F239595

General Info

Members Datasets Scaffolds Average Seq Length
162 115 324 336

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10007292|Ga0265327_100072921
Length 362
Sequence MLAARSSNPTSKVVEPAISNPPNDALGWKEILAGAEPFLLKVGERLRAQTAEFQADIENYAKYALSVQGKQLRPMLVCLSGEAAGGLNDSHVSVAAIIEMVHLATLVHDDIIDLAALRRGRPTLAAKWGNKISVLLGDCLFAKSLKLAASFPTPEICRAVASATDTVCEGEILQTQARGNFDLSQQHYFKVLTMKTAELFALSCDLGAFLADGQGKKTNGNGATHAKYREALRQYGLSLGTAYQLYDDCLDLFGSEKVAGKTVGADLTEGKMTLPLLIVRDKAPHADQAALRQCFSHWNPDRMPELLELLTKYRALALSRETIRGYLAAAREALNCLPSCEAKAGLLGLTRFLAEQTEVLGV

Samples

Sample ID Description Type Environment
1 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
63 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
64 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
67 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
68 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
69 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
72 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
73 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
74 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
75 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
76 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
77 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
78 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
79 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
80 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
81 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
86 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
87 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
88 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
89 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
90 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
91 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
92 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
93 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
96 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
97 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
98 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
99 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
109 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
110 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
113 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
114 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
115 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.38
Metatranscriptomes 0.62
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.62
Nodule 0
Rhizoplane 0.62
Rhizosphere 98.15
Stem 0
Stem Tuber 0
Unclassified 11.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265327_10007292 3300031251 Bacteria 8577
2 Ga0065712_10123370 3300005290 Unclassified 1639
3 Ga0070658_10000605 3300005327 Bacteria 31083
4 Ga0070683_100568929 3300005329 Bacteria 1084
5 Ga0070690_100062336 3300005330 Bacteria 2405
6 Ga0070690_100137733 3300005330 Bacteria 1654
7 Ga0070666_10050456 3300005335 Bacteria 2798
8 Ga0070689_100204829 3300005340 Bacteria 1612
9 Ga0070691_10170517 3300005341 Bacteria 1127
10 Ga0070675_100103310 3300005354 Bacteria 2403
11 Ga0070671_100024055 3300005355 Bacteria 4985
12 Ga0070674_100025645 3300005356 Bacteria 3840
13 Ga0070673_100099065 3300005364 Bacteria 2397
14 Ga0070688_100014993 3300005365 Bacteria 4400
15 Ga0070667_100213216 3300005367 Bacteria 1717
16 Ga0070714_100002509 3300005435 Bacteria 13531
17 Ga0070694_100103507 3300005444 Bacteria 2017
18 Ga0070708_100004170 3300005445 Bacteria 11354
