F239650

General Info

Members Datasets Scaffolds Average Seq Length
162 118 324 492

Family's Representative Sequence

Representative Sequence 3300031838|Ga0307518_10030313|Ga0307518_100303134
Length 546
Sequence MGLPILPAKRPHSGALRVSGRLPSARKAKLPAMTGTMLDPATGSTTELGQPPVPAKFAMLGLTFDDVLLLPAESDVLPSRVDTSTRLSRNITLRIPLVSAAMDTVTEARMAIAMARQGGIGILQRNLSIDEQTRQAETVKRSEAGMVTDPVTCSPDDTLAEVDARCARFRISGLPVTDADGTLVGIITNRDMRFELDHTRPVREVMTKAPLITAQVGVTAEAALGLLRRHKIEKLPLVDGAGKLRGLITVKDFVKTEQYPMATKDPDGRLLCGAAVGVGDDAYQRAMSLAEAGVDVLVVDTAHGHSRNVLAMIARIKSELGDTVDVIGGNVATRAGAQALVEAGADAVKVGVGPGSICTTRVVAGVGVPQISAIYEADQAARAAGVPVIGDGGIQYSGDIAKAIAAGASTVMLGSLLSGTAEAPGEVILHQGKQYKTYRGMGSLAAMTSRGEAKSYSKDRYAQDDVLAEDKLVPEGIEGRVPFRGPLAQVVHQLVGGLRSGMGYTGANTIPELQRAQLVRITAAGLKESHPHDIAMTVEAPNYSSR

