F238083

General Info

Members Datasets Scaffolds Average Seq Length
161 130 322 903

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2671180531|2673166648
Length 977
Sequence GFSRSRKRDPRSDSRAARGAPRVPGSAPNVPPVLITPSQLQQYLNQRESFLLAGALMPNSFGSLSTLSVGGKPYTIHRLAAVEAVHPQAKKLPFSLKILLENLLRNEGVSLAVRKADIDALALWQPKAEPNVEIAFTPARVLMQDFTGVPCVVDLAAMRDAMKTLGGDPSKINPLVPVELVIDHSVQVDEYGTDRAFVDNVNLEYERNQERYVFLRWGQNAFRNFQVVPPGTGICHQVNLEHLARSVFVDPHGAAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVSMLIPQVIGFKLSGRLSPGATATDLVLTVTQMLRKKGVVGKFVEFFGPGLADLPLADRATIANMAPEYGATCGIFPVDAETLRYMTLTGRPAELVALVEAYYKEQGLFHDANTPEASYTDTLELDLSTVESSLAGPTRPQDRIALKNMKTAFAEALPKLKAGVKKPTAVPLPVAAPSSASGPFGVKEAAPAPEVPAGSLHDGSVVIAAITSCTNTSNPSVMMAAGVLAKKAVARGLSTRPWVKTSLAPGSQVVTDYLTNAGVLGDLDKLRFNVVGYGCTTCIGNSGPLPEAVSREIAAEGLVVSAVLSGNRNFEGRVHPEVRANYLASPPLVVAYALAGRADIDWDTEPVGADPSGNPVFLKDIWPTHEEVSAAIGSSIKKESFERIYGAVYEGDSRWKELRVPTGDLYEWSASSTYIANPPYFRGMGVMPPAIAEITGARVLALLGDSITTDHISPAGNIKKDSPAGKYLLSHGVEQKDFNQYGARRGHHEVMMRGTFANVRLRNLLVPAREDGSRVEGGFTRHLPGTEVVSLYDAAMAYQKDGVPLIVIGGKEYGSGSSRDWAAKGTNLLGVKAVIAESYERIHRSNLVGMGVVPLQFKAGESAASLGLTGEEVFNIDGLIAGLDKNFDGPTRELTVTATRPDGTTVAFKAVCRIDTPQEVQYYKNGGILPYVLRQLLQAK

Samples

Sample ID Description Type Environment
1 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
2 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
3 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
4 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
5 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
6 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
7 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
8 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
9 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
10 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
11 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
12 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
13 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
14 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
15 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
16 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
17 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
18 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
19 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
20 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
21 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
22 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
23 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
24 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
25 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
26 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
27 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
28 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
29 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
30 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
31 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
32 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
33 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
34 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
35 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
36 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
37 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
38 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
39 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
40 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
41 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
42 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
43 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
44 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
45 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
46 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
47 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
48 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
49 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
50 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
51 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
52 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
53 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
54 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
55 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
56 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
57 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
58 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
59 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
60 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
61 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
62 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
63 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
64 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
65 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
66 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
67 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
68 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
70 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
71 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
72 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
73 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
74 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
75 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
76 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
77 2671180694 Paenibacillus sp. A3 Isolate Unclassified
78 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
79 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
80 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
81 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
82 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
83 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
84 2818991459 Paenibacillus sp. 597 Isolate Unclassified
85 2831905167 Ammoniphilus oxalaticus RAOx-1 Isolate Rhizosphere
86 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
87 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
88 2857472729 Cohnella sp. R-74144 Isolate Unclassified
89 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
90 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
91 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
92 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
93 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
94 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
95 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
96 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
97 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
98 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
99 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
100 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
101 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
102 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
103 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
104 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
105 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
106 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
107 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
108 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
109 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
110 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
111 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
112 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
113 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
114 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
115 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
116 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
117 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
118 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
119 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
120 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
121 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
122 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
123 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
124 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
125 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
126 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified
127 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
128 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
129 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
130 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 59.01
Metatranscriptomes 2.48
Isolates 38.51