19 Ga0070708_100115989 3300005445 Unclassified 2466
20 Ga0070706_100049092 3300005467 Bacteria 3895
21 Ga0070698_100273343 3300005471 Bacteria 1621
22 Ga0070697_100301971 3300005536 Unclassified 1376
23 Ga0070672_100116885 3300005543 Bacteria 2179
24 Ga0070686_100004032 3300005544 Bacteria 8073
25 Ga0070686_100092433 3300005544 Bacteria 2026
26 Ga0070665_100000422 3300005548 Bacteria 61821
27 Ga0068855_100456214 3300005563 Bacteria 1394
28 Ga0068857_100066061 3300005577 Bacteria 3218
29 Ga0068856_100257093 3300005614 Unclassified 1762
30 Ga0068859_100050000 3300005617 Bacteria 4199
31 Ga0068859_100051472 3300005617 Unclassified 4140
32 Ga0068859_100141539 3300005617 Bacteria 2479
33 Ga0068864_100068419 3300005618 Bacteria 3085
34 Ga0068863_100061201 3300005841 Bacteria 3559
35 Ga0068863_100092409 3300005841 Unclassified 2870
36 Ga0068863_100197711 3300005841 Bacteria 1933
37 Ga0068858_100407198 3300005842 Unclassified 1307
38 Ga0068860_100138839 3300005843 Bacteria 2335
39 Ga0075430_100061194 3300006846 Bacteria 3164
40 Ga0075430_100132166 3300006846 Unclassified 2080
41 Ga0075430_100257814 3300006846 Bacteria 1444
42 Ga0075431_100012298 3300006847 Bacteria 8638
43 Ga0075431_100334416 3300006847 Bacteria 1525
44 Ga0075429_100212973 3300006880 Bacteria 1692
45 Ga0097620_100049999 3300006931 Bacteria 4199
46 Ga0097620_100051472 3300006931 Unclassified 4140
47 Ga0097620_100141543 3300006931 Bacteria 2479
48 Ga0105240_10076602 3300009093 Eukaryota 4123
49 Ga0105240_10383152 3300009093 Bacteria 1587
50 Ga0111539_10017131 3300009094 Bacteria 8970
51 Ga0111539_10462437 3300009094 Bacteria 1477
52 Ga0105245_10334861 3300009098 Bacteria 1495
53 Ga0105237_10474787 3300009545 Bacteria 1257
54 Ga0157369_10019659 3300013105 Bacteria 7558
55 Ga0157369_10214557 3300013105 Bacteria 2016
56 Ga0157369_10532479 3300013105 Bacteria 1215
57 Ga0157374_10047851 3300013296 Bacteria 3966
58 Ga0157372_10336111 3300013307 Unclassified 1759
59 Ga0157372_10337554 3300013307 Bacteria 1755
60 Ga0157375_10000494 3300013308 Bacteria 35751
61 Ga0163163_10035249 3300014325 Bacteria 4853
62 Ga0224712_10016453 3300022467 Bacteria 2431
63 Ga0207680_10036584 3300025903 Bacteria 2828
64 Ga0207684_10184077 3300025910 Bacteria 1801
65 Ga0207695_10020796 3300025913 Bacteria 7506
66 Ga0207695_10069279 3300025913 Eukaryota 3610
67 Ga0207671_10294402 3300025914 Bacteria 1282
68 Ga0207660_10313341 3300025917 Bacteria 1252
69 Ga0207687_10347120 3300025927 Bacteria 1208
70 Ga0207664_10094432 3300025929 Bacteria 2458
71 Ga0207644_10049425 3300025931 Bacteria 3011
72 Ga0207670_10007092 3300025936 Bacteria 6242
73 Ga0207691_10040389 3300025940 Bacteria 4311
74 Ga0207667_10197487 3300025949 Bacteria 2064
75 Ga0207702_10122420 3300026078 Unclassified 2330
76 Ga0207641_10038304 3300026088 Bacteria 4008
77 Ga0207641_10040333 3300026088 Bacteria 3909
78 Ga0207641_10274378 3300026088 Bacteria 1583
79 Ga0207676_10264263 3300026095 Bacteria 1555
80 Ga0268266_10001565 3300028379 Bacteria 26750
81 Ga0268266_10053783 3300028379 Bacteria 3460
82 Ga0268264_10115931 3300028381 Bacteria 2354
83 Ga0265337_1000557 3300028556 Bacteria 19622
84 Ga0265334_10032187 3300028573 Bacteria 2093
85 Ga0265334_10041512 3300028573 Bacteria 1798
86 Ga0265323_10000632 3300028653 Bacteria 19237
87 Ga0265323_10044130 3300028653 Bacteria 1607
88 Ga0265338_10001246 3300028800 Bacteria 41955
89 Ga0265338_10003172 3300028800 Bacteria 23470
90 Ga0265338_10003174 3300028800 Bacteria 23452
91 Ga0265338_10011286 3300028800 Bacteria 10338
92 Ga0265338_10047525 3300028800 Bacteria 3918
