F236608

General Info

Members Datasets Scaffolds Average Seq Length
161 110 322 169

Family's Representative Sequence

Representative Sequence 3300005983|Ga0081540_1014237|Ga0081540_10142374
Length 158
Sequence VAAAERLADGIDAFIDFVGRITAWSSFALALVMATNVLLRYGFSTGSVWAQELEWHLMSPICLFGMSYALRHGEHVRVDVLFASFSQRTKDLVEVITAIYLSINYVLQSWSVGEGSANPGGIPARYLLKSLIPIGFALFFLQSLAQAIRFYLAWRREA

Samples

Sample ID Description Type Environment
1 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
4 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
9 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
10 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
11 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
12 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
13 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
14 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
15 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
16 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
19 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
24 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
27 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
31 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
32 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
33 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027617 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
49 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
50 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
51 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
52 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
53 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
54 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
55 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
56 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
57 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
58 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
59 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
62 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
63 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
64 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
65 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
66 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
67 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
68 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
69 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
70 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
83 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
84 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
85 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
86 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
87 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
88 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
89 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
90 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
91 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
94 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
95 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
96 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
97 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
98 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
99 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
100 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
101 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
102 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
103 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
104 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
105 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
106 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
107 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
108 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
109 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
110 2828305725 Xanthobacter tagetidis DSM 11105 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.38
Metatranscriptomes 0
Isolates 0.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.21
Nodule 0
Rhizoplane 3.11
Rhizosphere 90.06
Stem 0
Stem Tuber 0
Unclassified 8.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081540_1014237 3300005983 Bacteria 5109
2 MBSR1b_contig_8405598 2162886012 Bacteria 1603
3 JGI25404J52841_10002017 3300003659 Bacteria 3749
4 JGI25405J52794_10003797 3300003911 Bacteria 2671
5 Ga0065715_10113721 3300005293 Bacteria 2477
6 Ga0065715_10138513 3300005293 Bacteria 1890
7 Ga0065715_10395470 3300005293 Bacteria 888
8 Ga0070690_100009646 3300005330 Bacteria 5597
9 Ga0070690_101113461 3300005330 Bacteria 627
10 Ga0070660_100278393 3300005339 Bacteria 1369
11 Ga0070662_100667389 3300005457 Bacteria 878
12 Ga0070672_100622680 3300005543 Bacteria 941
13 Ga0070693_100320046 3300005547 Bacteria 1052
14 Ga0081455_10000031 3300005937 Bacteria 146486
15 Ga0081455_10000217 3300005937 Bacteria 73661
16 Ga0081455_10054473 3300005937 Bacteria 3409
17 Ga0081455_10577572 3300005937 Bacteria 737
18 Ga0081538_10151723 3300005981 Bacteria 1048
19 Ga0081538_10154222 3300005981 Bacteria 1034
20 Ga0081540_1000011 3300005983 Bacteria 191880
21 Ga0081540_1053673 3300005983 Bacteria 1974
22 Ga0075367_10105475 3300006178 Bacteria 1726
23 Ga0075370_10129824 3300006353 Bacteria 1470
24 Ga0075428_100105492 3300006844 Bacteria 3073
25 Ga0075428_100416254 3300006844 Bacteria 1440
26 Ga0075430_100308881 3300006846 Bacteria 1308
27 Ga0075431_100767856 3300006847 Bacteria 938
28 Ga0075429_100001619 3300006880 Bacteria 18603
29 Ga0075429_100784214 3300006880 Bacteria 835
30 Ga0068865_100213427 3300006881 Bacteria 1505
31 Ga0105245_11425297 3300009098 Unclassified 743
32 Ga0114129_10002688 3300009147 Bacteria 24742
33 Ga0114129_10271616 3300009147 Bacteria 2268
34 Ga0105243_10257929 3300009148 Bacteria 1560
35 Ga0105242_10390343 3300009176 Unclassified 1296
36 Ga0105249_10135192 3300009553 Bacteria 2358
37 Ga0105239_10446544 3300010375 Bacteria 1467
38 Ga0157374_11633393 3300013296 Unclassified 669
39 Ga0157378_10581142 3300013297 Bacteria 1129
40 Ga0157378_10700055 3300013297 Bacteria 1032
41 Ga0163162_10703305 3300013306 Bacteria 1132
42 Ga0157375_11171996 3300013308 Bacteria 901
43 Ga0157380_10519699 3300014326 Bacteria 1161
44 Ga0157376_11258333 3300014969 Bacteria 769
45 Ga0163161_10309190 3300017792 Bacteria 1247
46 Ga0207657_10093261 3300025919 Bacteria 2508
47 Ga0207706_10168935 3300025933 Bacteria 1922
48 Ga0207709_10292890 3300025935 Bacteria 1207
49 Ga0207691_10001066 3300025940 Bacteria 27265
50 Ga0207678_10368695 3300026067 Bacteria 1240
51 Ga0207674_10100621 3300026116 Bacteria 2872
52 Ga0209967_1000200 3300027364 Bacteria 8498
53 Ga0210000_1000298 3300027462 Bacteria 7143
54 Ga0209995_1000380 3300027471 Bacteria 6919
55 Ga0209999_1000433 3300027543 Bacteria 6459
56 Ga0209970_1005501 3300027614 Bacteria 2090
57 Ga0210002_1034353 3300027617 Bacteria 850
58 Ga0209983_1004909 3300027665 Bacteria 2795
59 Ga0209971_1002288 3300027682 Bacteria 4637
60 Ga0209971_1079446 3300027682 Unclassified 798
61 Ga0209966_1021169 3300027695 Bacteria 1264
62 Ga0209974_10007667 3300027876 Bacteria 3713
63 Ga0209974_10051656 3300027876 Bacteria 1383
64 Ga0307405_11301494 3300031731 Bacteria 632
65 Ga0307413_10339548 3300031824 Bacteria 1155
66 Ga0307409_100149143 3300031995 Bacteria 2028
67 Ga0307415_101165237 3300032126 Unclassified 725
68 Ga0373941_0161882 3300035115 Bacteria 828
69 Ga0373927_0009605 3300035695 Bacteria 6488
70 Ga0373925_0616007 3300037068 Bacteria 894
71 Ga0439453_0000083 3300041408 Bacteria 7170
72 Ga0439435_0002519 3300042436 Bacteria 3659
73 Ga0439460_0086714 3300042461 Bacteria 990
74 Ga0450918_077935 3300042531 Unclassified 629
