F235607

General Info

Members Datasets Scaffolds Average Seq Length
160 120 142 593

Family's Representative Sequence

Representative Sequence 3300049583|Ga0501067_0000058|Ga0501067_0000058_53987_55954
Length 655
Sequence MVTHEAASIAAASAMPIPALIALSRILRDDAWRMVEPFTRPRPGIGPEMIVHRQIAGAAPAAFLFLGAVFMANAQTPHLDPQIFLPPAPAWSGASEKLIAPAKDPWITPSEKTGLTATPTYDETIAWLKKVDKQSSLIRMEAIGTTPQGRKLYTVIISKDGATLQPSKPVFLVQAGIHSGEIDGKDAMLMLIRDICFRGRDALIDKVNIVFIPVLNADGHERSSPYSRPNQRGPVNMGWRNTAQNLNLNRDYMKADAPEMQALLGVIRKYDPDFYIDLHVTDGMDYQYDVTYWFDGWDGLYADSPSIGKWLNEVYRPKADAALKAAGHIPGPMIFMRDEADVSKGTDFSAFAPRFSHAYGDLRRLPSVLVENHSLKPYRQRVLGTYVLLESTLKTLASEAKSLKAATETDRALRPATVNANWKGKDQPVGTLAFPTIQGEQAESVATGTKVMRWNGKPGPVVNIPIYASEPGLQLSVPKAYWVPSTKSEVIARMKAHGIAFETIKKAQMVDVDMIRFGGFKAGAPSEGRVSVTPTGVSHSTRKVTFPPGSARVSTDQPLGALAAYLLEPESEDSFFAWGFFSEILQRVEYMEPYAIAPMAEQMLATDPALEAEFEKRLKDDKDFAASPLRRLQFFYERSPFYDDRYLLYPVGREL