93 Ga0265338_10050800 3300028800 Bacteria 3742
94 Ga0265338_10061670 3300028800 Bacteria 3285
95 Ga0265338_10095223 3300028800 Bacteria 2447
96 Ga0265320_10000501 3300031240 Bacteria 30510
97 Ga0265329_10005277 3300031242 Bacteria 5246
98 Ga0265340_10006468 3300031247 Bacteria 6448
99 Ga0265339_10029823 3300031249 Bacteria 3092
100 Ga0265314_10000389 3300031711 Bacteria 59681
101 Ga0265342_10164135 3300031712 Bacteria 1226
102 Ga0316578_10060190 3300031728 Bacteria 2235
103 Ga0307410_10011994 3300031852 Bacteria 4987
104 Ga0307416_100076859 3300032002 Bacteria 2801
105 Ga0307416_100211391 3300032002 Bacteria 1851
106 Ga0307411_10019556 3300032005 Bacteria 3915
107 Ga0373954_0172916 3300035118 Unclassified 1058
108 Ga0373927_0341336 3300035695 Bacteria 987
109 Ga0373947_0207822 3300035725 Bacteria 1283
110 Ga0373937_0009304 3300036401 Bacteria 8530
111 Ga0373937_0009571 3300036401 Bacteria 8434
112 Ga0316582_0070825 3300036647 Bacteria 2257
113 Ga0395899_0107318 3300037312 Bacteria 2010
114 Ga0395900_0296973 3300037418 Bacteria 1603
115 Ga0395905_0015487 3300037471 Bacteria 7249
116 Ga0395905_0339321 3300037471 Bacteria 1394
117 Ga0395901_0030890 3300038443 Bacteria 5521
118 Ga0395901_0136552 3300038443 Bacteria 2577
119 Ga0436363_1574020 3300039450 Bacteria 14574
120 Ga0451577_0000911 3300042876 Bacteria 43516
121 Ga0453684_0002874 3300044712 Bacteria 40400
122 Ga0453684_0044650 3300044712 Bacteria 5924
123 Ga0453684_0460730 3300044712 Unclassified 1414
124 Ga0451576_0000141 3300045051 Bacteria 183004
125 Ga0451576_0036017 3300045051 Bacteria 5249
126 Ga0451576_0093988 3300045051 Bacteria 3118
127 Ga0495592_0000088 3300046454 Bacteria 81548
128 Ga0495592_0018073 3300046454 Bacteria 5356
129 Ga0495651_0079406 3300046462 Bacteria 2480
130 Ga0495618_0103516 3300046514 Bacteria 1822
131 Ga0495628_0040090 3300046516 Bacteria 3744
132 Ga0495628_0124069 3300046516 Bacteria 1979
133 Ga0495586_0000233 3300046535 Bacteria 36840
134 Ga0495586_0142442 3300046535 Bacteria 1346
135 Ga0495645_0057416 3300046543 Bacteria 2825
136 Ga0495667_0283563 3300046559 Bacteria 1051
137 Ga0495657_0074382 3300046675 Unclassified 2211
138 Ga0495599_0024964 3300046678 Bacteria 3738
139 Ga0495599_0143190 3300046678 Bacteria 1482
140 Ga0495658_0216763 3300046683 Bacteria 1197
141 Ga0495613_0031866 3300046689 Bacteria 3915
142 Ga0495674_0046920 3300047319 Bacteria 3833
143 Ga0495674_0131757 3300047319 Bacteria 2106
144 Ga0495674_0236278 3300047319 Bacteria 1507
145 Ga0495684_0015508 3300047471 Bacteria 5865
146 Ga0496115_0010846 3300048918 Bacteria 6818
147 Ga0501033_0044292 3300049570 Unclassified 3313
148 Ga0501034_0000532 3300049571 Bacteria 60495
149 Ga0501034_0065219 3300049571 Bacteria 3654
150 Ga0501037_0087351 3300049573 Bacteria 2257
151 Ga0501047_0034634 3300049581 Bacteria 4876
152 Ga0501048_0131006 3300049582 Bacteria 1773
153 Ga0501070_0173073 3300049586 Bacteria 1778
154 Ga0501080_0096043 3300049742 Unclassified 2752
155 Ga0501083_0063816 3300049744 Unclassified 2456
156 Ga0501044_0000467 3300049823 Bacteria 49119
157 Ga0501044_0043919 3300049823 Bacteria 4641
158 nmdc:mga0qj67_116499_c1 3300050509 Unclassified 2159
159 nmdc:mga06r32_29867_c1 3300050510 Bacteria 5112
160 nmdc:mga06r32_397536_c1 3300050510 Bacteria 1360
161 nmdc:mga08y16_144116_c1 3300050511 Bacteria 2476
162 Ga0500636_0106010 3300053177 Bacteria 1593
163 Ga0265327_10007292
164 Ga0065712_10123370
165 Ga0070658_10000605
166 Ga0070683_100568929
167 Ga0070690_100062336
168 Ga0070690_100137733
169 Ga0070666_10050456
170 Ga0070689_100204829
