F237423

General Info

Members Datasets Scaffolds Average Seq Length
161 97 161 614

Family's Representative Sequence

Representative Sequence 3300036401|Ga0373937_0102827|Ga0373937_0102827_571_2469
Length 632
Sequence MREEFEKMAAAGKIEGRHIDALVQLTTSGFCMHRSWGFGRIKTVDTVFARFTIDFQNKPGHTMDLAFAAESLKPISKDHILARKAADLEGLRQMAATSHLELVRLVLNSNNGKATVDQIQQLLVPDVIRDDWKKWWEAAKRELKKDGHFQVPLKKTEPVVYQVKEVSLQDRLMGEFRAAKGLKARIAVAGELFKNAHDLADKQAAATEIITALDAELTSYQRTQPAVALEAIFVRDDIRQMAGLPPLEGEVSAGAIWTQDAKLGPLMEQLPSVKHRRALESFKAANPDRWLDTLRITLNMVSAKLCREFAGLLVQEGKIAELKETLARLISQHLASSELLLWLAKERTDAFADILGPEVFRAMLTSMERDQFNEKRSNRLREFILDDQELVAELTASAELEVIKDLTRALQLSPVFDDMDKRSLLARIVKSHPAVQSLISGEQTKQDATLLVSWSSLERRKIEYADLVHKKIPANSKEVAVARSYGDLRENHEYKAAKEMQKILMRRKDELETQLVRARGTDFSNARTDVVSIGTVVRTTDIATSQSESFTVLGAWDSDPDKGIVSYLSPVAQSLLNRKVGDEVEFEIHGARHQHRIESIEAYKNAGGETVPPVAASQEAGEATEAGNRAQA