Samples

Sample ID Description Type Environment
1 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
35 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
36 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
61 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
62 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
63 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
64 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
65 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
66 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
67 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
68 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
71 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
74 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
75 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
76 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
77 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
78 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
79 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
80 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
83 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
84 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
85 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
86 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
87 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
88 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
92 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
93 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
98 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
99 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
100 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
101 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
102 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
103 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
104 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
105 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
106 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
107 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
108 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
109 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
110 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
111 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
112 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
113 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
114 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
115 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
116 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
117 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
118 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.12
Metatranscriptomes 0
Isolates 9.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.17
Nodule 0
Rhizoplane 5.56
Rhizosphere 69.75
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307518_10030313 3300031838 Bacteria 3917
2 LJQas_1003783 3300000549 Bacteria 2003
3 JGI25406J46586_10000645 3300003203 Bacteria 16286
4 Ga0070658_10102846 3300005327 Bacteria 2362
5 Ga0070682_100030026 3300005337 Bacteria 3277
6 Ga0068868_100022267 3300005338 Bacteria 4780
7 Ga0068868_100069966 3300005338 Bacteria 2797
8 Ga0070660_100058427 3300005339 Bacteria 2989
9 Ga0070668_100034782 3300005347 Bacteria 3840
10 Ga0070675_100088977 3300005354 Bacteria 2584
11 Ga0070671_100023436 3300005355 Bacteria 5052
12 Ga0070671_100042033 3300005355 Bacteria 3799
13 Ga0070659_100036245 3300005366 Bacteria 3844
14 Ga0070659_100096076 3300005366 Bacteria 2380
15 Ga0070714_100012258 3300005435 Bacteria 6839
16 Ga0070700_100018526 3300005441 Bacteria 4003
17 Ga0068867_100071315 3300005459 Bacteria 2599
18 Ga0068853_100019895 3300005539 Bacteria 5575
19 Ga0070665_100006265 3300005548 Bacteria 12163
20 Ga0070665_100213164 3300005548 Bacteria 1932
21 Ga0070664_100056754 3300005564 Bacteria 3327
22 Ga0068854_100022234 3300005578 Bacteria 4316
23 Ga0070702_100037277 3300005615 Bacteria 2699
24 Ga0068852_100055387 3300005616 Bacteria 3423
25 Ga0068852_100063039 3300005616 Bacteria 3226
26 Ga0068859_100106112 3300005617 Bacteria 2868
27 Ga0068861_100113410 3300005719 Bacteria 2175
28 Ga0068860_100022448 3300005843 Bacteria 6104
29 Ga0068862_100034669 3300005844 Bacteria 4272
30 Ga0081455_10000082 3300005937 Bacteria 103704
31 Ga0081539_10000124 3300005985 Bacteria 180973
32 Ga0075365_10009467 3300006038 Bacteria 5602
33 Ga0075363_100010451 3300006048 Bacteria 4411
34 Ga0075363_100012225 3300006048 Bacteria 4132
35 Ga0075364_10015945 3300006051 Bacteria 4666
36 Ga0075364_10053037 3300006051 Bacteria 2650