171 Ga0070691_10170517
172 Ga0070675_100103310
173 Ga0070671_100024055
174 Ga0070674_100025645
175 Ga0070673_100099065
176 Ga0070688_100014993
177 Ga0070667_100213216
178 Ga0070714_100002509
179 Ga0070694_100103507
180 Ga0070708_100004170
181 Ga0070708_100115989
182 Ga0070706_100049092
183 Ga0070698_100273343
184 Ga0070697_100301971
185 Ga0070672_100116885
186 Ga0070686_100004032
187 Ga0070686_100092433
188 Ga0070665_100000422
189 Ga0068855_100456214
190 Ga0068857_100066061
191 Ga0068856_100257093
192 Ga0068859_100050000
193 Ga0068859_100051472
194 Ga0068859_100141539
195 Ga0068864_100068419
196 Ga0068863_100061201
197 Ga0068863_100092409
198 Ga0068863_100197711
199 Ga0068858_100407198
200 Ga0068860_100138839
201 Ga0075430_100061194
202 Ga0075430_100132166
203 Ga0075430_100257814
204 Ga0075431_100012298
205 Ga0075431_100334416
206 Ga0075429_100212973
207 Ga0097620_100049999
208 Ga0097620_100051472
209 Ga0097620_100141543
210 Ga0105240_10076602
211 Ga0105240_10383152
212 Ga0111539_10017131
213 Ga0111539_10462437
214 Ga0105245_10334861
215 Ga0105237_10474787
216 Ga0157369_10019659
217 Ga0157369_10214557
218 Ga0157369_10532479
219 Ga0157374_10047851
220 Ga0157372_10336111
221 Ga0157372_10337554
222 Ga0157375_10000494
223 Ga0163163_10035249
224 Ga0224712_10016453
225 Ga0207680_10036584
226 Ga0207684_10184077
227 Ga0207695_10020796
228 Ga0207695_10069279
229 Ga0207671_10294402
230 Ga0207660_10313341
231 Ga0207687_10347120
232 Ga0207664_10094432
233 Ga0207644_10049425
234 Ga0207670_10007092
235 Ga0207691_10040389
236 Ga0207667_10197487
237 Ga0207702_10122420
238 Ga0207641_10038304
239 Ga0207641_10040333
240 Ga0207641_10274378
241 Ga0207676_10264263
242 Ga0268266_10001565
243 Ga0268266_10053783
244 Ga0268264_10115931
245 Ga0265337_1000557
246 Ga0265334_10032187
247 Ga0265334_10041512
248 Ga0265323_10000632
249 Ga0265323_10044130
250 Ga0265338_10001246
251 Ga0265338_10003172
252 Ga0265338_10003174
253 Ga0265338_10011286
254 Ga0265338_10047525
255 Ga0265338_10050800
256 Ga0265338_10061670
257 Ga0265338_10095223
258 Ga0265320_10000501
259 Ga0265329_10005277
260 Ga0265340_10006468
261 Ga0265339_10029823
262 Ga0265314_10000389
263 Ga0265342_10164135
264 Ga0316578_10060190
265 Ga0307410_10011994
266 Ga0307416_100076859
267 Ga0307416_100211391
268 Ga0307411_10019556
269 Ga0373954_0172916
270 Ga0373927_0341336
271 Ga0373947_0207822
272 Ga0373937_0009304
273 Ga0373937_0009571
274 Ga0316582_0070825
275 Ga0395899_0107318
276 Ga0395900_0296973
277 Ga0395905_0015487
278 Ga0395905_0339321
279 Ga0395901_0030890
280 Ga0395901_0136552
281 Ga0436363_1574020
282 Ga0451577_0000911
283 Ga0453684_0002874
284 Ga0453684_0044650
285 Ga0453684_0460730
286 Ga0451576_0000141
287 Ga0451576_0036017
288 Ga0451576_0093988
289 Ga0495592_0000088
290 Ga0495592_0018073
291 Ga0495651_0079406
292 Ga0495618_0103516
293 Ga0495628_0040090
294 Ga0495628_0124069
295 Ga0495586_0000233
296 Ga0495586_0142442
297 Ga0495645_0057416
298 Ga0495667_0283563
299 Ga0495657_0074382
300 Ga0495599_0024964
301 Ga0495599_0143190
302 Ga0495658_0216763
303 Ga0495613_0031866
304 Ga0495674_0046920
305 Ga0495674_0131757
306 Ga0495674_0236278
307 Ga0495684_0015508
308 Ga0496115_0010846
309 Ga0501033_0044292
310 Ga0501034_0000532
311 Ga0501034_0065219
312 Ga0501037_0087351
313 Ga0501047_0034634
314 Ga0501048_0131006
315 Ga0501070_0173073
316 Ga0501080_0096043
317 Ga0501083_0063816
318 Ga0501044_0000467
319 Ga0501044_0043919
320 nmdc:mga0qj67_116499_c1
321 nmdc:mga06r32_29867_c1
322 nmdc:mga06r32_397536_c1
323 nmdc:mga08y16_144116_c1
324 Ga0500636_0106010

