F237101

General Info

Members Datasets Scaffolds Average Seq Length
161 116 152 284

Family's Representative Sequence

Representative Sequence 3300025298|Ga0209050_1002398|Ga0209050_100239814
Length 315
Sequence MWLVIGGGQGLAIIQMEMITRWGMGFRICAMKNIPVRQIKAAPKEANVSEGFSIRDVRHLLAGKDMVQELHRHDFFYVLALKKGAGHHEIDFTRYKVCDHAVFLMRPGQVHQHTLKAGSTGYLVEFSPDFYRPRDKASRQPLRKAMATNLHSLDATRFNKLLPLLTYIFQEYTDKQEGHGEVIKANLGIFFIELVRQNSKAASNNANTYAQERLEDFLELLEKHIAQHKQVAQYSDMLNLSPYQLNAITKATLGKTCSELINAHIILESKRYLLATSNQVNQVAYYLGYEDVSYFIRFFKKHTGYSPEAFRHNFR

Samples

Sample ID Description Type Environment
1 2738541283 Pedobacter sp. OK701 Isolate Unclassified
2 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
3 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
4 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
5 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
6 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
7 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
8 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
9 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
10 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
11 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
12 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
13 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
14 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
15 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
16 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
17 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
18 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
19 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
20 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
21 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
46 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
54 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
67 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
68 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
69 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
70 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
71 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
72 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
75 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
80 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
81 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
82 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
83 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
88 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
89 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
90 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
91 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
97 3300049677 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control Metagenome Rhizosphere
98 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
99 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
100 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
101 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
102 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
103 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
104 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
105 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
106 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
107 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
108 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
109 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
110 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
111 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
112 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
113 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
114 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
115 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
116 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.41
Metatranscriptomes 0
Isolates 5.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.33
Nodule 0
Rhizoplane 0
Rhizosphere 60.87
Stem 0
Stem Tuber 0
Unclassified 11.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1012198 3300002739 Bacteria 1136
2 JGI25153J46596_10034093 3300003215 Unclassified 1669
3 rootL2_10011536 3300003322 Bacteria 7296
4 rootL2_10077340 3300003322 Bacteria 4202
5 rootL2_10119806 3300003322 Bacteria 5190
6 rootL2_10205891 3300003322 Bacteria 3206
7 rootL2_10227036 3300003322 Bacteria 5355
8 JGI25160J50197_1000925 3300003354 Bacteria 15441
9 JGI25160J50197_1013995 3300003354 Bacteria 2705
10 Ga0055542_1007150 3300003762 Unclassified 2302
11 Ga0055526_1010384 3300003771 Bacteria 4339
12 Ga0055528_1000447 3300003790 Bacteria 33056
13 Ga0055530_10009769 3300003791 Bacteria 3633
14 Ga0055530_10023170 3300003791 Bacteria 1790
15 Ga0065165_1000012 3300005262 Bacteria 303241
16 Ga0065704_10074738 3300005289 Bacteria 6047
17 Ga0070666_10092930 3300005335 Bacteria 2074
18 Ga0070682_100421708 3300005337 Bacteria 1014
19 Ga0068853_100002429 3300005539 Bacteria 13931
20 Ga0068853_100017026 3300005539 Bacteria 5994
21 Ga0068853_100030061 3300005539 Bacteria 4586
22 Ga0068856_100322408 3300005614 Unclassified 1562
23 Ga0068859_100265561 3300005617 Unclassified 1808
24 Ga0068864_100115468 3300005618 Bacteria 2395
25 Ga0068860_100014042 3300005843 Bacteria 7856
26 Ga0068862_100039406 3300005844 Unclassified 4013
27 Ga0097621_100033594 3300006237 Bacteria 4086
28 Ga0097620_100265555 3300006931 Unclassified 1808
29 Ga0105240_10000242 3300009093 Bacteria 108001
30 Ga0105240_10000339 3300009093 Bacteria 87543
31 Ga0105240_10062799 3300009093 Bacteria 4623
32 Ga0105240_10170408 3300009093 Bacteria 2579
33 Ga0105240_10212410 3300009093 Bacteria 2260