Samples

Sample ID Description Type Environment
1 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
2 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
3 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
4 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
5 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
6 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
7 2643221583 Caulobacter sp. Root655 Isolate Unclassified
8 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
9 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
10 2818991435 Caulobacter henricii 536 Isolate Unclassified
11 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
12 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
13 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
14 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
15 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
16 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
17 2919688452 Pararheinheimera soli 4138 Isolate Unclassified
18 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
19 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
20 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
21 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
22 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
23 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
24 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
25 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
26 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
45 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
56 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
57 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
60 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
61 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
62 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
63 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
68 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
69 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
70 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
71 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
72 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
73 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
74 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
75 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
76 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
77 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
78 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
79 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
80 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
81 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
82 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
83 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
84 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
85 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
86 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
87 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
88 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
89 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
90 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
91 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
92 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
104 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
105 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
106 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
109 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
112 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
113 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
114 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
115 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
116 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
117 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
118 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
119 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
120 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.75
Metatranscriptomes 0
Isolates 11.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.75
Nodule 0
Rhizoplane 1.25
Rhizosphere 68.75
Stem 0
Stem Tuber 0
Unclassified 16.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055537_1006721 3300003773 Bacteria 2875
2 Ga0055528_1013630 3300003790 Bacteria 3067
3 Ga0065165_1001205 3300005262 Bacteria 29843
4 Ga0065714_10066375 3300005288 Bacteria 6985
5 Ga0068869_100009342 3300005334 Bacteria 6359
6 Ga0070689_100010596 3300005340 Bacteria 6572
7 Ga0070669_100058711 3300005353 Bacteria 2824
8 Ga0070688_100019420 3300005365 Bacteria 3936
9 Ga0070694_100005131 3300005444 Bacteria 7895
10 Ga0070686_100000844 3300005544 Bacteria 17755
11 Ga0070686_100070048 3300005544 Unclassified 2292
12 Ga0070704_100059077 3300005549 Bacteria 2734
13 Ga0068863_100000490 3300005841 Bacteria 40207
14 Ga0068863_100046736 3300005841 Bacteria 4109
15 Ga0097621_100068603 3300006237 Unclassified 2925
16 Ga0068871_100009131 3300006358 Bacteria 7165
17 Ga0075430_100059356 3300006846 Bacteria 3216
18 Ga0075431_100006912 3300006847 Bacteria 11279
19 Ga0075429_100019928 3300006880 Bacteria 5816
20 Ga0105242_10012795 3300009176 Bacteria 6464
21 Ga0105248_10137760 3300009177 Bacteria 2753
22 Ga0105249_10068461 3300009553 Bacteria 3274
23 Ga0157380_10024122 3300014326 Unclassified 4599
24 Ga0157376_10020596 3300014969 Bacteria 5106
25 Ga0209565_1000636 3300025263 Bacteria 22843