37 Ga0097620_100106127 3300006931 Bacteria 2868
38 Ga0105245_10039281 3300009098 Bacteria 4213
39 Ga0105242_10003931 3300009176 Bacteria 11548
40 Ga0105248_10043048 3300009177 Bacteria 5064
41 Ga0105032_100683 3300009979 Bacteria 3310
42 Ga0105246_10046013 3300011119 Bacteria 2975
43 Ga0157378_10046780 3300013297 Bacteria 3845
44 Ga0163162_10127980 3300013306 Bacteria 2647
45 Ga0157372_10177779 3300013307 Bacteria 2463
46 Ga0157375_10106930 3300013308 Bacteria 2890
47 Ga0157379_10055505 3300014968 Bacteria 3539
48 Ga0207642_10010307 3300025899 Bacteria 3289
49 Ga0207688_10017515 3300025901 Bacteria 3894
50 Ga0207688_10037134 3300025901 Bacteria 2701
51 Ga0207688_10047769 3300025901 Bacteria 2390
52 Ga0207680_10067817 3300025903 Bacteria 2199
53 Ga0207705_10009462 3300025909 Bacteria 7086
54 Ga0207662_10025045 3300025918 Bacteria 3435
55 Ga0207657_10045521 3300025919 Bacteria 3850
56 Ga0207664_10000867 3300025929 Bacteria 20485
57 Ga0207644_10011157 3300025931 Bacteria 5937
58 Ga0207644_10022234 3300025931 Bacteria 4331
59 Ga0207706_10022853 3300025933 Bacteria 5612
60 Ga0207691_10085354 3300025940 Bacteria 2833
61 Ga0207691_10127203 3300025940 Bacteria 2253
62 Ga0207689_10012834 3300025942 Bacteria 7153
63 Ga0207668_10002976 3300025972 Bacteria 9929
64 Ga0207668_10023273 3300025972 Bacteria 3978
65 Ga0207640_10016510 3300025981 Bacteria 4296
66 Ga0207703_10075853 3300026035 Bacteria 2787
67 Ga0207678_10070525 3300026067 Bacteria 2996
68 Ga0207648_10062162 3300026089 Bacteria 3256
69 Ga0207675_100061595 3300026118 Bacteria 3502
70 Ga0207675_100082036 3300026118 Bacteria 3024
71 Ga0268266_10021026 3300028379 Bacteria 5562
72 Ga0268266_10115042 3300028379 Bacteria 2387
73 Ga0268266_10122498 3300028379 Bacteria 2315
74 Ga0268264_10007965 3300028381 Bacteria 8817
75 Ga0268264_10030838 3300028381 Bacteria 4395
76 Ga0307511_10001552 3300030521 Bacteria 24337
77 Ga0307512_10034314 3300030522 Bacteria 4342
78 Ga0265316_10021896 3300031344 Bacteria 5403
79 Ga0307513_10001197 3300031456 Bacteria 37689
80 Ga0316575_10004511 3300031665 Bacteria 4902
81 Ga0316575_10034298 3300031665 Bacteria 1993
82 Ga0265314_10005599 3300031711 Bacteria 11289
83 Ga0316576_10000190 3300031727 Bacteria 25736
84 Ga0316576_10017774 3300031727 Bacteria 4840
85 Ga0316576_10021477 3300031727 Bacteria 4466
86 Ga0316578_10007446 3300031728 Bacteria 5493
87 Ga0316578_10036523 3300031728 Bacteria 2827
88 Ga0307413_10000420 3300031824 Bacteria 13710
89 Ga0307416_100132705 3300032002 Bacteria 2246
90 Ga0307507_10123511 3300033179 Bacteria 2060
91 Ga0316574_0005102 3300035398 Bacteria 6978
92 Ga0316584_0033232 3300036712 Bacteria 3820
93 Ga0316584_0251086 3300036712 Bacteria 1292
94 Ga0436364_0505542 3300037853 Bacteria 3255
95 Ga0400485_12476 3300038735 Bacteria 18634
96 Ga0400483_025911 3300039062 Bacteria 22819
97 Ga0400483_087244 3300039062 Bacteria 37074
98 Ga0400483_125343 3300039062 Bacteria 10072
99 Ga0400483_171128 3300039062 Bacteria 27069
100 Ga0400483_185377 3300039062 Bacteria 2243
101 Ga0400483_187994 3300039062 Bacteria 4233
102 Ga0400483_200780 3300039062 Bacteria 45688
103 Ga0400483_202079 3300039062 Bacteria 4175
104 Ga0400483_267489 3300039062 Bacteria 6446
105 Ga0436365_0614041 3300039437 Bacteria 3690
106 Ga0451789_0563533 3300041443 Bacteria 2219
107 Ga0451800_1457472 3300041459 Bacteria 1826
108 Ga0451837_0149352 3300041494 Bacteria 1660
109 Ga0451853_0882841 3300041512 Bacteria 4854
110 Ga0451577_0000026 3300042876 Bacteria 400540
111 Ga0451577_0003526 3300042876 Bacteria 17323
112 Ga0451577_0030650 3300042876 Bacteria 4858
113 Ga0451577_0063481 3300042876 Bacteria 3294
114 Ga0453683_0025453 3300044673 Bacteria 3759
115 Ga0466965_0013448 3300044683 Bacteria 3861
116 Ga0466961_0007550 3300044693 Bacteria 6921
117 Ga0453684_0000062 3300044712 Bacteria 487590
118 Ga0453684_0000071 3300044712 Bacteria 448904
119 Ga0453684_0000719 3300044712 Bacteria 116945
120 Ga0453684_0001034 3300044712 Bacteria 88980
121 Ga0453684_0001079 3300044712 Bacteria 86824
122 Ga0453684_0019247 3300044712 Bacteria 10408
123 Ga0453684_0050598 3300044712 Bacteria 5462
124 Ga0466971_0036548 3300044719 Bacteria 2203
125 Ga0466970_0020549 3300044765 Bacteria 3432
126 Ga0466970_0026809 3300044765 Bacteria 3021
127 Ga0466960_0012316 3300044901 Bacteria 3605
128 Ga0466959_0005219 3300045049 Bacteria 8864
129 Ga0451576_0038509 3300045051 Bacteria 5059
130 Ga0451576_0340561 3300045051 Bacteria 1570
131 Ga0466967_0001142 3300045976 Bacteria 14829
132 Ga0466967_0009414 3300045976 Bacteria 7245
133 Ga0495672_0055882 3300047320 Bacteria 2301
134 Ga0495684_0143479 3300047471 Bacteria 1790
135 Ga0496101_0031554 3300048904 Bacteria 3726
136 Ga0496107_0043655 3300048910 Bacteria 3221
137 Ga0496110_0276758 3300048913 Bacteria 1528