Biome Distribution

Category Percentage (%)
Aerial Root 1.24
Bulb 0
Endosphere 3.11
Nodule 0.62
Rhizoplane 0
Rhizosphere 72.05
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055541_1000599 3300003841 Bacteria 9658
2 Ga0070699_100006675 3300005518 Bacteria 10036
3 Ga0070679_100008319 3300005530 Bacteria 9758
4 Ga0070696_100000236 3300005546 Bacteria 33427
5 Ga0068859_100048780 3300005617 Bacteria 4254
6 Ga0075434_100008505 3300006871 Bacteria 9545
7 Ga0097620_100048780 3300006931 Bacteria 4254
8 Ga0209566_100033 3300025225 Bacteria 332650
9 Ga0209566_100080 3300025225 Bacteria 156454
10 Ga0209566_100173 3300025225 Bacteria 70595
11 Ga0209258_101787 3300025242 Bacteria 6596
12 Ga0265338_10027834 3300028800 Bacteria 5658
13 Ga0265324_10000082 3300029957 Bacteria 75154
14 Ga0265760_10000646 3300031090 Bacteria 9872
15 Ga0265330_10004793 3300031235 Bacteria 6827
16 Ga0265330_10006836 3300031235 Bacteria 5615
17 Ga0265325_10005588 3300031241 Bacteria 7753
18 Ga0265329_10000127 3300031242 Bacteria 36476
19 Ga0265329_10007961 3300031242 Bacteria 4057
20 Ga0265340_10001757 3300031247 Bacteria 12413
21 Ga0265339_10000006 3300031249 Bacteria 259593
22 Ga0265339_10003081 3300031249 Bacteria 11731
23 Ga0265339_10007568 3300031249 Bacteria 7000
24 Ga0265331_10002877 3300031250 Bacteria 11380
25 Ga0265327_10005617 3300031251 Bacteria 10387
26 Ga0265316_10000043 3300031344 Bacteria 133134
27 Ga0265316_10000071 3300031344 Bacteria 103746
28 Ga0265314_10000009 3300031711 Bacteria 476805
29 Ga0265314_10001551 3300031711 Bacteria 25324
30 Ga0265314_10002542 3300031711 Bacteria 18554
31 Ga0265342_10003538 3300031712 Bacteria 12781
32 Ga0265342_10021717 3300031712 Bacteria 4093
33 Ga0316576_10021959 3300031727 Bacteria 4424
34 Ga0373950_0000001 3300034818 Bacteria 1001987
35 Ga0373950_0000064 3300034818 Bacteria 58213
36 Ga0373934_0008024 3300035086 Bacteria 3929
37 Ga0373961_0000088 3300035241 Bacteria 49704
38 Ga0373933_0000238 3300035724 Bacteria 36234
39 Ga0373937_0002029 3300036401 Bacteria 16914
40 Ga0395899_0047032 3300037312 Bacteria 3212
41 Ga0395905_0001067 3300037471 Bacteria 34539
42 Ga0395905_0001916 3300037471 Bacteria 23890
43 Ga0400484_08653 3300038725 Bacteria 3304
44 Ga0400489_02702 3300039093 Bacteria 10442
45 Ga0439436_0003391 3300041404 Bacteria 4833
46 Ga0439439_0000817 3300041406 Bacteria 5671
47 Ga0439462_0000547 3300042015 Bacteria 7442
48 Ga0451577_0006427 3300042876 Bacteria 11722
49 Ga0451577_0027762 3300042876 Bacteria 5122
50 Ga0466969_0003509 3300044656 Bacteria 8328
51 Ga0466961_0017723 3300044693 Bacteria 4576
52 Ga0453684_0000078 3300044712 Bacteria 428794
53 Ga0453684_0001192 3300044712 Bacteria 80361
54 Ga0453684_0030397 3300044712 Bacteria 7632
55 Ga0453684_0042700 3300044712 Bacteria 6109
56 Ga0453684_0134664 3300044712 Bacteria 2960
57 Ga0496116_0010960 3300048919 Bacteria 7552
58 Ga0496116_0018328 3300048919 Bacteria 5400
59 Ga0496119_0018911 3300048922 Bacteria 5102
60 Ga0496122_0004166 3300048925 Bacteria 18226
61 Ga0496123_0042192 3300048926 Bacteria 3153
62 Ga0496124_0001350 3300048927 Bacteria 36777
63 Ga0496124_0045299 3300048927 Bacteria 3772
64 Ga0501306_000610 3300049127 Bacteria 2840
65 Ga0501312_000736 3300049528 Bacteria 2831
66 Ga0501034_0000630 3300049571 Bacteria 54662
67 Ga0501037_0032759 3300049573 Bacteria 3839
68 Ga0501043_0025023 3300049579 Bacteria 4683
69 Ga0501046_0000688 3300049580 Bacteria 32807
70 Ga0501047_0000011 3300049581 Bacteria 409778
71 Ga0501048_0001017 3300049582 Bacteria 20948
72 Ga0501067_0000077 3300049583 Bacteria 56354