75 Ga0451576_0279458 3300045051 Bacteria 1746
76 Ga0451576_0970650 3300045051 Bacteria 891
77 Ga0495582_0597372 3300046473 Bacteria 638
78 Ga0495630_0264484 3300046517 Bacteria 1314
79 Ga0495658_0106341 3300046683 Bacteria 1682
80 Ga0495613_0658629 3300046689 Bacteria 692
81 Ga0495589_0100768 3300046794 Bacteria 1398
82 Ga0496104_0343738 3300048907 Bacteria 1405
83 Ga0496106_0063544 3300048909 Bacteria 2806
84 Ga0496108_0284550 3300048911 Bacteria 1439
85 Ga0496110_0644160 3300048913 Bacteria 959
86 Ga0496112_1111698 3300048915 Unclassified 708
87 Ga0501034_0001798 3300049571 Bacteria 27384
88 Ga0501034_0517208 3300049571 Bacteria 1106
89 Ga0501036_0548836 3300049572 Bacteria 960
90 Ga0501036_0734831 3300049572 Unclassified 815
91 Ga0501039_0036167 3300049575 Bacteria 3810
92 Ga0501039_0392245 3300049575 Unclassified 1090
93 Ga0501040_0095252 3300049576 Bacteria 2072
94 Ga0501040_0123172 3300049576 Bacteria 1820
95 Ga0501041_0152758 3300049577 Bacteria 1442
96 Ga0501042_0128146 3300049578 Bacteria 1828
97 Ga0501042_0671060 3300049578 Bacteria 754
98 Ga0501043_0016627 3300049579 Bacteria 5767
99 Ga0501046_0207002 3300049580 Bacteria 1458
100 Ga0501046_0765380 3300049580 Bacteria 678
101 Ga0501048_0119707 3300049582 Bacteria 1860
102 Ga0501067_0257361 3300049583 Unclassified 972
103 Ga0501070_0930670 3300049586 Bacteria 677
104 Ga0501071_0036091 3300049587 Bacteria 3525
105 Ga0501071_0253322 3300049587 Bacteria 1329
106 Ga0501071_0257968 3300049587 Bacteria 1316
107 Ga0501071_0342031 3300049587 Bacteria 1138
108 Ga0501072_0008141 3300049588 Bacteria 7957
109 Ga0501072_0392404 3300049588 Bacteria 1101
110 Ga0501075_0176152 3300049591 Bacteria 1632
111 Ga0501075_0459756 3300049591 Bacteria 971
112 Ga0501075_0526988 3300049591 Unclassified 902
113 Ga0501076_0012459 3300049592 Bacteria 6359
114 Ga0501076_0102388 3300049592 Bacteria 2309
115 Ga0501076_0275035 3300049592 Bacteria 1379
116 Ga0501076_0455592 3300049592 Unclassified 1053
117 Ga0501077_0122676 3300049593 Bacteria 1647
118 Ga0501079_0019966 3300049741 Bacteria 5120
119 Ga0501079_0086122 3300049741 Bacteria 2432
120 Ga0501079_1265363 3300049741 Bacteria 581
121 Ga0501080_0054904 3300049742 Bacteria 3710
122 Ga0501080_0209046 3300049742 Bacteria 1789
123 Ga0501081_0094707 3300049743 Bacteria 2104
124 Ga0501081_0295408 3300049743 Bacteria 1188
125 Ga0501081_0370152 3300049743 Bacteria 1058
126 Ga0501083_0033651 3300049744 Bacteria 3508
127 Ga0501083_0189966 3300049744 Bacteria 1340
128 Ga0501035_0651624 3300049822 Bacteria 854
129 Ga0501035_0796602 3300049822 Bacteria 755
130 Ga0501044_0132958 3300049823 Bacteria 2481
131 Ga0501045_0160375 3300049824 Bacteria 1674
132 Ga0501045_0210634 3300049824 Bacteria 1448
133 Ga0501045_0275979 3300049824 Bacteria 1251
134 nmdc:mga06z11_142860_c1 3300050494 Bacteria 1354
135 nmdc:mga05p37_25181_c1 3300050507 Bacteria 7236
136 nmdc:mga0qj67_447600_c1 3300050509 Bacteria 1040
137 nmdc:mga06r32_29180_c1 3300050510 Bacteria 5167
138 nmdc:mga06r32_3558_c1 3300050510 Bacteria 13915
139 nmdc:mga08y16_372597_c1 3300050511 Bacteria 1464
140 Ga0500646_0268206 3300053090 Bacteria 605
141 Ga0500651_0017468 3300053093 Bacteria 4427
142 Ga0500593_001328 3300053117 Bacteria 8915
143 Ga0500595_011717 3300053119 Bacteria 3417
144 Ga0500652_004576 3300053131 Bacteria 4289
145 Ga0500616_0066540 3300053153 Bacteria 1850
146 Ga0500645_000458 3300053730 Bacteria 27970
147 Ga0501084_0002631 3300054114 Bacteria 14464
148 Ga0501084_0129422 3300054114 Bacteria 2125
149 Ga0501084_0129810 3300054114 Bacteria 2122
150 Ga0501084_0205918 3300054114 Bacteria 1660
151 Ga0501084_0626169 3300054114 Bacteria 909
152 Ga0501084_1403134 3300054114 Unclassified 585
153 Ga0590071_046549 3300059421 Bacteria 1048
154 Ga0501082_0033672 3300060353 Bacteria 4419
155 Ga0501082_0194366 3300060353 Bacteria 1765
156 Ga0530510_0039393 3300061734 Bacteria 3411