34 Ga0105245_10322113 3300009098 Bacteria 1523
35 Ga0114129_10007582 3300009147 Bacteria 15450
36 Ga0105237_10007266 3300009545 Bacteria 12154
37 Ga0105237_10012929 3300009545 Bacteria 8769
38 Ga0105238_10071522 3300009551 Bacteria 3466
39 Ga0105249_10061705 3300009553 Bacteria 3440
40 Ga0105239_10001445 3300010375 Bacteria 31648
41 Ga0105239_10032390 3300010375 Bacteria 5745
42 Ga0105239_10497363 3300010375 Unclassified 1386
43 Ga0157371_10099874 3300013102 Bacteria 2058
44 Ga0157370_10000483 3300013104 Bacteria 49618
45 Ga0157370_10006807 3300013104 Bacteria 12534
46 Ga0157370_10037625 3300013104 Bacteria 4690
47 Ga0163162_10008511 3300013306 Bacteria 10005
48 Ga0157372_10372737 3300013307 Bacteria 1663
49 Ga0182008_10039465 3300014497 Bacteria 2359
50 Ga0157376_10379046 3300014969 Bacteria 1362
51 Ga0182006_1000643 3300015261 Bacteria 24749
52 Ga0182006_1019121 3300015261 Bacteria 2888
53 Ga0163161_10006365 3300017792 Bacteria 8172
54 Ga0163161_10140788 3300017792 Bacteria 1827
55 Ga0209436_100969 3300025208 Bacteria 11188
56 Ga0209258_100278 3300025242 Bacteria 86316
57 Ga0209148_1000248 3300025254 Bacteria 86083
58 Ga0209673_1000446 3300025273 Bacteria 70476
59 Ga0209673_1015728 3300025273 Bacteria 2859
60 Ga0209130_1001912 3300025284 Bacteria 11729
61 Ga0209564_1001170 3300025295 Bacteria 30528
62 Ga0209564_1002721 3300025295 Bacteria 13339
63 Ga0209758_1001411 3300025297 Bacteria 28476
64 Ga0209758_1002522 3300025297 Bacteria 18526
65 Ga0209050_1001619 3300025298 Bacteria 23124
66 Ga0209050_1002398 3300025298 Bacteria 16238
67 Ga0209050_1015891 3300025298 Bacteria 3121
68 Ga0207426_1000288 3300025302 Bacteria 100477
69 Ga0207426_1000754 3300025302 Bacteria 36199
70 Ga0207426_1006625 3300025302 Bacteria 4985
71 Ga0209051_1009598 3300025303 Bacteria 4969
72 Ga0209257_1000686 3300025304 Bacteria 52620
73 Ga0207680_10097707 3300025903 Bacteria 1881
74 Ga0207695_10000066 3300025913 Bacteria 334103
75 Ga0207695_10000469 3300025913 Bacteria 87551
76 Ga0207695_10081665 3300025913 Bacteria 3271
77 Ga0207671_10036945 3300025914 Bacteria 3622
78 Ga0207671_10133010 3300025914 Bacteria 1910
79 Ga0207669_10390236 3300025937 Bacteria 1087
80 Ga0207639_10014430 3300026041 Bacteria 5557
81 Ga0207639_10015016 3300026041 Bacteria 5455
82 Ga0207639_10137192 3300026041 Bacteria 2033
83 Ga0207702_10284437 3300026078 Unclassified 1564
84 Ga0207676_10214997 3300026095 Bacteria 1708
85 Ga0268265_10030022 3300028380 Unclassified 3911
86 Ga0268264_10061175 3300028381 Bacteria 3158
87 Ga0307515_10000135 3300028794 Bacteria 175323
88 Ga0307515_10102161 3300028794 Bacteria 3452
89 Ga0307511_10000387 3300030521 Bacteria 47111
90 Ga0316179_1098529 3300030734 Bacteria 4246
91 Ga0307509_10067153 3300031507 Bacteria 3758
92 Ga0307408_100001565 3300031548 Bacteria 16910
93 Ga0307408_100001580 3300031548 Bacteria 16814
94 Ga0307408_100005122 3300031548 Bacteria 8797
95 Ga0307508_10001251 3300031616 Bacteria 29009
96 Ga0307514_10065754 3300031649 Unclassified 2745
97 Ga0307405_10000001 3300031731 Bacteria 1731270
98 Ga0307413_10002025 3300031824 Bacteria 8062
99 Ga0307413_10075178 3300031824 Bacteria 2143
100 Ga0307518_10096481 3300031838 Bacteria 2121
101 Ga0307410_10013903 3300031852 Bacteria 4714
102 Ga0307406_10000042 3300031901 Bacteria 72211
103 Ga0307407_10004183 3300031903 Bacteria 6083
104 Ga0307412_10000519 3300031911 Bacteria 23013
105 Ga0307414_10000022 3300032004 Bacteria 212123
106 Ga0307414_10000574 3300032004 Bacteria 19147
107 Ga0307414_10001002 3300032004 Bacteria 14432
108 Ga0307414_10025529 3300032004 Bacteria 3787
109 Ga0307411_10000001 3300032005 Bacteria 931810
110 Ga0439466_0000804 3300041411 Bacteria 11943
111 Ga0451851_0405561 3300041507 Bacteria 1823
112 Ga0466965_0008619 3300044683 Bacteria 4718
113 Ga0453684_0001324 3300044712 Bacteria 73175
114 Ga0453684_0011012 3300044712 Bacteria 15279
115 Ga0453684_0286253 3300044712 Bacteria 1878
116 Ga0466957_0007111 3300044842 Bacteria 6330
117 Ga0466957_0039239 3300044842 Bacteria 2856
118 Ga0451576_0243107 3300045051 Bacteria 1880
119 Ga0495638_0000008 3300046460 Bacteria 565643
120 Ga0495632_0173149 3300046519 Bacteria 991
121 Ga0495648_0068536 3300046524 Bacteria 2069
122 Ga0495668_0000112 3300046616 Bacteria 128501
123 Ga0495661_0014316 3300046665 Bacteria 5316
124 Ga0495686_0045780 3300047472 Bacteria 2768
125 Ga0496123_0004827 3300048926 Bacteria 13903
126 Ga0501034_0013875 3300049571 Bacteria 8295
127 Ga0501047_0393520 3300049581 Unclassified 1219
128 Ga0501238_000334 3300049671 Bacteria 6113
129 Ga0501238_001796 3300049671 Bacteria 2502
130 Ga0501247_002826 3300049677 Bacteria 1827
131 Ga0501249_001318 3300049679 Bacteria 5165
132 Ga0501249_014856 3300049679 Unclassified 1661
133 Ga0501257_035829 3300049686 Unclassified 1207
134 Ga0501264_000134 3300049761 Bacteria 11620
135 Ga0501266_000016 3300049763 Bacteria 164181
136 Ga0501280_001301 3300049776 Bacteria 4778
137 nmdc:mga0k408_92620_c1 3300050493 Bacteria 1776
138 Ga0500644_0013149 3300053088 Bacteria 2306
139 Ga0500646_0023728 3300053090 Bacteria 1647
140 Ga0500583_0000048 3300053092 Bacteria 78503
141 Ga0500583_0001422 3300053092 Bacteria 6860
142 Ga0500556_0098953 3300053104 Bacteria 1121
143 Ga0500569_002524 3300053109 Unclassified 3621
144 Ga0500658_0028665 3300053134 Unclassified 2162
145 Ga0500658_0243538 3300053134 Unclassified 826
146 Ga0500559_0014881 3300053136 Bacteria 3287
147 Ga0500577_0017147 3300053142 Bacteria 2300
148 Ga0500604_0001966 3300053151 Bacteria 5706
149 Ga0500616_0000003 3300053153 Bacteria 1220687
150 Ga0500627_0061845 3300053158 Bacteria 1648
151 Ga0500633_0084397 3300053160 Unclassified 1153
152 Ga0500611_000090 3300053727 Bacteria 26074