26 Ga0209673_1002059 3300025273 Bacteria 15199
27 Ga0209675_1010328 3300025291 Bacteria 3198
28 Ga0209564_1001381 3300025295 Bacteria 25325
29 Ga0209758_1007719 3300025297 Bacteria 7222
30 Ga0209758_1010059 3300025297 Bacteria 5734
31 Ga0209050_1000191 3300025298 Bacteria 138334
32 Ga0209256_1012532 3300025299 Bacteria 3231
33 Ga0209257_1000427 3300025304 Bacteria 81007
34 Ga0207682_10016967 3300025893 Bacteria 2843
35 Ga0207686_10001134 3300025934 Bacteria 15368
36 Ga0207691_10059801 3300025940 Bacteria 3463
37 Ga0207689_10009266 3300025942 Bacteria 8512
38 Ga0207689_10011015 3300025942 Bacteria 7771
39 Ga0207641_10000088 3300026088 Bacteria 131959
40 Ga0207641_10031416 3300026088 Bacteria 4404
41 Ga0207648_10111245 3300026089 Bacteria 2404
42 Ga0207683_10074368 3300026121 Bacteria 3006
43 Ga0265319_1002681 3300028563 Bacteria 9546
44 Ga0307515_10000001 3300028794 Bacteria 4259510
45 Ga0307515_10072896 3300028794 Bacteria 4625
46 Ga0265327_10000032 3300031251 Bacteria 318763
47 Ga0265327_10000967 3300031251 Bacteria 41121
48 Ga0265327_10038415 3300031251 Bacteria 2612
49 Ga0307409_100026519 3300031995 Bacteria 4088
50 Ga0307411_10082460 3300032005 Bacteria 2218
51 Ga0439436_0015761 3300041404 Bacteria 2270
52 Ga0439439_0009926 3300041406 Bacteria 2271
53 Ga0439465_0000454 3300041413 Bacteria 12015
54 Ga0439445_0007650 3300042004 Bacteria 2513
55 Ga0451577_0006320 3300042876 Bacteria 11848
56 Ga0453684_0006460 3300044712 Bacteria 22254
57 Ga0453684_0007680 3300044712 Bacteria 19723
58 Ga0451576_0000052 3300045051 Bacteria 310414
59 Ga0451576_0002800 3300045051 Bacteria 25148
60 Ga0495627_000923 3300046453 Bacteria 20317
61 Ga0495638_0000951 3300046460 Bacteria 29376
62 Ga0495638_0001655 3300046460 Bacteria 19739
63 Ga0495638_0004556 3300046460 Bacteria 10494
64 Ga0495638_0004960 3300046460 Bacteria 9994
65 Ga0495650_0000024 3300046471 Bacteria 496674
66 Ga0495596_0000246 3300046500 Bacteria 36477
67 Ga0495596_0000563 3300046500 Bacteria 23230
68 Ga0495583_0000003 3300046506 Bacteria 709273
69 Ga0495583_0040216 3300046506 Bacteria 2198
70 Ga0495610_0000606 3300046512 Bacteria 35491
71 Ga0495610_0001859 3300046512 Bacteria 18297
72 Ga0495610_0002149 3300046512 Bacteria 16762
73 Ga0495610_0007270 3300046512 Bacteria 7418
74 Ga0495616_0000517 3300046513 Bacteria 29199
75 Ga0495632_0007842 3300046519 Bacteria 6644
76 Ga0495632_0032953 3300046519 Bacteria 2664
77 Ga0495637_0012364 3300046520 Bacteria 4086
78 Ga0495637_0020914 3300046520 Bacteria 3002
79 Ga0495643_0000041 3300046522 Bacteria 231342
80 Ga0495643_0012174 3300046522 Bacteria 5199
81 Ga0495648_0044807 3300046524 Bacteria 2758
82 Ga0495654_0000118 3300046530 Bacteria 88890
83 Ga0495609_0015299 3300046538 Bacteria 3592
84 Ga0495625_0005224 3300046660 Bacteria 11954
85 Ga0495625_0008999 3300046660 Bacteria 8432
86 Ga0495625_0014963 3300046660 Bacteria 6164
87 Ga0495625_0066708 3300046660 Bacteria 2534
88 Ga0495658_0029523 3300046683 Bacteria 2970
89 Ga0495589_0004211 3300046794 Bacteria 7695
90 Ga0495660_0025931 3300046810 Bacteria 3325
91 Ga0495672_0009534 3300047320 Bacteria 7023
92 Ga0495679_004441 3300047446 Bacteria 6469
93 Ga0495673_0000102 3300047469 Bacteria 173343
94 Ga0495673_0007502 3300047469 Bacteria 6257
95 Ga0495686_0000007 3300047472 Bacteria 732622
96 Ga0495686_0003093 3300047472 Bacteria 14707
97 Ga0495686_0016573 3300047472 Bacteria 4995
98 Ga0495615_0000029 3300048090 Bacteria 47153
99 Ga0495626_0000949 3300048091 Bacteria 25204
100 Ga0496107_0000131 3300048910 Bacteria 36633
101 Ga0496115_0004369 3300048918 Bacteria 10233
102 Ga0496116_0000011 3300048919 Bacteria 646953
103 Ga0496121_0002232 3300048924 Bacteria 30222
104 Ga0496121_0011220 3300048924 Bacteria 9984
105 Ga0496122_0000221 3300048925 Bacteria 127004
106 Ga0496122_0000811 3300048925 Bacteria 59974
107 Ga0496122_0022182 3300048925 Bacteria 5654
108 Ga0496123_0000202 3300048926 Bacteria 121753
109 Ga0496123_0000364 3300048926 Bacteria 85356
110 Ga0496124_0000947 3300048927 Bacteria 46447
111 Ga0496124_0001581 3300048927 Bacteria 32886
112 Ga0496124_0031595 3300048927 Bacteria 4686
113 Ga0496125_0007123 3300048928 Bacteria 11935
114 Ga0496126_0000167 3300048929 Bacteria 152392
115 Ga0501032_0001847 3300049569 Bacteria 16751
116 Ga0501034_0075159 3300049571 Bacteria 3386
117 Ga0501038_0024829 3300049574 Bacteria 5343
118 Ga0501047_0000370 3300049581 Bacteria 50827
119 Ga0501047_0005337 3300049581 Bacteria 12081
120 Ga0501047_0023908 3300049581 Bacteria 5867
121 Ga0501067_0000058 3300049583 Bacteria 64397
122 Ga0501073_0000154 3300049589 Bacteria 45306
123 Ga0501073_0007104 3300049589 Bacteria 8337
124 Ga0501077_0000148 3300049593 Bacteria 38929
125 Ga0501238_000473 3300049671 Bacteria 4615
126 Ga0501080_0007176 3300049742 Bacteria 10057
127 Ga0501080_0009035 3300049742 Bacteria 9070
128 Ga0501080_0055828 3300049742 Bacteria 3678
129 Ga0501083_0007748 3300049744 Bacteria 7607
130 Ga0501083_0040341 3300049744 Bacteria 3169
131 nmdc:mga09592_31153_c1 3300050508 Bacteria 4442
132 nmdc:mga0qj67_92445_c1 3300050509 Bacteria 2432
133 Ga0500554_004074 3300053102 Bacteria 3059
134 Ga0500556_0001460 3300053104 Bacteria 9956
135 Ga0500618_000206 3300053125 Bacteria 46857
136 Ga0500658_0023100 3300053134 Bacteria 2371
137 Ga0500559_0000212 3300053136 Bacteria 46705
138 Ga0500559_0007326 3300053136 Bacteria 4897
139 Ga0500622_0055752 3300053156 Bacteria 2024
140 Ga0500627_0006586 3300053158 Bacteria 3970
141 Ga0500645_001275 3300053730 Bacteria 13182
142 Ga0500661_000069 3300055283 Bacteria 15938