157 Ga0530510_0044584 3300061734 Bacteria 3205
158 Ga0530510_0045657 3300061734 Bacteria 3165
159 Ga0530510_0600859 3300061734 Bacteria 837
160 Ga0530510_0638055 3300061734 Bacteria 811
161 2828306116 2828305725 Bacteria 4916900
162 Ga0081540_1014237
163 MBSR1b_contig_8405598
164 JGI25404J52841_10002017
165 JGI25405J52794_10003797
166 Ga0065715_10113721
167 Ga0065715_10138513
168 Ga0065715_10395470
169 Ga0070690_100009646
170 Ga0070690_101113461
171 Ga0070660_100278393
172 Ga0070662_100667389
173 Ga0070672_100622680
174 Ga0070693_100320046
175 Ga0081455_10000031
176 Ga0081455_10000217
177 Ga0081455_10054473
178 Ga0081455_10577572
179 Ga0081538_10151723
180 Ga0081538_10154222
181 Ga0081540_1000011
182 Ga0081540_1053673
183 Ga0075367_10105475
184 Ga0075370_10129824
185 Ga0075428_100105492
186 Ga0075428_100416254
187 Ga0075430_100308881
188 Ga0075431_100767856
189 Ga0075429_100001619
190 Ga0075429_100784214
191 Ga0068865_100213427
192 Ga0105245_11425297
193 Ga0114129_10002688
194 Ga0114129_10271616
195 Ga0105243_10257929
196 Ga0105242_10390343
197 Ga0105249_10135192
198 Ga0105239_10446544
199 Ga0157374_11633393
200 Ga0157378_10581142
201 Ga0157378_10700055
202 Ga0163162_10703305
203 Ga0157375_11171996
204 Ga0157380_10519699
205 Ga0157376_11258333
206 Ga0163161_10309190
207 Ga0207657_10093261
208 Ga0207706_10168935
209 Ga0207709_10292890
210 Ga0207691_10001066
211 Ga0207678_10368695
212 Ga0207674_10100621
213 Ga0209967_1000200
214 Ga0210000_1000298
215 Ga0209995_1000380
216 Ga0209999_1000433
217 Ga0209970_1005501
218 Ga0210002_1034353
219 Ga0209983_1004909
220 Ga0209971_1002288
221 Ga0209971_1079446
222 Ga0209966_1021169
223 Ga0209974_10007667
224 Ga0209974_10051656
225 Ga0307405_11301494
226 Ga0307413_10339548
227 Ga0307409_100149143
228 Ga0307415_101165237
229 Ga0373941_0161882
230 Ga0373927_0009605
231 Ga0373925_0616007
232 Ga0439453_0000083
233 Ga0439435_0002519
234 Ga0439460_0086714
235 Ga0450918_077935
236 Ga0451576_0279458
237 Ga0451576_0970650
238 Ga0495582_0597372
239 Ga0495630_0264484
240 Ga0495658_0106341
241 Ga0495613_0658629
242 Ga0495589_0100768
243 Ga0496104_0343738
244 Ga0496106_0063544
245 Ga0496108_0284550
246 Ga0496110_0644160
247 Ga0496112_1111698
248 Ga0501034_0001798
249 Ga0501034_0517208
250 Ga0501036_0548836
251 Ga0501036_0734831
252 Ga0501039_0036167
253 Ga0501039_0392245
254 Ga0501040_0095252
255 Ga0501040_0123172
256 Ga0501041_0152758
257 Ga0501042_0128146
258 Ga0501042_0671060
259 Ga0501043_0016627
260 Ga0501046_0207002
261 Ga0501046_0765380
262 Ga0501048_0119707
263 Ga0501067_0257361
264 Ga0501070_0930670
265 Ga0501071_0036091
266 Ga0501071_0253322
267 Ga0501071_0257968
268 Ga0501071_0342031
269 Ga0501072_0008141
270 Ga0501072_0392404
271 Ga0501075_0176152
272 Ga0501075_0459756
273 Ga0501075_0526988
274 Ga0501076_0012459
275 Ga0501076_0102388
276 Ga0501076_0275035
277 Ga0501076_0455592
278 Ga0501077_0122676
279 Ga0501079_0019966
280 Ga0501079_0086122
281 Ga0501079_1265363
282 Ga0501080_0054904
283 Ga0501080_0209046
284 Ga0501081_0094707
285 Ga0501081_0295408
286 Ga0501081_0370152
287 Ga0501083_0033651
288 Ga0501083_0189966
289 Ga0501035_0651624
290 Ga0501035_0796602
291 Ga0501044_0132958
292 Ga0501045_0160375
293 Ga0501045_0210634
294 Ga0501045_0275979
295 nmdc:mga06z11_142860_c1
296 nmdc:mga05p37_25181_c1
297 nmdc:mga0qj67_447600_c1
298 nmdc:mga06r32_29180_c1
299 nmdc:mga06r32_3558_c1
300 nmdc:mga08y16_372597_c1
301 Ga0500646_0268206
302 Ga0500651_0017468
303 Ga0500593_001328
304 Ga0500595_011717
305 Ga0500652_004576
306 Ga0500616_0066540
307 Ga0500645_000458
308 Ga0501084_0002631
309 Ga0501084_0129422
310 Ga0501084_0129810
311 Ga0501084_0205918
312 Ga0501084_0626169
313 Ga0501084_1403134
314 Ga0590071_046549
315 Ga0501082_0033672
316 Ga0501082_0194366
317 Ga0530510_0039393
318 Ga0530510_0044584
319 Ga0530510_0045657
320 Ga0530510_0600859
321 Ga0530510_0638055
322 2828306116