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

54

310

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jyx-assembly1.cif.gz_G-2 crystal structure of polyprenyl synthase patl_3739 (target efi-509195) from pseudoalteromonas atlantica, complex with inorganic phosphate and an unknown ligand 0.9509 26 342
4jyx-assembly2.cif.gz_B crystal structure of polyprenyl synthase patl_3739 (target efi-509195) from pseudoalteromonas atlantica, complex with inorganic phosphate and an unknown ligand 0.9404 26 343
3oyr-assembly1.cif.gz_B crystal structure of polyprenyl synthase from caulobacter crescentus cb15 complexed with calcium and isoprenyl diphosphate 0.9342 19 340
3wjn-assembly1.cif.gz_A crystal structure of octaprenyl pyrophosphate synthase from escherichia coli with farnesyl s-thiol-pyrophosphate (fspp) 0.9318 26 339
4jyx-assembly1.cif.gz_G-2 crystal structure of polyprenyl synthase patl_3739 (target efi-509195) from pseudoalteromonas atlantica, complex with inorganic phosphate and an unknown ligand 0.9306 26 342
ID Description Score Start End Superfamily
af_P0AD57_1_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9539 26 342 1.10.600.10
3oyrB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9342 19 340 1.10.600.10
af_P0AD57_1_323_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.934 26 342 1.10.600.10
af_Q76FS5_94_416_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9309 24 342 1.10.600.10
3aqbB00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9234 28 343 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A1G2YX49-F1-model_v4 Polyprenyl synthetase 0.9725 84 343 GO:0004659
GO:0008299
AF-A0A2E7BMV2-F1-model_v4 Polyprenyl synthetase family protein 0.9689 24 340 GO:0004659
GO:0008299
AF-A0A7C5M508-F1-model_v4 Polyprenyl synthetase family protein 0.9683 27 263 GO:0004659
GO:0008299
AF-A0A2M7P4V0-F1-model_v4 Polyprenyl synthetase 0.9674 24 342 GO:0004659
GO:0008299
AF-A0A1F9HVN3-F1-model_v4 Octaprenyl diphosphate synthase 0.9671 91 342 GO:0004659
GO:0008299

Map