73 Ga0501068_0000287 3300049584 Bacteria 25110
74 Ga0501068_0006243 3300049584 Bacteria 6555
75 Ga0501070_0000078 3300049586 Bacteria 82971
76 Ga0501070_0002229 3300049586 Bacteria 17028
77 Ga0501072_0000030 3300049588 Bacteria 133181
78 Ga0501072_0000040 3300049588 Bacteria 108581
79 Ga0501073_0000280 3300049589 Bacteria 33667
80 Ga0501073_0001374 3300049589 Bacteria 17986
81 Ga0501073_0003823 3300049589 Bacteria 11296
82 Ga0501074_0001252 3300049590 Bacteria 16768
83 Ga0501075_0049521 3300049591 Bacteria 3158
84 Ga0501076_0004776 3300049592 Bacteria 9671
85 Ga0501077_0006435 3300049593 Bacteria 7208
86 Ga0501079_0000755 3300049741 Bacteria 22015
87 Ga0501079_0021675 3300049741 Bacteria 4916
88 Ga0501080_0002368 3300049742 Bacteria 16445
89 Ga0501080_0005757 3300049742 Bacteria 11085
90 Ga0501083_0013322 3300049744 Bacteria 5750
91 Ga0501083_0013839 3300049744 Bacteria 5641
92 Ga0501044_0000209 3300049823 Bacteria 74537
93 Ga0501044_0007984 3300049823 Bacteria 11627
94 nmdc:mga0n895_27265_c1 3300050512 Bacteria 5425
95 Ga0501084_0000037 3300054114 Bacteria 108616
96 Ga0501084_0000413 3300054114 Bacteria 33035
97 Ga0501084_0072356 3300054114 Bacteria 2887
98 Ga0587070_000901 3300059491 Bacteria 2813
99 Ga0501082_0000078 3300060353 Bacteria 72132
100 2673166648 2671180531 Bacteria 9045424
101 2524190454 2524023129 Bacteria 6762600
102 2563929573 2563366752 Bacteria 4961801
103 2571527956 2571042143 Bacteria 6986194
104 2587743419 2585428059 Bacteria 8696589
105 2595321052 2593339198 Bacteria 7267884
106 2644423568 2643221676 Bacteria 8119172
107 2673819178 2671180694 Bacteria 7506943
108 2723602141 2721755693 Bacteria 6126117
109 2728531096 2728368933 Bacteria 7044283
110 2730138204 2728369359 Bacteria 5621728
111 2753812318 2751185905 Bacteria 6142767
112 2793183917 2791355222 Bacteria 5898266
113 2802439946 2802428803 Bacteria 5806948
114 2819675875 2818991459 Bacteria 8736032
115 2831908514 2831905167 Bacteria 3319172
116 2842775692 2842775625 Bacteria 5587290
117 2857459040 2857453340 Bacteria 8090534
118 2857477772 2857472729 Bacteria 6568124
119 2865002237 2864997549 Bacteria 5139696
120 2865007695 2865002811 Bacteria 6333767
121 2883578889 2883577096 Bacteria 4709178
122 2888579666 2888578766 Bacteria 6743310
123 2889051716 2889049205 Bacteria 7524325
124 2889278214 2889276214 Bacteria 5979355
125 2889299664 2889295896 Bacteria 4704906
126 2894773758 2894772417 Bacteria 5305674
127 2904113742 2904113452 Bacteria 7796941
128 2904598146 2904595352 Bacteria 6124848
129 2904761481 2904755435 Bacteria 7986759
130 2907206176 2907202186 Bacteria 6632024
131 2919428304 2919425241 Bacteria 8055701
132 2919432207 2919425241 Bacteria 8055701
133 2925327375 2925326138 Bacteria 9652120
134 2929205663 2929199973 Bacteria 7260745
135 2938651153 2938649242 Bacteria 7118381
136 2939707365 2939702853 Bacteria 5139229
137 2968563085 2968558590 Bacteria 6956864
138 2971405462 2971403814 Bacteria 7370929
139 2971417806 2971410472 Bacteria 8311090
140 2980130949 2980125574 Bacteria 5567337
141 2980182737 2980182181 Bacteria 9454109
142 2981288772 2981284811 Bacteria 4641497
143 2981293591 2981289755 Bacteria 4641509
144 2981984173 2981980479 Bacteria 4641628
145 2981989308 2981985349 Bacteria 4641497
146 2984532585 2984527788 Bacteria 5288478
147 2984533842 2984532647 Bacteria 5288506
148 2988225693 2988225383 Bacteria 7221625
149 2996637336 2996632988 Bacteria 6921523
150 2996711132 2996706504 Bacteria 5757485
151 648168644 648028048 Bacteria 5394884
152 8002318231 8002317523 Bacteria 8051857