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300014326 Ga0157380_10024122 Ga0157380_100241224 505
2 3300046500 Ga0495596_0000246 Ga0495596_0000246_16336_18171 536
3 3300046506 Ga0495583_0040216 Ga0495583_0040216_276_2072 536
4 3300046522 Ga0495643_0012174 Ga0495643_0012174_2512_4308 536
5 3300046538 Ga0495609_0015299 Ga0495609_0015299_721_2517 536
6 3300053134 Ga0500658_0023100 Ga0500658_0023100_48_1664 538
7 3300009177 Ga0105248_10137760 Ga0105248_101377602 544
8 3300025942 Ga0207689_10009266 Ga0207689_100092665 550
9 3300048090 Ga0495615_0000029 Ga0495615_0000029_345_2132 551
10 3300048925 Ga0496122_0000811 Ga0496122_0000811_15513_17300 551
11 3300048926 Ga0496123_0000364 Ga0496123_0000364_47125_48912 551
12 3300048927 Ga0496124_0031595 Ga0496124_0031595_1696_3483 551
13 3300048927 Ga0496124_0001581 Ga0496124_0001581_3068_4888 553
14 3300048928 Ga0496125_0007123 Ga0496125_0007123_5943_7763 553
15 3300046500 Ga0495596_0000563 Ga0495596_0000563_15376_17184 555
16 3300046512 Ga0495610_0001859 Ga0495610_0001859_10196_12004 555
17 3300055283 Ga0500661_000069 Ga0500661_000069_12909_14669 557
18 3300005841 Ga0068863_100000490 Ga0068863_10000049025 558
19 3300026088 Ga0207641_10000088 Ga0207641_1000008889 558
20 3300026089 Ga0207648_10111245 Ga0207648_101112452 558
21 3300041413 Ga0439465_0000454 Ga0439465_0000454_5458_7251 558
22 3300005353 Ga0070669_100058711 Ga0070669_1000587112 560
23 3300005444 Ga0070694_100005131 Ga0070694_1000051316 560
24 3300005544 Ga0070686_100070048 Ga0070686_1000700481 560
25 3300005549 Ga0070704_100059077 Ga0070704_1000590772 560
26 3300006237 Ga0097621_100068603 Ga0097621_1000686032 560
27 3300006358 Ga0068871_100009131 Ga0068871_1000091318 560
28 3300009176 Ga0105242_10012795 Ga0105242_100127956 560
29 3300014969 Ga0157376_10020596 Ga0157376_100205962 560
30 3300025934 Ga0207686_10001134 Ga0207686_1000113417 560
31 3300025940 Ga0207691_10059801 Ga0207691_100598012 560
32 3300026121 Ga0207683_10074368 Ga0207683_100743682 560
33 3300009553 Ga0105249_10068461 Ga0105249_100684612 561
34 iso_pu_bacteria 2916178963 2916182408 561
35 3300044712 Ga0453684_0007680 Ga0453684_0007680_7963_9723 562
36 iso_pu_bacteria 2884634485 2884635994 564
37 iso_pu_bacteria 2919688452 2919688731 564
38 3300046522 Ga0495643_0000041 Ga0495643_0000041_223526_225313 566
39 3300048925 Ga0496122_0000221 Ga0496122_0000221_80308_82134 566
40 3300005288 Ga0065714_10066375 Ga0065714_100663754 567
41 3300025893 Ga0207682_10016967 Ga0207682_100169672 567
42 3300049574 Ga0501038_0024829 Ga0501038_0024829_795_2552 567
43 3300049581 Ga0501047_0005337 Ga0501047_0005337_2629_4386 567
44 3300049581 Ga0501047_0023908 Ga0501047_0023908_355_2121 567
45 3300049589 Ga0501073_0007104 Ga0501073_0007104_3909_5666 567
46 3300049742 Ga0501080_0007176 Ga0501080_0007176_7148_8905 567
47 3300049744 Ga0501083_0040341 Ga0501083_0040341_871_2628 567
48 3300047472 Ga0495686_0000007 Ga0495686_0000007_18280_20064 568
49 3300045051 Ga0451576_0000052 Ga0451576_0000052_19787_21598 569
50 iso_pu_bacteria 2510917021 2511127299 569
51 iso_pu_bacteria 2582581280 2585153922 569
52 iso_pu_bacteria 2582581293 2585194915 569
53 iso_pu_bacteria 8054302542 8054304318 569
54 iso_pu_bacteria 2690315857 2691330483 570