138 Ga0496111_0101821 3300048914 Bacteria 2111
139 Ga0496114_0010520 3300048917 Bacteria 7362
140 Ga0496114_0065687 3300048917 Bacteria 3040
141 Ga0496114_0184914 3300048917 Bacteria 1821
142 nmdc:mga00v17_14218_c1 3300050491 Bacteria 4438
143 nmdc:mga00v17_21774_c1 3300050491 Bacteria 3690
144 nmdc:mga06z11_48080_c1 3300050494 Bacteria 2170
145 nmdc:mga04h51_6191_c1 3300050495 Bacteria 3089
146 Ga0500559_0002293 3300053136 Bacteria 10060
147 2558913480 2558860112 Bacteria 9931328
148 2795781520 2795385470 Bacteria 8317180
149 2795795375 2795385472 Bacteria 6627535
150 2809586316 2808606522 Bacteria 9488490
151 2816505501 2816332139 Bacteria 9138787
152 2863070383 2863067949 Bacteria 8541735
153 2866555490 2866552031 Bacteria 5824618
154 2866616981 2866612099 Bacteria 7543886
155 2870783416 2870782633 Bacteria 9624083
156 2891331434 2891326441 Bacteria 6439512
157 2899364539 2899359706 Bacteria 10940472
158 2915359602 2915358134 Bacteria 6050864
159 2917737764 2917736166 Bacteria 9690793
160 8047717701 8047710418 Bacteria 11023148
161 8054475837 8054472261 Bacteria 7464355
162 8056208456 8056207758 Bacteria 8639239
163 Ga0307518_10030313
164 LJQas_1003783
165 JGI25406J46586_10000645
166 Ga0070658_10102846
167 Ga0070682_100030026
168 Ga0068868_100022267
169 Ga0068868_100069966
170 Ga0070660_100058427
171 Ga0070668_100034782
172 Ga0070675_100088977
173 Ga0070671_100023436
174 Ga0070671_100042033
175 Ga0070659_100036245
176 Ga0070659_100096076
177 Ga0070714_100012258
178 Ga0070700_100018526
179 Ga0068867_100071315
180 Ga0068853_100019895
181 Ga0070665_100006265
182 Ga0070665_100213164
183 Ga0070664_100056754
184 Ga0068854_100022234
185 Ga0070702_100037277
186 Ga0068852_100055387
187 Ga0068852_100063039
188 Ga0068859_100106112
189 Ga0068861_100113410
190 Ga0068860_100022448
191 Ga0068862_100034669
192 Ga0081455_10000082
193 Ga0081539_10000124
194 Ga0075365_10009467
195 Ga0075363_100010451
196 Ga0075363_100012225
197 Ga0075364_10015945
198 Ga0075364_10053037
199 Ga0097620_100106127
200 Ga0105245_10039281
201 Ga0105242_10003931
202 Ga0105248_10043048
203 Ga0105032_100683
204 Ga0105246_10046013
205 Ga0157378_10046780
206 Ga0163162_10127980
207 Ga0157372_10177779
208 Ga0157375_10106930
209 Ga0157379_10055505
210 Ga0207642_10010307
211 Ga0207688_10017515
212 Ga0207688_10037134
213 Ga0207688_10047769
214 Ga0207680_10067817
215 Ga0207705_10009462
216 Ga0207662_10025045
217 Ga0207657_10045521
218 Ga0207664_10000867
219 Ga0207644_10011157
220 Ga0207644_10022234
221 Ga0207706_10022853
222 Ga0207691_10085354
223 Ga0207691_10127203
224 Ga0207689_10012834
225 Ga0207668_10002976
226 Ga0207668_10023273
227 Ga0207640_10016510
228 Ga0207703_10075853
229 Ga0207678_10070525
230 Ga0207648_10062162
231 Ga0207675_100061595
232 Ga0207675_100082036
233 Ga0268266_10021026
234 Ga0268266_10115042
235 Ga0268266_10122498
236 Ga0268264_10007965
237 Ga0268264_10030838
238 Ga0307511_10001552
239 Ga0307512_10034314
240 Ga0265316_10021896
241 Ga0307513_10001197
242 Ga0316575_10004511
243 Ga0316575_10034298
244 Ga0265314_10005599
245 Ga0316576_10000190
246 Ga0316576_10017774
247 Ga0316576_10021477
248 Ga0316578_10007446
249 Ga0316578_10036523
250 Ga0307413_10000420
251 Ga0307416_100132705
252 Ga0307507_10123511
253 Ga0316574_0005102
254 Ga0316584_0033232
255 Ga0316584_0251086
256 Ga0436364_0505542
257 Ga0400485_12476
258 Ga0400483_025911
259 Ga0400483_087244
260 Ga0400483_125343
261 Ga0400483_171128
262 Ga0400483_185377
263 Ga0400483_187994
264 Ga0400483_200780
265 Ga0400483_202079
266 Ga0400483_267489
267 Ga0436365_0614041
268 Ga0451789_0563533
269 Ga0451800_1457472
270 Ga0451837_0149352
271 Ga0451853_0882841
272 Ga0451577_0000026
273 Ga0451577_0003526
274 Ga0451577_0030650
275 Ga0451577_0063481
276 Ga0453683_0025453
277 Ga0466965_0013448
278 Ga0466961_0007550
279 Ga0453684_0000062
280 Ga0453684_0000071
281 Ga0453684_0000719
282 Ga0453684_0001034
283 Ga0453684_0001079
284 Ga0453684_0019247
285 Ga0453684_0050598
286 Ga0466971_0036548
287 Ga0466970_0020549
288 Ga0466970_0026809
289 Ga0466960_0012316
290 Ga0466959_0005219
291 Ga0451576_0038509
292 Ga0451576_0340561
293 Ga0466967_0001142
294 Ga0466967_0009414
295 Ga0495672_0055882
296 Ga0495684_0143479
297 Ga0496101_0031554
298 Ga0496107_0043655
299 Ga0496110_0276758
300 Ga0496111_0101821
301 Ga0496114_0010520
302 Ga0496114_0065687
303 Ga0496114_0184914
304 nmdc:mga00v17_14218_c1
305 nmdc:mga00v17_21774_c1
306 nmdc:mga06z11_48080_c1
307 nmdc:mga04h51_6191_c1
308 Ga0500559_0002293
309 2558913480
310 2795781520
311 2795795375
312 2809586316
313 2816505501
314 2863070383
315 2866555490
316 2866616981
317 2870783416
318 2891331434
319 2899364539
320 2915359602
321 2917737764
322 8047717701
323 8054475837
324 8056208456

