F235665

General Info

Members Datasets Scaffolds Average Seq Length
160 100 320 335

Family's Representative Sequence

Representative Sequence 3300050507|nmdc:mga05p37_81895_c1|nmdc:mga05p37_81895_c1_106_1266
Length 386
Sequence MRLEIRDFERDQEDEVGHSGKQANPRTGPIPFRPSRCHEWYANEQDVRREVSMEDVALTRARAGDADAFRELTDPFRRELQLHCYRILGSVQDAEDGVQETLLAAWRGLEQFEGRASVRAWLYRIATHRCLNVLRGRRRRPREVPAMVEPPEPTRRSEPIWLEPYPDTLLDDLADSAPGPHARYEMRETVGLAFVTALQHLPPRQRAVLVLRDALGFSGAEVASMLDTSEAAVKGALQRARATLDELVSAGELEGAPTPGSRRERELVGRFAAAYERGDVDAVVSLLTDDAWVRMPPQPYEYQGHTAIAALLRERAIRRGVPVRLVPTRANGQPAFGVYLPDAQAAISHAYSLIVLTLEGDRIAVMTWFGDLSVFPHFGLPRVLSG

Samples

Sample ID Description Type Environment
1 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
27 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
36 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
53 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
54 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
55 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
56 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
57 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
62 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
63 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
64 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
65 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
68 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
69 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
70 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
71 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
72 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
73 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
74 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
75 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
76 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
77 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
78 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
79 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
80 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
81 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
84 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
96 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
97 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
98 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
99 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
100 2895427314 Nonomuraea sp. PA05 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.38
Metatranscriptomes 0
Isolates 0.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 13.12
Rhizosphere 85.62
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga05p37_81895_c1 3300050507 Bacteria 3976
2 JGI25407J50210_10005875 3300003373 Bacteria 3035
3 JGI25407J50210_10013476 3300003373 Bacteria 2102
4 JGI25407J50210_10016214 3300003373 Bacteria 1929
5 JGI25407J50210_10017015 3300003373 Bacteria 1886
6 Ga0070683_100115966 3300005329 Bacteria 2529
7 Ga0070682_100038815 3300005337 Bacteria 2923
8 Ga0068868_100041453 3300005338 Bacteria 3587
9 Ga0070714_100170504 3300005435 Bacteria 1975
10 Ga0070711_100057818 3300005439 Bacteria 2687
11 Ga0070663_100307536 3300005455 Bacteria 1271
12 Ga0070678_100024061 3300005456 Bacteria 4070
13 Ga0070698_100002742 3300005471 Bacteria 19361
14 Ga0070684_100002790 3300005535 Bacteria 12943
15 Ga0070684_100059358 3300005535 Bacteria 3344
16 Ga0070686_100079198 3300005544 Bacteria 2172
17 Ga0070665_100020084 3300005548 Bacteria 6707
18 Ga0068854_100097818 3300005578 Bacteria 2195
19 Ga0068856_100150309 3300005614 Bacteria 2338
20 Ga0068864_100165681 3300005618 Bacteria 2012
21 Ga0081455_10007009 3300005937 Bacteria 11976
22 Ga0081455_10016880 3300005937 Bacteria 7020
23 Ga0081455_10048103 3300005937 Bacteria 3688
24 Ga0081455_10049507 3300005937 Bacteria 3622
25 Ga0081538_10000210 3300005981 Bacteria 65100
26 Ga0081538_10000690 3300005981 Bacteria 37077
27 Ga0081538_10001372 3300005981 Bacteria 25077
28 Ga0081538_10005558 3300005981 Bacteria 11312
29 Ga0081538_10007291 3300005981 Bacteria 9583
30 Ga0081538_10009497 3300005981 Bacteria 8110
31 Ga0081538_10015143 3300005981 Bacteria 5988
32 Ga0081538_10080201 3300005981 Bacteria 1742
33 Ga0081539_10012053 3300005985 Bacteria 6724
34 Ga0070717_10117641 3300006028 Bacteria 2273
35 Ga0070712_100045105 3300006175 Bacteria 3042
36 Ga0070712_100218071 3300006175 Bacteria 1509
37 Ga0075428_100037198 3300006844 Bacteria 5359
38 Ga0075431_100248323 3300006847 Bacteria 1808
39 Ga0105245_10015406 3300009098 Bacteria 6665
40 Ga0105245_10016761 3300009098 Bacteria 6398