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053134 Ga0500658_0243538 Ga0500658_0243538_70_792 238
2 3300032004 Ga0307414_10000574 Ga0307414_100005741 250
3 iso_pu_bacteria 2896109856 2896111569 253
4 3300031548 Ga0307408_100001580 Ga0307408_10000158010 257
5 3300031901 Ga0307406_10000042 Ga0307406_1000004215 257
6 3300053136 Ga0500559_0014881 Ga0500559_0014881_1105_1950 258
7 3300044842 Ga0466957_0039239 Ga0466957_0039239_1003_1854 260
8 3300053092 Ga0500583_0000048 Ga0500583_0000048_12280_13143 263
9 3300031852 Ga0307410_10013903 Ga0307410_100139034 268
10 3300049776 Ga0501280_001301 Ga0501280_001301_3074_3928 268
11 iso_pu_bacteria 2929239360 2929245133 269
12 3300003322 rootL2_10077340 rootL2_100773402 272
13 3300005614 Ga0068856_100322408 Ga0068856_1003224082 272
14 3300026078 Ga0207702_10284437 Ga0207702_102844372 272
15 3300028794 Ga0307515_10102161 Ga0307515_101021614 273
16 3300005539 Ga0068853_100002429 Ga0068853_10000242910 274
17 3300009093 Ga0105240_10212410 Ga0105240_102124102 274
18 3300009551 Ga0105238_10071522 Ga0105238_100715221 274
19 3300010375 Ga0105239_10032390 Ga0105239_100323906 274
20 3300025913 Ga0207695_10081665 Ga0207695_100816653 274
21 3300026041 Ga0207639_10014430 Ga0207639_100144304 274
22 3300009093 Ga0105240_10000242 Ga0105240_1000024257 275
23 3300009093 Ga0105240_10000339 Ga0105240_1000033940 275
24 3300009093 Ga0105240_10170408 Ga0105240_101704083 275
25 3300009545 Ga0105237_10012929 Ga0105237_100129292 275
26 3300010375 Ga0105239_10001445 Ga0105239_100014459 275
27 3300013307 Ga0157372_10372737 Ga0157372_103727372 275
28 3300025913 Ga0207695_10000066 Ga0207695_10000066217 275
29 3300025913 Ga0207695_10000469 Ga0207695_1000046941 275
30 3300025914 Ga0207671_10133010 Ga0207671_101330102 275
31 3300044683 Ga0466965_0008619 Ga0466965_0008619_2193_3020 275
32 3300047472 Ga0495686_0045780 Ga0495686_0045780_1671_2528 278
33 iso_pu_bacteria 2857613821 2857617690 280
34 3300003762 Ga0055542_1007150 Ga0055542_10071501 281
35 3300005539 Ga0068853_100030061 Ga0068853_1000300614 281
36 3300013104 Ga0157370_10037625 Ga0157370_100376253 281
37 3300015261 Ga0182006_1019121 Ga0182006_10191214 281
38 3300025242 Ga0209258_100278 Ga0209258_10027856 281
39 3300025254 Ga0209148_1000248 Ga0209148_100024856 281
40 3300026041 Ga0207639_10015016 Ga0207639_100150164 281
41 3300049571 Ga0501034_0013875 Ga0501034_0013875_3310_4161 281
42 3300053090 Ga0500646_0023728 Ga0500646_0023728_341_1186 281
43 3300053092 Ga0500583_0001422 Ga0500583_0001422_3676_4521 281
44 3300053109 Ga0500569_002524 Ga0500569_002524_1969_2814 281
45 3300053134 Ga0500658_0028665 Ga0500658_0028665_140_985 281
46 3300053142 Ga0500577_0017147 Ga0500577_0017147_228_1073 281
47 3300053160 Ga0500633_0084397 Ga0500633_0084397_77_922 281
48 iso_pu_bacteria 2818991460 2819679576 281
49 iso_pu_bacteria 2904555929 2904557860 281
50 iso_pu_bacteria 2929177148 2929180410 281
51 iso_pu_bacteria 2945977869 2945982803 281
52 iso_pu_bacteria 2946013367 2946017804 281
53 3300013306 Ga0163162_10008511 Ga0163162_100085119 282
54 3300031548 Ga0307408_100005122 Ga0307408_1000051223 283
55 3300031911 Ga0307412_10000519 Ga0307412_1000051911 283