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00478

IMPDH

IMP dehydrogenase / GMP reductase domain

61

532

0.98

PF00571

CBS

CBS domain

202

258

0.97

PF00571

CBS

CBS domain

142

198

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
7xlo-assembly2.cif.gz_B crystal structure of the catalytic domain of inosine monophosphate dehydrogenase (impdh) from methanocaldococcus jannaschii 0.9652 13 477
6kcf-assembly1.cif.gz_D-2 structure of inosine 5'-monophosphate dehydrogenase from candidatus liberibacter asiaticus str. psy62 0.965 15 480
6kcf-assembly1.cif.gz_B structure of inosine 5'-monophosphate dehydrogenase from candidatus liberibacter asiaticus str. psy62 0.9639 15 480
3ffs-assembly1.cif.gz_C the crystal structure of cryptosporidium parvum inosine-5'-monophosphate dehydrogenase 0.9636 11 477
3zfh-assembly1.cif.gz_A crystal structure of pseudomonas aeruginosa inosine 5'-monophosphate dehydrogenase 0.9634 11 478
ID Description Score Start End Superfamily
5mcpF01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9642 17 372 3.20.20.70
4qq3A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9459 9 478 3.20.20.70
4dqwB02 Alpha Beta;Roll;CBS-domain;CBS-domain 0.9444 102 211 3.10.580.10
5x8oA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9443 15 477 3.20.20.70
af_Q2G0Y7_1_488_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9411 11 500 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A3B9PJ58-F1-model_v4 IMP dehydrogenase 0.9839 159 256 GO:0003938
GO:0006183
AF-A0A7C3UW11-F1-model_v4 CBS domain-containing protein 0.9829 11 288 GO:0003938
GO:0006183
AF-K1T838-F1-model_v4 Inosine-5'-monophosphate dehydrogenase 0.9826 154 256 GO:0003938
GO:0006183
AF-A0A7J4TTD7-F1-model_v4 IMP dehydrogenase 0.9823 15 242 GO:0003938
GO:0006183
AF-A0A7Z1F113-F1-model_v4 deleted 0.9783 166 303

Map