55 iso_pu_bacteria 2919534386 2919535537 570
56 3300046810 Ga0495660_0025931 Ga0495660_0025931_1459_3231 571
57 3300005334 Ga0068869_100009342 Ga0068869_1000093426 572
58 3300025942 Ga0207689_10011015 Ga0207689_100110155 572
59 3300028794 Ga0307515_10072896 Ga0307515_100728962 572
60 3300045051 Ga0451576_0002800 Ga0451576_0002800_7596_9398 572
61 3300049581 Ga0501047_0000370 Ga0501047_0000370_25130_26908 572
62 3300049742 Ga0501080_0055828 Ga0501080_0055828_1052_2830 572
63 3300049744 Ga0501083_0007748 Ga0501083_0007748_1809_3587 572
64 3300006880 Ga0075429_100019928 Ga0075429_1000199282 573
65 3300046512 Ga0495610_0000606 Ga0495610_0000606_29237_31024 573
66 3300050508 nmdc:mga09592_31153_c1 nmdc:mga09592_31153_c1_1990_3798 573
67 iso_pu_bacteria 2818991438 2819551796 573
68 3300005340 Ga0070689_100010596 Ga0070689_1000105962 574
69 3300005365 Ga0070688_100019420 Ga0070688_1000194202 574
70 3300031995 Ga0307409_100026519 Ga0307409_1000265193 575
71 3300032005 Ga0307411_10082460 Ga0307411_100824602 575
72 3300031251 Ga0265327_10000032 Ga0265327_10000032203 576
73 3300005841 Ga0068863_100046736 Ga0068863_1000467362 577
74 3300006846 Ga0075430_100059356 Ga0075430_1000593564 577
75 3300025298 Ga0209050_1000191 Ga0209050_100019179 577
76 3300026088 Ga0207641_10031416 Ga0207641_100314164 577
77 3300028563 Ga0265319_1002681 Ga0265319_10026814 577
78 3300028794 Ga0307515_10000001 Ga0307515_10000001272 577
79 3300048919 Ga0496116_0000011 Ga0496116_0000011_346052_347938 577
80 3300048924 Ga0496121_0002232 Ga0496121_0002232_2424_4232 577
81 3300048925 Ga0496122_0022182 Ga0496122_0022182_408_2228 577
82 3300048926 Ga0496123_0000202 Ga0496123_0000202_59534_61420 577
83 3300048927 Ga0496124_0000947 Ga0496124_0000947_10348_12156 577
84 3300048929 Ga0496126_0000167 Ga0496126_0000167_99332_101218 577
85 3300050509 nmdc:mga0qj67_92445_c1 nmdc:mga0qj67_92445_c1_375_2195 577
86 3300006847 Ga0075431_100006912 Ga0075431_1000069123 578
87 iso_pu_bacteria 2919497567 2919500620 578
88 3300042876 Ga0451577_0006320 Ga0451577_0006320_79_1926 579
89 3300044712 Ga0453684_0006460 Ga0453684_0006460_1240_3087 579
90 3300046519 Ga0495632_0032953 Ga0495632_0032953_231_2057 579
91 3300031251 Ga0265327_10000967 Ga0265327_1000096725 580
92 3300031251 Ga0265327_10038415 Ga0265327_100384152 580
93 3300005544 Ga0070686_100000844 Ga0070686_1000008442 581
94 3300048091 Ga0495626_0000949 Ga0495626_0000949_4915_6723 581
95 3300041404 Ga0439436_0015761 Ga0439436_0015761_147_1961 582
96 3300041406 Ga0439439_0009926 Ga0439439_0009926_427_2241 582
97 3300042004 Ga0439445_0007650 Ga0439445_0007650_172_1986 582
98 3300049571 Ga0501034_0075159 Ga0501034_0075159_635_2458 582
99 3300049569 Ga0501032_0001847 Ga0501032_0001847_14892_16715 583
100 3300049583 Ga0501067_0000058 Ga0501067_0000058_53987_55954 583
101 3300049589 Ga0501073_0000154 Ga0501073_0000154_15022_16989 583
102 3300049593 Ga0501077_0000148 Ga0501077_0000148_24552_26519 583
103 3300049742 Ga0501080_0009035 Ga0501080_0009035_3938_5905 583
104 3300046683 Ga0495658_0029523 Ga0495658_0029523_500_2368 584
105 3300046460 Ga0495638_0004960 Ga0495638_0004960_812_2641 585
106 3300047469 Ga0495673_0007502 Ga0495673_0007502_4347_6173 585
107 iso_pu_bacteria 2643221545 2643747289 586