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04290

DctQ

Tripartite ATP-independent periplasmic transporters, DctQ component

29

152

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7qha-assembly1.cif.gz_A cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in amphipol 0.8191 15 164
7qha-assembly1.cif.gz_A cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in amphipol 0.7814 15 164
8thj-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from haemophilus influenzae (antiparallel dimer) 0.6856 15 153
8thj-assembly1.cif.gz_B cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from haemophilus influenzae (antiparallel dimer) 0.5778 15 153
8oyv-assembly1.cif.gz_A de novo designed claudin fold clf_4 0.545 52 162
ID Description Score Start End Superfamily
af_P37674_16_146_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.7939 29 161 1.20.120.550
af_P37674_16_146_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.7788 29 161 1.20.120.550
af_A0A2R8S075_1_113_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.6379 54 165 1.20.1070.10
af_Q08CJ8_1_248_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.5999 54 165 1.20.140.150
af_A0A2R8S075_1_113_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.5596 54 165 1.20.1070.10
ID Description Score Start End GO Terms
AF-A0A1I0X6F0-F1-model_v4 TRAP transporter small permease protein 0.9589 3 165 GO:0005886
GO:0022857
AF-A0A3N5WL97-F1-model_v4 TRAP transporter small permease protein 0.9523 1 165 GO:0005886
GO:0022857
AF-A0A8A7VD23-F1-model_v4 deleted 0.9507 2 165
AF-A0A6L5FPS6-F1-model_v4 TRAP transporter small permease protein 0.9498 2 166 GO:0005886
GO:0022857
AF-A0A1G3IQS9-F1-model_v4 TRAP transporter small permease protein 0.9491 3 164 GO:0005886
GO:0022857

Map