41 Ga0114129_10001814 3300009147 Bacteria 29120
42 Ga0105243_10077675 3300009148 Bacteria 2701
43 Ga0105242_10000109 3300009176 Bacteria 59443
44 Ga0105248_10073072 3300009177 Bacteria 3854
45 Ga0105237_10165059 3300009545 Bacteria 2213
46 Ga0105246_10047627 3300011119 Bacteria 2928
47 Ga0157372_10101732 3300013307 Bacteria 3281
48 Ga0157375_10258296 3300013308 Bacteria 1903
49 Ga0163163_10024545 3300014325 Bacteria 5738
50 Ga0157380_10105873 3300014326 Bacteria 2352
51 Ga0157377_10034804 3300014745 Bacteria 2758
52 Ga0207699_10157103 3300025906 Bacteria 1510
53 Ga0207693_10019746 3300025915 Bacteria 5357
54 Ga0207693_10021896 3300025915 Bacteria 5082
55 Ga0207686_10000124 3300025934 Bacteria 62335
56 Ga0207709_10093494 3300025935 Bacteria 1971
57 Ga0207704_10220405 3300025938 Bacteria 1403
58 Ga0207711_10455170 3300025941 Bacteria 1191
59 Ga0207661_10182088 3300025944 Bacteria 1836
60 Ga0207679_10059157 3300025945 Bacteria 2842
61 Ga0207677_10055796 3300026023 Bacteria 2703
62 Ga0207678_10096550 3300026067 Bacteria 2526
63 Ga0207708_10000702 3300026075 Bacteria 25364
64 Ga0207676_10212224 3300026095 Bacteria 1718
65 Ga0207676_10212331 3300026095 Bacteria 1718
66 Ga0207683_10025624 3300026121 Bacteria 5088
67 Ga0207683_10169172 3300026121 Bacteria 1979
68 Ga0207698_10054273 3300026142 Bacteria 3082
69 Ga0268266_10194751 3300028379 Bacteria 1852
70 Ga0268265_10200303 3300028380 Bacteria 1732
71 Ga0307515_10133082 3300028794 Bacteria 2723
72 Ga0307413_10105450 3300031824 Bacteria 1874
73 Ga0395899_0018283 3300037312 Bacteria 5330
74 Ga0395899_0063964 3300037312 Bacteria 2705
75 Ga0395899_0145103 3300037312 Bacteria 1686
76 Ga0395900_0016402 3300037418 Bacteria 7552
77 Ga0395900_0016891 3300037418 Bacteria 7450
78 Ga0395900_0033523 3300037418 Bacteria 5284
79 Ga0395900_0038753 3300037418 Bacteria 4913
80 Ga0395900_0219037 3300037418 Bacteria 1919
81 Ga0395898_0019566 3300037466 Bacteria 6888
82 Ga0395898_0042871 3300037466 Bacteria 4462
83 Ga0395898_0051327 3300037466 Bacteria 4033
84 Ga0395898_0087856 3300037466 Bacteria 2994
85 Ga0395898_0097205 3300037466 Bacteria 2828
86 Ga0395898_0167482 3300037466 Bacteria 2101
87 Ga0395898_0290142 3300037466 Bacteria 1561
88 Ga0395905_0059039 3300037471 Bacteria 3586
89 Ga0395905_0108533 3300037471 Bacteria 2605
90 Ga0395905_0128519 3300037471 Bacteria 2383
91 Ga0395905_0448346 3300037471 Bacteria 1188
92 Ga0395901_0006943 3300038443 Bacteria 11438
93 Ga0395901_0027076 3300038443 Bacteria 5889
94 Ga0395901_0028048 3300038443 Bacteria 5790
95 Ga0395901_0059464 3300038443 Bacteria 3976
96 Ga0395901_0061571 3300038443 Bacteria 3905
97 Ga0395901_0108341 3300038443 Bacteria 2916
98 Ga0395901_0120357 3300038443 Bacteria 2759
99 Ga0395901_0199429 3300038443 Bacteria 2098
100 Ga0395901_0257067 3300038443 Bacteria 1818
101 Ga0395901_0289536 3300038443 Bacteria 1700
102 Ga0466966_0228954 3300044684 Bacteria 1122
103 Ga0466961_0012478 3300044693 Bacteria 5437
104 Ga0466963_0016074 3300044694 Bacteria 4648
105 Ga0466963_0020711 3300044694 Bacteria 4139
106 Ga0466963_0131366 3300044694 Bacteria 1730
107 Ga0466971_0003304 3300044719 Bacteria 6888
108 Ga0466971_0112992 3300044719 Bacteria 1254
109 Ga0466957_0073039 3300044842 Bacteria 2125
110 Ga0466959_0007236 3300045049 Bacteria 7774
111 Ga0466959_0009925 3300045049 Bacteria 6788
112 Ga0466958_0009977 3300045836 Bacteria 5305
113 Ga0466958_0147047 3300045836 Bacteria 1485
114 Ga0466967_0002037 3300045976 Bacteria 12332
115 Ga0466967_0017261 3300045976 Bacteria 5723
116 Ga0466967_0561402 3300045976 Bacteria 1124
117 Ga0495618_0255634 3300046514 Bacteria 1098
118 Ga0495586_0153514 3300046535 Bacteria 1296
119 Ga0495657_0140319 3300046675 Bacteria 1507
120 Ga0495658_0119641 3300046683 Bacteria 1592
121 Ga0496101_0010305 3300048904 Bacteria 6172
122 Ga0496102_0007633 3300048905 Bacteria 9244
123 Ga0496102_0019654 3300048905 Bacteria 5952
124 Ga0496103_0090122 3300048906 Bacteria 1935
125 Ga0496103_0198861 3300048906 Bacteria 1289
126 Ga0496104_0125914 3300048907 Bacteria 2460
127 Ga0496105_0001876 3300048908 Bacteria 15079
128 Ga0496105_0028249 3300048908 Bacteria 4588
129 Ga0496106_0063991 3300048909 Bacteria 2797
130 Ga0496106_0086758 3300048909 Bacteria 2411
131 Ga0496107_0085796 3300048910 Bacteria 2297
132 Ga0496108_0022988 3300048911 Bacteria 5129
133 Ga0496109_0011426 3300048912 Bacteria 7632
134 Ga0496109_0079481 3300048912 Bacteria 3021
135 Ga0496110_0005824 3300048913 Bacteria 9684
136 Ga0496110_0051886 3300048913 Bacteria 3604
137 Ga0496111_0082405 3300048914 Bacteria 2349
138 Ga0496112_0079244 3300048915 Bacteria 3249
139 Ga0496112_0260768 3300048915 Bacteria 1682