56 3300032004 Ga0307414_10001002 Ga0307414_100010028 283
57 3300044842 Ga0466957_0007111 Ga0466957_0007111_1731_2606 283
58 3300046519 Ga0495632_0173149 Ga0495632_0173149_74_925 283
59 iso_pu_bacteria 2738541283 2738758522 283
60 3300003322 rootL2_10011536 rootL2_100115366 284
61 3300009545 Ga0105237_10007266 Ga0105237_1000726615 284
62 3300010375 Ga0105239_10497363 Ga0105239_104973632 284
63 3300013104 Ga0157370_10000483 Ga0157370_1000048334 284
64 3300013104 Ga0157370_10006807 Ga0157370_100068075 284
65 3300014497 Ga0182008_10039465 Ga0182008_100394653 284
66 3300015261 Ga0182006_1000643 Ga0182006_100064325 284
67 3300017792 Ga0163161_10006365 Ga0163161_100063654 284
68 3300025914 Ga0207671_10036945 Ga0207671_100369454 284
69 3300030734 Ga0316179_1098529 Ga0316179_10985292 284
70 3300031548 Ga0307408_100001565 Ga0307408_10000156510 284
71 3300031616 Ga0307508_10001251 Ga0307508_1000125122 284
72 3300031824 Ga0307413_10002025 Ga0307413_100020256 284
73 3300031824 Ga0307413_10075178 Ga0307413_100751782 284
74 3300031903 Ga0307407_10004183 Ga0307407_100041836 284
75 3300032004 Ga0307414_10000022 Ga0307414_10000022158 284
76 3300032005 Ga0307411_10000001 Ga0307411_10000001532 284
77 3300046460 Ga0495638_0000008 Ga0495638_0000008_124025_124879 284
78 3300048926 Ga0496123_0004827 Ga0496123_0004827_2942_3823 284
79 3300049671 Ga0501238_000334 Ga0501238_000334_2308_3162 284
80 3300049679 Ga0501249_001318 Ga0501249_001318_1078_1938 284
81 3300049679 Ga0501249_014856 Ga0501249_014856_725_1585 284
82 3300049763 Ga0501266_000016 Ga0501266_000016_48572_49432 284
83 3300002739 JGI25158J39367_1012198 JGI25158J39367_10121981 285
84 3300003215 JGI25153J46596_10034093 JGI25153J46596_100340932 285
85 3300003322 rootL2_10119806 rootL2_101198062 285
86 3300003322 rootL2_10205891 rootL2_102058914 285
87 3300003322 rootL2_10227036 rootL2_102270364 285
88 3300003354 JGI25160J50197_1000925 JGI25160J50197_10009254 285
89 3300003354 JGI25160J50197_1013995 JGI25160J50197_10139953 285
90 3300003771 Ga0055526_1010384 Ga0055526_10103841 285
91 3300003790 Ga0055528_1000447 Ga0055528_100044721 285
92 3300003791 Ga0055530_10009769 Ga0055530_100097694 285
93 3300003791 Ga0055530_10023170 Ga0055530_100231702 285
94 3300005262 Ga0065165_1000012 Ga0065165_100001280 285
95 3300005289 Ga0065704_10074738 Ga0065704_100747383 285
96 3300005335 Ga0070666_10092930 Ga0070666_100929303 285
97 3300005337 Ga0070682_100421708 Ga0070682_1004217081 285
98 3300005539 Ga0068853_100017026 Ga0068853_1000170263 285
99 3300005617 Ga0068859_100265561 Ga0068859_1002655612 285
100 3300005618 Ga0068864_100115468 Ga0068864_1001154683 285
101 3300005843 Ga0068860_100014042 Ga0068860_1000140426 285
102 3300005844 Ga0068862_100039406 Ga0068862_1000394061 285
103 3300006237 Ga0097621_100033594 Ga0097621_1000335945 285
104 3300006931 Ga0097620_100265555 Ga0097620_1002655552 285
105 3300009093 Ga0105240_10062799 Ga0105240_100627994 285
106 3300009098 Ga0105245_10322113 Ga0105245_103221132 285
107 3300009147 Ga0114129_10007582 Ga0114129_100075827 285
108 3300009553 Ga0105249_10061705 Ga0105249_100617052 285
109 3300013102 Ga0157371_10099874 Ga0157371_100998742 285