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
4 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
5 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
6 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
7 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
8 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
11 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
19 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
20 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
21 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
22 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
23 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
37 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
38 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
39 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
40 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
41 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
42 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
43 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
44 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
45 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
46 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
47 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
48 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
49 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
50 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
51 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
52 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
53 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
54 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
55 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
56 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
57 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
58 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
59 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
60 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
61 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
62 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
63 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
67 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
68 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
69 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
70 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
71 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
72 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
73 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
74 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
75 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
76 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
77 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
78 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
79 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
80 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
81 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
82 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
83 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
84 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
85 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
88 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
89 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.62
Rhizosphere 98.76
Stem 0
Stem Tuber 0
Unclassified 0.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10012525 3300003320 Bacteria 7051
2 Ga0070690_100009800 3300005330 Bacteria 5559
3 Ga0070688_100061899 3300005365 Bacteria 2368
4 Ga0070681_10024552 3300005458 Bacteria 6064
5 Ga0070681_10028414 3300005458 Bacteria 5622
6 Ga0068853_100000001 3300005539 Bacteria 715840
7 Ga0070686_100001346 3300005544 Bacteria 13904
8 Ga0070686_100021260 3300005544 Bacteria 3854
9 Ga0070704_100007106 3300005549 Bacteria 6648
10 Ga0068857_100020289 3300005577 Bacteria 5844
11 Ga0068856_100000311 3300005614 Bacteria 53369
12 Ga0068856_100019888 3300005614 Bacteria 6517
13 Ga0068859_100005610 3300005617 Bacteria 12789
14 Ga0068859_100083792 3300005617 Bacteria 3232
15 Ga0068864_100023796 3300005618 Bacteria 5146
16 Ga0068863_100063244 3300005841 Bacteria 3500
17 Ga0081455_10080850 3300005937 Unclassified 2663
18 Ga0075428_100041150 3300006844 Bacteria 5083
19 Ga0097620_100005610 3300006931 Bacteria 12789
20 Ga0097620_100083795 3300006931 Bacteria 3232
21 Ga0105240_10022814 3300009093 Bacteria 8292
22 Ga0105240_10051121 3300009093 Bacteria 5204
23 Ga0105240_10052982 3300009093 Bacteria 5097
24 Ga0111539_10119331 3300009094 Unclassified 3091
25 Ga0111539_10283677 3300009094 Unclassified 1927
26 Ga0105242_10040547 3300009176 Unclassified 3752
27 Ga0105248_10062926 3300009177 Unclassified 4164
28 Ga0105238_10011785 3300009551 Bacteria 8812
29 Ga0105238_10023342 3300009551 Bacteria 6306
30 Ga0105238_10046029 3300009551 Bacteria 4406
31 Ga0157370_10033585 3300013104 Bacteria 5002
32 Ga0157378_10051490 3300013297 Bacteria 3664
33 Ga0157375_10000179 3300013308 Bacteria 59348
34 Ga0163163_10001396 3300014325 Bacteria 20392
35 Ga0163163_10062175 3300014325 Bacteria 3699
36 Ga0207707_10023485 3300025912 Bacteria 5394
37 Ga0207695_10005629 3300025913 Bacteria 16541
38 Ga0207695_10049971 3300025913 Unclassified 4402
39 Ga0207695_10146157 3300025913 Bacteria 2308
40 Ga0207652_10064207 3300025921 Bacteria 3177
41 Ga0207694_10079849 3300025924 Bacteria 2567
42 Ga0207670_10095041 3300025936 Bacteria 2116
43 Ga0207711_10062144 3300025941 Unclassified 3221
44 Ga0207661_10017131 3300025944 Bacteria 5355