140 Ga0496113_0116441 3300048916 Bacteria 2085
141 Ga0496114_0068582 3300048917 Bacteria 2977
142 Ga0501031_0087707 3300049568 Bacteria 2029
143 Ga0501038_0308490 3300049574 Bacteria 1240
144 Ga0501040_0081730 3300049576 Bacteria 2239
145 Ga0501041_0037085 3300049577 Bacteria 2953
146 Ga0501068_0070746 3300049584 Bacteria 2129
147 Ga0501072_0541886 3300049588 Bacteria 919
148 Ga0501074_0022011 3300049590 Bacteria 4631
149 Ga0501076_0030705 3300049592 Bacteria 4186
150 Ga0501076_0115289 3300049592 Bacteria 2174
151 Ga0501080_0415884 3300049742 Bacteria 1208
152 Ga0501081_0142695 3300049743 Bacteria 1717
153 Ga0501045_0043064 3300049824 Bacteria 3287
154 Ga0495655_0000005 3300053083 Bacteria 257472
155 Ga0501084_0069583 3300054114 Bacteria 2946
156 Ga0501084_0128249 3300054114 Bacteria 2135
157 Ga0466962_0001997 3300061719 Bacteria 9634
158 Ga0530510_0014761 3300061734 Bacteria 5515
159 Ga0530510_0356972 3300061734 Bacteria 1098
160 2895435760 2895427314 Bacteria 13147766
161 nmdc:mga05p37_81895_c1
162 JGI25407J50210_10005875
163 JGI25407J50210_10013476
164 JGI25407J50210_10016214
165 JGI25407J50210_10017015
166 Ga0070683_100115966
167 Ga0070682_100038815
168 Ga0068868_100041453
169 Ga0070714_100170504
170 Ga0070711_100057818
171 Ga0070663_100307536
172 Ga0070678_100024061
173 Ga0070698_100002742
174 Ga0070684_100002790
175 Ga0070684_100059358
176 Ga0070686_100079198
177 Ga0070665_100020084
178 Ga0068854_100097818
179 Ga0068856_100150309
180 Ga0068864_100165681
181 Ga0081455_10007009
182 Ga0081455_10016880
183 Ga0081455_10048103
184 Ga0081455_10049507
185 Ga0081538_10000210
186 Ga0081538_10000690
187 Ga0081538_10001372
188 Ga0081538_10005558
189 Ga0081538_10007291
190 Ga0081538_10009497
191 Ga0081538_10015143
192 Ga0081538_10080201
193 Ga0081539_10012053
194 Ga0070717_10117641
195 Ga0070712_100045105
196 Ga0070712_100218071
197 Ga0075428_100037198
198 Ga0075431_100248323
199 Ga0105245_10015406
200 Ga0105245_10016761
201 Ga0114129_10001814
202 Ga0105243_10077675
203 Ga0105242_10000109
204 Ga0105248_10073072
205 Ga0105237_10165059
206 Ga0105246_10047627
207 Ga0157372_10101732
208 Ga0157375_10258296
209 Ga0163163_10024545
210 Ga0157380_10105873
211 Ga0157377_10034804
212 Ga0207699_10157103
213 Ga0207693_10019746
214 Ga0207693_10021896
215 Ga0207686_10000124
216 Ga0207709_10093494
217 Ga0207704_10220405
218 Ga0207711_10455170
219 Ga0207661_10182088
220 Ga0207679_10059157
221 Ga0207677_10055796
222 Ga0207678_10096550
223 Ga0207708_10000702
224 Ga0207676_10212224
225 Ga0207676_10212331
226 Ga0207683_10025624
227 Ga0207683_10169172
228 Ga0207698_10054273
229 Ga0268266_10194751
230 Ga0268265_10200303
231 Ga0307515_10133082
232 Ga0307413_10105450
233 Ga0395899_0018283
234 Ga0395899_0063964
235 Ga0395899_0145103
236 Ga0395900_0016402
237 Ga0395900_0016891
238 Ga0395900_0033523
239 Ga0395900_0038753
240 Ga0395900_0219037
241 Ga0395898_0019566
242 Ga0395898_0042871
243 Ga0395898_0051327
244 Ga0395898_0087856
245 Ga0395898_0097205
246 Ga0395898_0167482
247 Ga0395898_0290142
248 Ga0395905_0059039
249 Ga0395905_0108533
250 Ga0395905_0128519
251 Ga0395905_0448346
252 Ga0395901_0006943
253 Ga0395901_0027076
254 Ga0395901_0028048
255 Ga0395901_0059464
256 Ga0395901_0061571
257 Ga0395901_0108341
258 Ga0395901_0120357
259 Ga0395901_0199429
260 Ga0395901_0257067
261 Ga0395901_0289536
262 Ga0466966_0228954
263 Ga0466961_0012478
264 Ga0466963_0016074
265 Ga0466963_0020711
266 Ga0466963_0131366
267 Ga0466971_0003304
268 Ga0466971_0112992
269 Ga0466957_0073039
270 Ga0466959_0007236
271 Ga0466959_0009925
272 Ga0466958_0009977
273 Ga0466958_0147047
274 Ga0466967_0002037
275 Ga0466967_0017261
276 Ga0466967_0561402
277 Ga0495618_0255634
278 Ga0495586_0153514
279 Ga0495657_0140319
280 Ga0495658_0119641
281 Ga0496101_0010305
282 Ga0496102_0007633
283 Ga0496102_0019654
284 Ga0496103_0090122
285 Ga0496103_0198861
286 Ga0496104_0125914
287 Ga0496105_0001876
288 Ga0496105_0028249
289 Ga0496106_0063991
290 Ga0496106_0086758
291 Ga0496107_0085796
292 Ga0496108_0022988
293 Ga0496109_0011426
294 Ga0496109_0079481
295 Ga0496110_0005824
296 Ga0496110_0051886
297 Ga0496111_0082405
298 Ga0496112_0079244
299 Ga0496112_0260768
300 Ga0496113_0116441
301 Ga0496114_0068582
302 Ga0501031_0087707
303 Ga0501038_0308490
304 Ga0501040_0081730
305 Ga0501041_0037085
306 Ga0501068_0070746
307 Ga0501072_0541886
308 Ga0501074_0022011
309 Ga0501076_0030705
310 Ga0501076_0115289
311 Ga0501080_0415884
312 Ga0501081_0142695
313 Ga0501045_0043064
314 Ga0495655_0000005
315 Ga0501084_0069583
316 Ga0501084_0128249
317 Ga0466962_0001997
318 Ga0530510_0014761
319 Ga0530510_0356972
320 2895435760