110 3300014969 Ga0157376_10379046 Ga0157376_103790462 285
111 3300017792 Ga0163161_10140788 Ga0163161_101407882 285
112 3300025208 Ga0209436_100969 Ga0209436_1009694 285
113 3300025273 Ga0209673_1000446 Ga0209673_100044611 285
114 3300025273 Ga0209673_1015728 Ga0209673_10157283 285
115 3300025284 Ga0209130_1001912 Ga0209130_10019124 285
116 3300025295 Ga0209564_1001170 Ga0209564_100117024 285
117 3300025295 Ga0209564_1002721 Ga0209564_10027214 285
118 3300025297 Ga0209758_1001411 Ga0209758_100141119 285
119 3300025297 Ga0209758_1002522 Ga0209758_10025225 285
120 3300025298 Ga0209050_1001619 Ga0209050_100161915 285
121 3300025298 Ga0209050_1002398 Ga0209050_100239814 285
122 3300025298 Ga0209050_1015891 Ga0209050_10158913 285
123 3300025302 Ga0207426_1000288 Ga0207426_100028816 285
124 3300025302 Ga0207426_1000754 Ga0207426_100075421 285
125 3300025302 Ga0207426_1006625 Ga0207426_10066253 285
126 3300025303 Ga0209051_1009598 Ga0209051_10095985 285
127 3300025304 Ga0209257_1000686 Ga0209257_100068632 285
128 3300025903 Ga0207680_10097707 Ga0207680_100977072 285
129 3300025937 Ga0207669_10390236 Ga0207669_103902362 285
130 3300026041 Ga0207639_10137192 Ga0207639_101371922 285
131 3300026095 Ga0207676_10214997 Ga0207676_102149973 285
132 3300028380 Ga0268265_10030022 Ga0268265_100300225 285
133 3300028381 Ga0268264_10061175 Ga0268264_100611753 285
134 3300028794 Ga0307515_10000135 Ga0307515_1000013510 285
135 3300030521 Ga0307511_10000387 Ga0307511_1000038716 285
136 3300031507 Ga0307509_10067153 Ga0307509_100671535 285
137 3300031649 Ga0307514_10065754 Ga0307514_100657542 285
138 3300031731 Ga0307405_10000001 Ga0307405_10000001812 285
139 3300031838 Ga0307518_10096481 Ga0307518_100964812 285
140 3300032004 Ga0307414_10025529 Ga0307414_100255291 285
141 3300041411 Ga0439466_0000804 Ga0439466_0000804_3957_4814 285
142 3300041507 Ga0451851_0405561 Ga0451851_0405561_34_891 285
143 3300044712 Ga0453684_0001324 Ga0453684_0001324_44507_45370 285
144 3300044712 Ga0453684_0011012 Ga0453684_0011012_6206_7069 285
145 3300044712 Ga0453684_0286253 Ga0453684_0286253_502_1365 285
146 3300045051 Ga0451576_0243107 Ga0451576_0243107_351_1214 285
147 3300046524 Ga0495648_0068536 Ga0495648_0068536_906_1763 285
148 3300046616 Ga0495668_0000112 Ga0495668_0000112_115227_116084 285
149 3300046665 Ga0495661_0014316 Ga0495661_0014316_142_999 285
150 3300049581 Ga0501047_0393520 Ga0501047_0393520_140_1003 285
151 3300049671 Ga0501238_001796 Ga0501238_001796_1508_2365 285
152 3300049677 Ga0501247_002826 Ga0501247_002826_33_890 285
153 3300049686 Ga0501257_035829 Ga0501257_035829_263_1150 285
154 3300049761 Ga0501264_000134 Ga0501264_000134_277_1134 285
155 3300050493 nmdc:mga0k408_92620_c1 nmdc:mga0k408_92620_c1_232_1095 285
156 3300053088 Ga0500644_0013149 Ga0500644_0013149_94_954 285
157 3300053104 Ga0500556_0098953 Ga0500556_0098953_31_888 285
158 3300053151 Ga0500604_0001966 Ga0500604_0001966_1444_2301 285
159 3300053153 Ga0500616_0000003 Ga0500616_0000003_415922_416779 285
160 3300053158 Ga0500627_0061845 Ga0500627_0061845_436_1293 285
161 3300053727 Ga0500611_000090 Ga0500611_000090_21257_22123 285