153 8046993646 8046991243 Bacteria 8497463
154 8054465943 8054465665 Bacteria 7323556
155 8054796352 8054795415 Bacteria 9785225
156 8055636453 8055632911 Bacteria 5283357
157 8055916031 8055909800 Bacteria 7278581
158 8056535405 8056533031 Bacteria 8964429
159 8057478057 8057473075 Bacteria 5892720
160 8057736341 8057733483 Bacteria 6578323
161 8057981296 8057977335 Bacteria 5694872
162 Ga0055541_1000599
163 Ga0070699_100006675
164 Ga0070679_100008319
165 Ga0070696_100000236
166 Ga0068859_100048780
167 Ga0075434_100008505
168 Ga0097620_100048780
169 Ga0209566_100033
170 Ga0209566_100080
171 Ga0209566_100173
172 Ga0209258_101787
173 Ga0265338_10027834
174 Ga0265324_10000082
175 Ga0265760_10000646
176 Ga0265330_10004793
177 Ga0265330_10006836
178 Ga0265325_10005588
179 Ga0265329_10000127
180 Ga0265329_10007961
181 Ga0265340_10001757
182 Ga0265339_10000006
183 Ga0265339_10003081
184 Ga0265339_10007568
185 Ga0265331_10002877
186 Ga0265327_10005617
187 Ga0265316_10000043
188 Ga0265316_10000071
189 Ga0265314_10000009
190 Ga0265314_10001551
191 Ga0265314_10002542
192 Ga0265342_10003538
193 Ga0265342_10021717
194 Ga0316576_10021959
195 Ga0373950_0000001
196 Ga0373950_0000064
197 Ga0373934_0008024
198 Ga0373961_0000088
199 Ga0373933_0000238
200 Ga0373937_0002029
201 Ga0395899_0047032
202 Ga0395905_0001067
203 Ga0395905_0001916
204 Ga0400484_08653
205 Ga0400489_02702
206 Ga0439436_0003391
207 Ga0439439_0000817
208 Ga0439462_0000547
209 Ga0451577_0006427
210 Ga0451577_0027762
211 Ga0466969_0003509
212 Ga0466961_0017723
213 Ga0453684_0000078
214 Ga0453684_0001192
215 Ga0453684_0030397
216 Ga0453684_0042700
217 Ga0453684_0134664
218 Ga0496116_0010960
219 Ga0496116_0018328
220 Ga0496119_0018911
221 Ga0496122_0004166
222 Ga0496123_0042192
223 Ga0496124_0001350
224 Ga0496124_0045299
225 Ga0501306_000610
226 Ga0501312_000736
227 Ga0501034_0000630
228 Ga0501037_0032759
229 Ga0501043_0025023
230 Ga0501046_0000688
231 Ga0501047_0000011
232 Ga0501048_0001017
233 Ga0501067_0000077
234 Ga0501068_0000287
235 Ga0501068_0006243
236 Ga0501070_0000078
237 Ga0501070_0002229
238 Ga0501072_0000030
239 Ga0501072_0000040
240 Ga0501073_0000280
241 Ga0501073_0001374
242 Ga0501073_0003823
243 Ga0501074_0001252
244 Ga0501075_0049521
245 Ga0501076_0004776
246 Ga0501077_0006435
247 Ga0501079_0000755
248 Ga0501079_0021675
249 Ga0501080_0002368
250 Ga0501080_0005757
251 Ga0501083_0013322
252 Ga0501083_0013839
253 Ga0501044_0000209
254 Ga0501044_0007984
255 nmdc:mga0n895_27265_c1
256 Ga0501084_0000037
257 Ga0501084_0000413
258 Ga0501084_0072356
259 Ga0587070_000901
260 Ga0501082_0000078
261 2673166648
262 2524190454
263 2563929573
264 2571527956
265 2587743419
266 2595321052
267 2644423568
268 2673819178
269 2723602141
270 2728531096
271 2730138204
272 2753812318
273 2793183917
274 2802439946
275 2819675875
276 2831908514
277 2842775692
278 2857459040
279 2857477772
280 2865002237
281 2865007695
282 2883578889
283 2888579666
284 2889051716
285 2889278214
286 2889299664
287 2894773758
288 2904113742
289 2904598146
290 2904761481
291 2907206176
292 2919428304
293 2919432207
294 2925327375
295 2929205663
296 2938651153
297 2939707365
298 2968563085
299 2971405462
300 2971417806
301 2980130949
302 2980182737
303 2981288772
304 2981293591
305 2981984173
306 2981989308
307 2984532585
308 2984533842
309 2988225693
310 2996637336
311 2996711132
312 648168644
313 8002318231
314 8046993646
315 8054465943
316 8054796352
317 8055636453
318 8055916031
319 8056535405
320 8057478057
321 8057736341
322 8057981296