45 Ga0207667_10037712 3300025949 Bacteria 5165
46 Ga0207667_10105665 3300025949 Unclassified 2905
47 Ga0207639_10000001 3300026041 Bacteria 1431562
48 Ga0207702_10032019 3300026078 Bacteria 4386
49 Ga0207674_10016020 3300026116 Bacteria 8213
50 Ga0207674_10140948 3300026116 Bacteria 2370
51 Ga0207428_10083701 3300027907 Unclassified 2487
52 Ga0265337_1000020 3300028556 Bacteria 74117
53 Ga0265337_1000143 3300028556 Bacteria 35749
54 Ga0265337_1005045 3300028556 Bacteria 5337
55 Ga0265337_1005360 3300028556 Bacteria 5103
56 Ga0265326_10008369 3300028558 Bacteria 3121
57 Ga0265319_1000004 3300028563 Bacteria 305085
58 Ga0265334_10007295 3300028573 Bacteria 4743
59 Ga0265336_10001509 3300028666 Bacteria 10514
60 Ga0265338_10000048 3300028800 Bacteria 218859
61 Ga0265338_10000103 3300028800 Bacteria 157336
62 Ga0265338_10000208 3300028800 Bacteria 109817
63 Ga0265338_10000670 3300028800 Bacteria 59227
64 Ga0265338_10001089 3300028800 Bacteria 45131
65 Ga0265338_10002163 3300028800 Bacteria 30175
66 Ga0265338_10003514 3300028800 Bacteria 21956
67 Ga0265338_10003559 3300028800 Bacteria 21779
68 Ga0265338_10003771 3300028800 Bacteria 21064
69 Ga0265338_10004881 3300028800 Bacteria 17863
70 Ga0265338_10005026 3300028800 Bacteria 17467
71 Ga0265338_10005174 3300028800 Bacteria 17131
72 Ga0265338_10010381 3300028800 Bacteria 10928
73 Ga0265338_10011074 3300028800 Bacteria 10461
74 Ga0265338_10013327 3300028800 Bacteria 9289
75 Ga0265338_10022843 3300028800 Bacteria 6455
76 Ga0265324_10000831 3300029957 Bacteria 20036
77 Ga0265324_10002166 3300029957 Bacteria 10299
78 Ga0265324_10006944 3300029957 Bacteria 4657
79 Ga0265320_10000755 3300031240 Bacteria 24856
80 Ga0265320_10002717 3300031240 Bacteria 12231
81 Ga0265320_10010427 3300031240 Bacteria 5538
82 Ga0265320_10013252 3300031240 Bacteria 4749
83 Ga0265340_10003639 3300031247 Bacteria 8663
84 Ga0265340_10009266 3300031247 Bacteria 5288
85 Ga0265339_10002567 3300031249 Bacteria 12949
86 Ga0265327_10003221 3300031251 Bacteria 15880
87 Ga0265327_10003420 3300031251 Bacteria 15188
88 Ga0265327_10006359 3300031251 Bacteria 9470
89 Ga0265316_10020895 3300031344 Bacteria 5560
90 Ga0265316_10029943 3300031344 Bacteria 4469
91 Ga0265313_10001769 3300031595 Bacteria 19806
92 Ga0373928_0000049 3300035084 Bacteria 20746
93 Ga0373929_0000669 3300035085 Bacteria 6608
94 Ga0373934_0035455 3300035086 Unclassified 1963
95 Ga0373944_0004904 3300035089 Bacteria 3506
96 Ga0373949_0004016 3300035090 Unclassified 3411
97 Ga0373932_0000001 3300035112 Bacteria 1459067
98 Ga0373946_0044778 3300035171 Unclassified 1828
99 Ga0373962_0000005 3300035242 Bacteria 63923
100 Ga0373931_0000008 3300035691 Bacteria 362269
101 Ga0373935_0003886 3300035692 Bacteria 8715
102 Ga0373935_0005415 3300035692 Bacteria 7520
103 Ga0373927_0002705 3300035695 Bacteria 12920
104 Ga0373947_0047644 3300035725 Unclassified 2569
105 Ga0373937_0102827 3300036401 Bacteria 2653
106 Ga0316582_0075903 3300036647 Bacteria 2185
107 Ga0373925_0000192 3300037068 Bacteria 66343
108 Ga0373925_0001101 3300037068 Bacteria 24164
109 Ga0373925_0012239 3300037068 Bacteria 6208
110 Ga0373925_0046147 3300037068 Bacteria 3239
111 Ga0395905_0051837 3300037471 Unclassified 3843
112 Ga0451577_0006001 3300042876 Bacteria 12231
113 Ga0451577_0092674 3300042876 Unclassified 2697
114 Ga0453684_0005466 3300044712 Bacteria 25155
115 Ga0453684_0012810 3300044712 Bacteria 13750
116 Ga0451576_0030102 3300045051 Bacteria 5805
117 Ga0451576_0096162 3300045051 Unclassified 3081
118 Ga0451576_0119804 3300045051 Bacteria 2740
119 Ga0495592_0000034 3300046454 Bacteria 125977
120 Ga0495651_0086705 3300046462 Bacteria 2355
121 Ga0495582_0015224 3300046473 Bacteria 4229
122 Ga0495662_0012954 3300046476 Bacteria 4062
123 Ga0495618_0028379 3300046514 Bacteria 3487
124 Ga0495618_0056642 3300046514 Bacteria 2481
125 Ga0495628_0000139 3300046516 Bacteria 62212
126 Ga0495630_0002767 3300046517 Bacteria 12178
127 Ga0495630_0004491 3300046517 Bacteria 9780
128 Ga0495630_0050673 3300046517 Unclassified 3107
129 Ga0495666_0009837 3300046526 Bacteria 4777
130 Ga0495652_0109798 3300046529 Bacteria 2220
131 Ga0495640_0008296 3300046533 Bacteria 8144
132 Ga0495640_0016709 3300046533 Bacteria 5488
133 Ga0495640_0018537 3300046533 Bacteria 5157
134 Ga0495586_0000242 3300046535 Bacteria 36385
135 Ga0495586_0000302 3300046535 Bacteria 31351
136 Ga0495586_0002435 3300046535 Bacteria 10094
137 Ga0495622_0003242 3300046557 Bacteria 7701
138 Ga0495634_0025961 3300046642 Bacteria 4092
139 Ga0495599_0009612 3300046678 Bacteria 5916
140 Ga0495599_0010392 3300046678 Bacteria 5695
141 Ga0495658_0003586 3300046683 Bacteria 7683
142 Ga0495658_0038629 3300046683 Unclassified 2644
143 Ga0495613_0054635 3300046689 Bacteria 2935
144 Ga0495624_0024122 3300046690 Bacteria 4004
145 Ga0495674_0017655 3300047319 Bacteria 6645
146 Ga0495674_0020675 3300047319 Bacteria 6095
147 Ga0495674_0071437 3300047319 Bacteria 2996
148 Ga0495676_0041133 3300047321 Bacteria 3807
149 Ga0495675_0076446 3300047444 Bacteria 2110
150 Ga0495684_0077717 3300047471 Bacteria 2519
151 Ga0496115_0000900 3300048918 Bacteria 21567
152 Ga0501031_0000113 3300049568 Bacteria 43219
153 Ga0501032_0004250 3300049569 Bacteria 10819
154 Ga0501032_0045330 3300049569 Bacteria 2974
155 Ga0501033_0005945 3300049570 Bacteria 9580
156 Ga0501037_0107292 3300049573 Bacteria 2012
157 Ga0501035_0014293 3300049822 Bacteria 7328
158 Ga0501035_0019055 3300049822 Bacteria 6315
159 Ga0501044_0000792 3300049823 Bacteria 38210
160 Ga0501044_0023447 3300049823 Bacteria 6564
161 nmdc:mga08y16_99475_c1 3300050511 Unclassified 3028