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

234

313

0.98

PF02311

AraC_binding

AraC-like ligand binding domain

62

142

0.94

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

273

312

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8997 182 281
1bl0-assembly1.cif.gz_A multiple antibiotic resistance protein (mara)/dna complex 0.8933 183 281
3lsg-assembly3.cif.gz_E the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8786 182 276
5fq0-assembly2.cif.gz_D the structure of kdgf from halomonas sp. 0.8729 36 96
3lsg-assembly2.cif.gz_D the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8697 182 272
ID Description Score Start End Superfamily
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9759 239 281 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9477 235 282 1.10.10.60
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9467 233 284 1.10.10.60
1bl0A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9414 238 281 1.10.10.60
3lsgB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9392 238 281 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A1B7JQD5-F1-model_v4 AraC family transcriptional regulator 0.9635 184 285 GO:0003700
GO:0043565
AF-A0A1W6LKE3-F1-model_v4 Xylose operon regulatory protein 0.959 182 283 GO:0000976
GO:0003700
AF-A0A0P0M2X7-F1-model_v4 Transcriptional regulator, AraC family 0.9516 180 283 GO:0003700
GO:0043565
AF-A0A1B7JQD5-F1-model_v4 AraC family transcriptional regulator 0.9455 184 285 GO:0003700
GO:0043565
AF-A0A497RNU0-F1-model_v4 Transcriptional regulator 0.9393 183 285 GO:0000976
GO:0003700

Feature Viewer

pLDDT pTM Quality
88.66 0.83 High
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Predicted Structure (AlphaFold2)

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