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00330

Aconitase

Aconitase family (aconitate hydratase)

117

633

0.93

PF00694

Aconitase_C

Aconitase C-terminal domain

761

897

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2b3y-assembly2.cif.gz_B structure of a monoclinic crystal form of human cytosolic aconitase (irp1) 0.9659 4 896
2b3y-assembly2.cif.gz_B structure of a monoclinic crystal form of human cytosolic aconitase (irp1) 0.9638 4 896
1nit-assembly1.cif.gz_A crystal structure of aconitase with trans-aconitate and nitrocitrate bound 0.8937 74 895
1c96-assembly1.cif.gz_A s642a:citrate complex of aconitase 0.8745 60 891
1b0m-assembly1.cif.gz_A aconitase r644q:fluorocitrate complex 0.8602 42 895
ID Description Score Start End Superfamily
2b3yB02 Alpha Beta;3-Layer(aba) Sandwich;Aconitase; Domain 2;Aconitase, Domain 2 0.9771 248 370 3.40.1060.10
af_Q2FYS9_374_598_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9673 372 595 3.30.499.10
af_Q811J3_205_443_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9646 143 370 3.30.499.10
af_Q2FYS9_374_598_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9589 372 595 3.30.499.10
af_A0A1D6KP74_88_339_3.30.499.10 Alpha Beta;2-Layer Sandwich;Aconitase; domain 3;Aconitase, domain 3 0.9589 373 620 3.30.499.10
ID Description Score Start End GO Terms
AF-A0A2S6DJE7-F1-model_v4 deleted 0.9928 43 369
AF-X1VPF8-F1-model_v4 Aconitase/3-isopropylmalate dehydratase large subunit alpha/beta/alpha domain-containing protein 0.9892 173 370 GO:0046872
GO:0051536
AF-A0A833G866-F1-model_v4 Aconitate hydratase (EC 4.2.1.3) 0.9884 4 393 GO:0016829
GO:0046872
GO:0051536
AF-A0A0E3D7Z0-F1-model_v4 Putative aconitate hydratase 0.9881 226 380 GO:0046872
GO:0051536
AF-T1AJ46-F1-model_v4 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain protein (EC 4.2.1.-) 0.9859 84 383 GO:0016829
GO:0046872
GO:0051536

Map