108 iso_pu_bacteria 2643221691 2644507513 586
109 iso_pu_bacteria 2510917020 2511122940 587
110 iso_pu_bacteria 2643221552 2643779885 587
111 iso_pu_bacteria 2643221583 2643924539 587
112 iso_pu_bacteria 2818991435 2819540497 587
113 iso_pu_bacteria 2818991454 2819649441 587
114 3300046460 Ga0495638_0000951 Ga0495638_0000951_22327_24153 588
115 3300046460 Ga0495638_0001655 Ga0495638_0001655_3395_5236 589
116 3300046460 Ga0495638_0004556 Ga0495638_0004556_4779_6605 589
117 3300046471 Ga0495650_0000024 Ga0495650_0000024_175708_177549 589
118 3300046512 Ga0495610_0002149 Ga0495610_0002149_11034_12875 589
119 3300046512 Ga0495610_0007270 Ga0495610_0007270_4061_5893 589
120 3300046660 Ga0495625_0005224 Ga0495625_0005224_9116_10957 589
121 3300046660 Ga0495625_0066708 Ga0495625_0066708_24_1850 589
122 3300047320 Ga0495672_0009534 Ga0495672_0009534_1191_3017 589
123 3300047472 Ga0495686_0016573 Ga0495686_0016573_3152_4984 589
124 3300049671 Ga0501238_000473 Ga0501238_000473_1782_3608 589
125 3300053102 Ga0500554_004074 Ga0500554_004074_1110_2933 589
126 3300053136 Ga0500559_0000212 Ga0500559_0000212_12161_13987 589
127 3300053136 Ga0500559_0007326 Ga0500559_0007326_2882_4708 589
128 3300025297 Ga0209758_1007719 Ga0209758_10077193 590
129 3300025304 Ga0209257_1000427 Ga0209257_100042728 590
130 3300046453 Ga0495627_000923 Ga0495627_000923_5235_7067 590
131 3300046506 Ga0495583_0000003 Ga0495583_0000003_86817_88643 590
132 3300046513 Ga0495616_0000517 Ga0495616_0000517_1497_3323 590
133 3300046519 Ga0495632_0007842 Ga0495632_0007842_924_2750 590
134 3300046520 Ga0495637_0012364 Ga0495637_0012364_575_2416 590
135 3300046524 Ga0495648_0044807 Ga0495648_0044807_860_2704 590
136 3300046530 Ga0495654_0000118 Ga0495654_0000118_57923_59767 590
137 3300046660 Ga0495625_0008999 Ga0495625_0008999_1863_3707 590
138 3300046660 Ga0495625_0014963 Ga0495625_0014963_218_2047 590
139 3300046794 Ga0495589_0004211 Ga0495589_0004211_2326_4158 590
140 3300047446 Ga0495679_004441 Ga0495679_004441_4504_6333 590
141 3300047469 Ga0495673_0000102 Ga0495673_0000102_12077_13909 590
142 3300048910 Ga0496107_0000131 Ga0496107_0000131_16500_18356 590
143 3300048924 Ga0496121_0011220 Ga0496121_0011220_27_1883 590
144 3300053125 Ga0500618_000206 Ga0500618_000206_6712_8541 590
145 3300053156 Ga0500622_0055752 Ga0500622_0055752_143_1969 590
146 3300053158 Ga0500627_0006586 Ga0500627_0006586_654_2498 590
147 3300005262 Ga0065165_1001205 Ga0065165_100120512 591
148 3300025295 Ga0209564_1001381 Ga0209564_100138125 591
149 3300046520 Ga0495637_0020914 Ga0495637_0020914_648_2480 591
150 3300048918 Ga0496115_0004369 Ga0496115_0004369_1098_2942 591
151 3300053104 Ga0500556_0001460 Ga0500556_0001460_8073_9902 591
152 3300053730 Ga0500645_001275 Ga0500645_001275_4569_6401 591
153 3300003773 Ga0055537_1006721 Ga0055537_10067212 592
154 3300003790 Ga0055528_1013630 Ga0055528_10136302 592
155 3300025263 Ga0209565_1000636 Ga0209565_10006362 592
156 3300025273 Ga0209673_1002059 Ga0209673_100205910 592
157 3300025291 Ga0209675_1010328 Ga0209675_10103282 592
158 3300025297 Ga0209758_1010059 Ga0209758_10100595 592
159 3300025299 Ga0209256_1012532 Ga0209256_10125321 592
160 3300047472 Ga0495686_0003093 Ga0495686_0003093_3815_5647 592