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037471 Ga0395905_0051837 Ga0395905_0051837_207_1913 546
2 3300046514 Ga0495618_0056642 Ga0495618_0056642_792_2438 547
3 3300009094 Ga0111539_10283677 Ga0111539_102836771 558
4 3300035171 Ga0373946_0044778 Ga0373946_0044778_63_1742 558
5 3300035086 Ga0373934_0035455 Ga0373934_0035455_230_1942 559
6 3300046535 Ga0495586_0002435 Ga0495586_0002435_30_1718 559
7 3300005539 Ga0068853_100000001 Ga0068853_100000001230 584
8 3300026041 Ga0207639_10000001 Ga0207639_10000001576 584
9 3300028800 Ga0265338_10000208 Ga0265338_1000020880 595
10 3300005544 Ga0070686_100001346 Ga0070686_1000013463 601
11 3300005549 Ga0070704_100007106 Ga0070704_1000071064 601
12 3300045051 Ga0451576_0030102 Ga0451576_0030102_3321_5180 601
13 3300013104 Ga0157370_10033585 Ga0157370_100335852 602
14 3300025949 Ga0207667_10105665 Ga0207667_101056653 603
15 3300005937 Ga0081455_10080850 Ga0081455_100808502 604
16 3300009176 Ga0105242_10040547 Ga0105242_100405473 604
17 3300028556 Ga0265337_1005360 Ga0265337_10053604 605
18 3300028800 Ga0265338_10022843 Ga0265338_100228435 605
19 3300009177 Ga0105248_10062926 Ga0105248_100629262 606
20 3300025941 Ga0207711_10062144 Ga0207711_100621442 606
21 3300028800 Ga0265338_10013327 Ga0265338_100133272 606
22 3300009093 Ga0105240_10051121 Ga0105240_100511212 608
23 3300025913 Ga0207695_10005629 Ga0207695_1000562910 608
24 3300028563 Ga0265319_1000004 Ga0265319_1000004228 608
25 3300028573 Ga0265334_10007295 Ga0265334_100072953 608
26 3300031595 Ga0265313_10001769 Ga0265313_1000176914 608
27 3300013308 Ga0157375_10000179 Ga0157375_1000017920 609
28 3300014325 Ga0163163_10001396 Ga0163163_1000139614 609
29 3300036647 Ga0316582_0075903 Ga0316582_0075903_173_2005 609
30 3300046454 Ga0495592_0000034 Ga0495592_0000034_59198_61030 609
31 3300046462 Ga0495651_0086705 Ga0495651_0086705_382_2274 609
32 3300046473 Ga0495582_0015224 Ga0495582_0015224_1504_3336 609
33 3300046476 Ga0495662_0012954 Ga0495662_0012954_1543_3375 609
34 3300046516 Ga0495628_0000139 Ga0495628_0000139_40310_42142 609
35 3300046517 Ga0495630_0002767 Ga0495630_0002767_7593_9425 609
36 3300046526 Ga0495666_0009837 Ga0495666_0009837_1923_3755 609
37 3300046533 Ga0495640_0008296 Ga0495640_0008296_3387_5219 609
38 3300046533 Ga0495640_0016709 Ga0495640_0016709_1927_3792 609
39 3300046533 Ga0495640_0018537 Ga0495640_0018537_1166_2998 609
40 3300046535 Ga0495586_0000242 Ga0495586_0000242_7594_9426 609
41 3300046535 Ga0495586_0000302 Ga0495586_0000302_12957_14789 609
42 3300046642 Ga0495634_0025961 Ga0495634_0025961_1400_3232 609
43 3300046678 Ga0495599_0010392 Ga0495599_0010392_2402_4234 609
44 3300046683 Ga0495658_0003586 Ga0495658_0003586_1155_2987 609
45 3300046690 Ga0495624_0024122 Ga0495624_0024122_889_2721 609
46 3300047319 Ga0495674_0017655 Ga0495674_0017655_1548_3380 609
47 3300047319 Ga0495674_0020675 Ga0495674_0020675_2862_4694 609
48 3300047321 Ga0495676_0041133 Ga0495676_0041133_713_2545 609
49 3300047444 Ga0495675_0076446 Ga0495675_0076446_204_2096 609
50 3300025936 Ga0207670_10095041 Ga0207670_100950411 610
51 3300029957 Ga0265324_10002166 Ga0265324_1000216610 610
52 3300047471 Ga0495684_0077717 Ga0495684_0077717_434_2269 610
53 3300048918 Ga0496115_0000900 Ga0496115_0000900_5118_7043 610