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

191

244

0.96

PF04545

Sigma70_r4

Sigma-70, region 4

197

246

0.94

PF04542

Sigma70_r2

Sigma-70 region 2

72

140

0.93

PF13577

SnoaL_4

SnoaL-like domain

262

376

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bhy-assembly2.cif.gz_C-2 dna-binding domain of deor in complex with the dna operator 0.9876 157 195
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9773 147 199
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9412 144 199
4lup-assembly2.cif.gz_C crystal structure of the complex formed by region of e. coli sigmae bound to its -10 element non template strand 0.9328 8 92
6jhe-assembly1.cif.gz_A crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna 0.9254 154 202
ID Description Score Start End Superfamily
3kloB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9469 149 197 1.10.10.10
2o8xC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9468 145 197 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9457 145 199 1.10.10.10
4go1A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9439 157 197 1.10.10.10
4go1B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9397 156 195 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A840IV83-F1-model_v4 NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) 0.9585 214 330 GO:0016491
AF-A0A654TTE5-F1-model_v4 RNA polymerase sigma factor 0.9204 210 336
AF-A0A654TTE5-F1-model_v4 RNA polymerase sigma factor 0.9068 210 336
AF-A0A1I6AWE8-F1-model_v4 RNA polymerase sigma factor 0.8855 9 334 GO:0003677
GO:0006352
GO:0006950
GO:0016987
AF-A0A7Y4WHR6-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.8779 1 102 GO:0006352
GO:0016987

Map