rr50_373075_c1 3300050513 Bacteria 1202
159 Ga0495595_0073539 3300053084 Bacteria 1619
160 Ga0500636_0075199 3300053177 Bacteria 1954
161 2526062585 2524614857 Bacteria 4146328
162 2740061670 2739367875 Bacteria 4157290
163 2852683654 2852680915 Bacteria 4100189
164 Ga0207695_10065367
165 MBSR1b_contig_13888960
166 MBSR1b_contig_14012652
167 Ga0055532_1000358
168 Ga0065715_10104137
169 Ga0065715_10111407
170 Ga0070658_10068383
171 Ga0068869_100139735
172 Ga0070680_100167623
173 Ga0070682_100004295
174 Ga0070691_10002063
175 Ga0070692_10198392
176 Ga0070674_100071066
177 Ga0070701_10006323
178 Ga0070705_100019397
179 Ga0070681_10002393
180 Ga0070681_10006714
181 Ga0070681_10445670
182 Ga0070706_100000132
183 Ga0070698_100235101
184 Ga0070699_100050218
185 Ga0070679_100002002
186 Ga0070679_100083834
187 Ga0070679_100195878
188 Ga0070679_100197820
189 Ga0070684_100038003
190 Ga0070697_100192381
191 Ga0068853_100063771
192 Ga0070695_100020131
193 Ga0070696_100048190
194 Ga0068855_100019503
195 Ga0070664_100024274
196 Ga0070664_100054803
197 Ga0068857_100104839
198 Ga0068859_100113986
199 Ga0068870_10112743
200 Ga0068858_100260764
201 Ga0068860_100003240
202 Ga0068862_100099745
203 Ga0081538_10012800
204 Ga0075365_10215398
205 Ga0070716_100216866
206 Ga0075428_100008294
207 Ga0075428_100293456
208 Ga0075430_100008432
209 Ga0075431_100000957
210 Ga0075431_100005738
211 Ga0075431_100509433
212 Ga0075433_10077246
213 Ga0075433_10140599
214 Ga0075434_100359541
215 Ga0075429_100057451
216 Ga0097620_100113982
217 Ga0105247_10095958
218 Ga0114129_10007950
219 Ga0105243_10196710
220 Ga0105241_10052625
221 Ga0105242_10002786
222 Ga0157370_10106688
223 Ga0157369_10014776
224 Ga0157372_10536453
225 Ga0157376_10000261
226 Ga0209676_1003290
227 Ga0207643_10049384
228 Ga0207707_10001283
229 Ga0207707_10094820
230 Ga0207707_10417558
231 Ga0207660_10162963
232 Ga0207652_10121608
233 Ga0207652_10161183
234 Ga0207652_10332555
235 Ga0207650_10076532
236 Ga0207689_10055506
237 Ga0207661_10049292
238 Ga0207679_10122439
239 Ga0207667_10010943
240 Ga0207639_10034522
241 Ga0207708_10210008
242 Ga0207708_10269227
243 Ga0207674_10030376
244 Ga0207674_10046209
245 Ga0207674_10083880
246 Ga0207428_10003979
247 Ga0268265_10099124
248 Ga0268264_10001485
249 Ga0268264_10400547
250 Ga0265338_10003118
251 Ga0307413_10010872
252 Ga0307410_10024144
253 Ga0307406_10188746
254 Ga0307407_10190961
255 Ga0307416_100319991
256 Ga0307415_100123755
257 Ga0373934_0031955
258 Ga0373937_0030710
259 Ga0395899_0025840
260 Ga0395899_0054091
261 Ga0395900_0061879
262 Ga0451577_0300349
263 Ga0466966_0069034
264 Ga0453684_0000871
265 Ga0453684_0002579
266 Ga0453684_0010976
267 Ga0453684_0464673
268 Ga0466959_0007255
269 Ga0451576_0000028
270 Ga0451576_0243498
271 Ga0451576_0268445
272 Ga0495617_020154
273 Ga0495638_0000031
274 Ga0495638_0000384
275 Ga0495651_0104855
276 Ga0495580_0031286
277 Ga0495585_0054667
278 Ga0495583_0000134
279 Ga0495610_0074112
280 Ga0495643_0006128
281 Ga0495643_0014764
282 Ga0495643_0106341
283 Ga0495652_0141238
284 Ga0495587_0024751
285 Ga0495609_0002664
286 Ga0495645_0008016
287 Ga0495633_0000303
288 Ga0495625_0002050
289 Ga0495625_0002057
290 Ga0495661_0084141
291 Ga0495599_0011487
292 Ga0495600_0070293
293 Ga0495660_0000001
294 Ga0495675_0089705
295 Ga0495681_0000157
296 Ga0495686_0000239
297 Ga0496102_0036865
298 Ga0496102_0079835
299 Ga0496106_0452663
300 Ga0496116_0009860
301 Ga0496117_0000781
302 Ga0496118_0009897
303 Ga0496126_0000038
304 Ga0495682_0000604
305 Ga0501032_0104160
306 Ga0501033_0021858
307 Ga0501036_0065249
308 Ga0501046_0182342
309 Ga0501047_0037680
310 Ga0501070_0041471
311 Ga0501035_0024103
312 nmdc:mga05p37_24835_c1
313 nmdc:mga05p37_5249_c1
314 nmdc:mga09592_16781_c1
315 nmdc:mga0qj67_18251_c1
316 nmdc:mga06r32_238_c2
317 nmdc:mga06r32_52771_c1
318 nmdc:mga08y16_8713_c1
319 nmdc:mga0n895_349383_c1
320 nmdc:mga0n895_65779_c1
321 nmdc:mga0rr50_373075_c1
322 Ga0495595_0073539
323 Ga0500636_0075199
324 2526062585
325 2740061670
326 2852683654