54 3300009093 Ga0105240_10022814 Ga0105240_100228144 611
55 3300009551 Ga0105238_10023342 Ga0105238_100233422 611
56 3300009551 Ga0105238_10046029 Ga0105238_100460293 611
57 3300025913 Ga0207695_10049971 Ga0207695_100499717 611
58 3300028800 Ga0265338_10003559 Ga0265338_100035594 611
59 3300037068 Ga0373925_0012239 Ga0373925_0012239_1156_2994 611
60 3300005330 Ga0070690_100009800 Ga0070690_1000098003 612
61 3300005614 Ga0068856_100000311 Ga0068856_10000031140 612
62 3300025949 Ga0207667_10037712 Ga0207667_100377122 612
63 3300026116 Ga0207674_10140948 Ga0207674_101409481 612
64 3300031240 Ga0265320_10000755 Ga0265320_1000075520 612
65 3300031247 Ga0265340_10009266 Ga0265340_100092662 612
66 3300031251 Ga0265327_10006359 Ga0265327_100063597 612
67 3300037068 Ga0373925_0046147 Ga0373925_0046147_305_2143 612
68 3300042876 Ga0451577_0006001 Ga0451577_0006001_5541_7424 612
69 3300044712 Ga0453684_0005466 Ga0453684_0005466_17170_19053 612
70 3300005577 Ga0068857_100020289 Ga0068857_1000202892 613
71 3300013297 Ga0157378_10051490 Ga0157378_100514902 613
72 3300026116 Ga0207674_10016020 Ga0207674_100160203 613
73 3300044712 Ga0453684_0012810 Ga0453684_0012810_7462_9312 613
74 3300045051 Ga0451576_0119804 Ga0451576_0119804_103_1953 613
75 3300046514 Ga0495618_0028379 Ga0495618_0028379_16_1890 613
76 3300005618 Ga0068864_100023796 Ga0068864_1000237964 614
77 3300005841 Ga0068863_100063244 Ga0068863_1000632442 614
78 3300014325 Ga0163163_10062175 Ga0163163_100621753 614
79 3300028800 Ga0265338_10000670 Ga0265338_1000067053 614
80 3300035084 Ga0373928_0000049 Ga0373928_0000049_13806_15650 614
81 3300035085 Ga0373929_0000669 Ga0373929_0000669_2559_4403 614
82 3300035089 Ga0373944_0004904 Ga0373944_0004904_1093_2937 614
83 3300035090 Ga0373949_0004016 Ga0373949_0004016_1266_3110 614
84 3300035112 Ga0373932_0000001 Ga0373932_0000001_615383_617227 614
85 3300035242 Ga0373962_0000005 Ga0373962_0000005_44297_46141 614
86 3300035691 Ga0373931_0000008 Ga0373931_0000008_81957_83801 614
87 3300035692 Ga0373935_0005415 Ga0373935_0005415_481_2325 614
88 3300035725 Ga0373947_0047644 Ga0373947_0047644_649_2493 614
89 3300037068 Ga0373925_0000192 Ga0373925_0000192_18399_20243 614
90 3300045051 Ga0451576_0096162 Ga0451576_0096162_1022_2878 614
91 3300049568 Ga0501031_0000113 Ga0501031_0000113_470_2320 615
92 3300049569 Ga0501032_0045330 Ga0501032_0045330_62_1912 615
93 3300049570 Ga0501033_0005945 Ga0501033_0005945_3188_5038 615
94 3300049822 Ga0501035_0014293 Ga0501035_0014293_611_2461 615
95 3300049823 Ga0501044_0000792 Ga0501044_0000792_36259_38109 615
96 3300046517 Ga0495630_0004491 Ga0495630_0004491_3427_5280 616
97 3300028556 Ga0265337_1005045 Ga0265337_10050454 617
98 3300028558 Ga0265326_10008369 Ga0265326_100083692 617
99 3300028800 Ga0265338_10000048 Ga0265338_10000048159 617
100 3300028800 Ga0265338_10000103 Ga0265338_10000103106 617
101 3300028800 Ga0265338_10002163 Ga0265338_1000216315 617
102 3300028800 Ga0265338_10003771 Ga0265338_1000377112 617
103 3300029957 Ga0265324_10000831 Ga0265324_1000083114 617
104 3300031240 Ga0265320_10002717 Ga0265320_100027179 617
105 3300005365 Ga0070688_100061899 Ga0070688_1000618992 618
106 3300005458 Ga0070681_10024552 Ga0070681_100245522 618
107 3300025912 Ga0207707_10023485 Ga0207707_100234853 618