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00246

Peptidase_M14

Zinc carboxypeptidase

124

346

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3l2n-assembly1.cif.gz_A crystal structure of putative carboxypeptidase a (yp_562911.1) from shewanella denitrificans os-217 at 2.39 a resolution 0.7668 68 345
4b6z-assembly1.cif.gz_A crystal structure of metallo-carboxypeptidase from burkholderia cenocepacia 0.7624 68 342
4b6z-assembly3.cif.gz_C crystal structure of metallo-carboxypeptidase from burkholderia cenocepacia 0.7514 68 342
4b6z-assembly2.cif.gz_B crystal structure of metallo-carboxypeptidase from burkholderia cenocepacia 0.7498 68 342
3b2y-assembly1.cif.gz_A crystal structure of a putative metallopeptidase (sden_2526) from shewanella denitrificans os217 at 1.74 a resolution 0.7403 69 344
ID Description Score Start End Superfamily
af_A0A0P0WSN8_58_197_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8493 66 198 3.40.630.10
af_A0A0P0WSN8_58_197_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.7472 66 198 3.40.630.10
af_Q8NEM8_311_573_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.7317 83 341 3.40.630.10
af_Q09M02_177_376_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.7263 81 219 3.40.630.10
af_B2GV17_159_401_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.7237 67 219 3.40.630.10
ID Description Score Start End GO Terms
AF-A0A4Q3TBE4-F1-model_v4 Carboxypeptidase 0.9763 151 540 GO:0004180
AF-A0A4Q3TBE4-F1-model_v4 Carboxypeptidase 0.9713 151 540 GO:0004180
AF-A0A4V1UL43-F1-model_v4 Carboxypeptidase 0.9609 16 512 GO:0004181
GO:0005615
GO:0006508
GO:0008270
AF-A0A2D2AUG5-F1-model_v4 Carboxypeptidase 0.9608 17 591 GO:0004181
GO:0005615
GO:0006508
GO:0008270
AF-A0A1M6LHU6-F1-model_v4 Zinc carboxypeptidase 0.9551 31 591 GO:0004181
GO:0005615
GO:0006508
GO:0008270

Feature Viewer

pLDDT pTM Quality
90.09 0.88 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map