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00579

tRNA-synt_1b

tRNA synthetases class I (W and Y)

63

347

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2a4m-assembly1.cif.gz_A structure of trprs ii bound to atp 0.9711 13 341
2a4m-assembly1.cif.gz_A structure of trprs ii bound to atp 0.9625 13 341
2g36-assembly1.cif.gz_A-2 crystal structure of tryptophanyl-trna synthetase (ec 6.1.1.2) (tryptophan-trna ligase)(trprs) (tm0492) from thermotoga maritima at 2.50 a resolution 0.9579 14 339
6ncr-assembly3.cif.gz_A crystal structure of tryptophan-trna ligase from chlamydia trachomatis with bound l-tryptophan 0.9507 13 338
2g36-assembly1.cif.gz_A-2 crystal structure of tryptophanyl-trna synthetase (ec 6.1.1.2) (tryptophan-trna ligase)(trprs) (tm0492) from thermotoga maritima at 2.50 a resolution 0.9493 14 339
ID Description Score Start End Superfamily
1yi8C02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9749 210 306 1.10.240.10
6ncrB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9665 199 306 1.10.240.10
1yi8C02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9651 210 306 1.10.240.10
1yiaC02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9621 199 306 1.10.240.10
1yi8A02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9585 199 306 1.10.240.10
ID Description Score Start End GO Terms
AF-A0A2H5YJ65-F1-model_v4 Tryptophan--tRNA ligase (EC 6.1.1.2) (Tryptophanyl-tRNA synthetase) (TrpRS) 0.9844 13 343 GO:0004830
GO:0005524
GO:0005829
GO:0006436
AF-A0A136LYZ7-F1-model_v4 Tryptophan--tRNA ligase (EC 6.1.1.2) 0.9799 14 341 GO:0004830
GO:0005524
GO:0005829
GO:0006436
AF-A0A2M7ARF7-F1-model_v4 Tryptophan--tRNA ligase (EC 6.1.1.2) 0.9769 12 340 GO:0002161
GO:0004830
GO:0005524
GO:0005829
GO:0006436
AF-A0A3L7XAL4-F1-model_v4 Tryptophan--tRNA ligase (EC 6.1.1.2) 0.9769 44 338 GO:0004830
GO:0005524
GO:0005829
GO:0006436
AF-A0A2M8A056-F1-model_v4 Tryptophan--tRNA ligase (EC 6.1.1.2) 0.9762 12 338 GO:0004830
GO:0005524
GO:0005829
GO:0006436

Map