108 3300031240 Ga0265320_10013252 Ga0265320_100132524 618
109 3300009093 Ga0105240_10052982 Ga0105240_100529823 619
110 3300009551 Ga0105238_10011785 Ga0105238_100117854 619
111 3300046557 Ga0495622_0003242 Ga0495622_0003242_4355_6214 619
112 3300005458 Ga0070681_10028414 Ga0070681_100284142 620
113 3300025913 Ga0207695_10146157 Ga0207695_101461572 620
114 3300025921 Ga0207652_10064207 Ga0207652_100642072 620
115 3300025944 Ga0207661_10017131 Ga0207661_100171313 620
116 3300028556 Ga0265337_1000143 Ga0265337_100014318 620
117 3300028666 Ga0265336_10001509 Ga0265336_100015098 620
118 3300028800 Ga0265338_10003514 Ga0265338_100035146 620
119 3300028800 Ga0265338_10004881 Ga0265338_100048813 620
120 3300031240 Ga0265320_10010427 Ga0265320_100104276 620
121 3300035692 Ga0373935_0003886 Ga0373935_0003886_2602_4467 620
122 3300035695 Ga0373927_0002705 Ga0373927_0002705_10041_11906 620
123 3300037068 Ga0373925_0001101 Ga0373925_0001101_11667_13532 620
124 3300005614 Ga0068856_100019888 Ga0068856_1000198885 621
125 3300005617 Ga0068859_100005610 Ga0068859_10000561010 621
126 3300005617 Ga0068859_100083792 Ga0068859_1000837921 621
127 3300006931 Ga0097620_100005610 Ga0097620_1000056103 621
128 3300006931 Ga0097620_100083795 Ga0097620_1000837951 621
129 3300025924 Ga0207694_10079849 Ga0207694_100798492 621
130 3300026078 Ga0207702_10032019 Ga0207702_100320193 621
131 3300028556 Ga0265337_1000020 Ga0265337_100002071 621
132 3300028800 Ga0265338_10005174 Ga0265338_100051747 621
133 3300028800 Ga0265338_10010381 Ga0265338_100103812 621
134 3300028800 Ga0265338_10011074 Ga0265338_100110748 621
135 3300029957 Ga0265324_10006944 Ga0265324_100069443 621
136 3300031247 Ga0265340_10003639 Ga0265340_100036393 621
137 3300031249 Ga0265339_10002567 Ga0265339_100025676 621
138 3300031251 Ga0265327_10003221 Ga0265327_1000322113 621
139 3300031344 Ga0265316_10020895 Ga0265316_100208953 621
140 3300036401 Ga0373937_0102827 Ga0373937_0102827_571_2469 621
141 3300046517 Ga0495630_0050673 Ga0495630_0050673_642_2540 621
142 3300046529 Ga0495652_0109798 Ga0495652_0109798_19_1917 621
143 3300046678 Ga0495599_0009612 Ga0495599_0009612_155_2053 621
144 3300046689 Ga0495613_0054635 Ga0495613_0054635_857_2731 621
145 3300047319 Ga0495674_0071437 Ga0495674_0071437_489_2387 621
146 3300005544 Ga0070686_100021260 Ga0070686_1000212604 622
147 3300006844 Ga0075428_100041150 Ga0075428_1000411503 622
148 3300009094 Ga0111539_10119331 Ga0111539_101193312 622
149 3300027907 Ga0207428_10083701 Ga0207428_100837012 622
150 3300031251 Ga0265327_10003420 Ga0265327_1000342013 622
151 3300042876 Ga0451577_0092674 Ga0451577_0092674_189_2090 622
152 3300046683 Ga0495658_0038629 Ga0495658_0038629_483_2369 622
153 3300050511 nmdc:mga08y16_99475_c1 nmdc:mga08y16_99475_c1_643_2526 622
154 3300003320 rootH2_10012525 rootH2_100125255 623
155 3300028800 Ga0265338_10001089 Ga0265338_1000108924 623
156 3300028800 Ga0265338_10005026 Ga0265338_1000502610 623
157 3300031344 Ga0265316_10029943 Ga0265316_100299434 623
158 3300049569 Ga0501032_0004250 Ga0501032_0004250_7019_8899 623
159 3300049573 Ga0501037_0107292 Ga0501037_0107292_82_1962 623
160 3300049822 Ga0501035_0019055 Ga0501035_0019055_4376_6256 623
161 3300049823 Ga0501044_0023447 Ga0501044_0023447_4583_6463 623

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01272

GreA_GreB

Transcription elongation factor, GreA/GreB, C-term

526

602

0.97

PF03449

GreA_GreB_N

Transcription elongation factor, N-terminal

450

519

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6rin-assembly1.cif.gz_F cryo-em structure of e. coli rna polymerase backtracked elongation complex bound to greb transcription factor 0.8295 451 602
6rin-assembly1.cif.gz_F cryo-em structure of e. coli rna polymerase backtracked elongation complex bound to greb transcription factor 0.8013 451 602
1grj-assembly1.cif.gz_A grea transcript cleavage factor from escherichia coli 0.7993 449 602
7egs-assembly1.cif.gz_B the crystal structure of lobe domain of e. coli rna polymerase complexed with the c-terminal domain of uvrd 0.7979 28 75
1grj-assembly1.cif.gz_A grea transcript cleavage factor from escherichia coli 0.7856 449 602
ID Description Score Start End Superfamily
af_P0A6W5_1_75_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9712 449 521 1.10.287.180
af_Q2FXW7_4_78_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9616 451 521 1.10.287.180
1grjA01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9522 449 521 1.10.287.180
af_P9WMT9_4_78_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9367 449 522 1.10.287.180
af_P30128_1_76_1.10.287.180 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Transcription elongation factor, GreA/GreB, N-terminal domain 0.9362 451 522 1.10.287.180
ID Description Score Start End GO Terms
AF-A0A2M7STR4-F1-model_v4 Transcription elongation factor GreA 0.9345 530 601 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A3C1WF27-F1-model_v4 Transcription elongation factor GreA 0.9336 531 602 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A0S7ZE44-F1-model_v4 Transcription elongation factor GreA (Transcript cleavage factor GreA) 0.9307 450 601 GO:0003677
GO:0006354
GO:0032784
GO:0070063
AF-A0A1W1BIX9-F1-model_v4 Transcription elongation factor GreA (Transcript cleavage factor GreA) 0.928 450 605 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063
AF-A0A0N8S657-F1-model_v4 Transcription elongation factor GreB 0.9262 527 601 GO:0003677
GO:0003746
GO:0006354
GO:0032784
GO:0070063

Feature Viewer

pLDDT pTM Quality
86.65 0.55 Medium
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Predicted Structure (AlphaFold2)

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