F234552

General Info

Members Datasets Scaffolds Average Seq Length
160 142 129 320

Family's Representative Sequence

Representative Sequence 3300010375|Ga0105239_10001701|Ga0105239_1000170114
Length 332
Sequence VPRRRAASDGMQATSSLRVRVTRKTVEAEGICSFELAGEDGATLPAFSAGSHIDVHLPNGLTRQYSLCNEPGESHRYLIAVLRDAASRGGSAAMHEQVHEGQSIDISTPKNHFSLAHDARHSLLLAGGIGVTPILCMAERLARVGAPFEMHYCARSPARMAFRERIAGSPFASRVAWHFDDGAAGQKLDIESLTAAPEPGTHLYVCGPRGFIDAVLGAARAHGWPEARLHYEFFGAEGAPSTGNSSFEVQLASSGRVVTIAPDRSVVQALSAAGIAVQTSCEQGVCGTCLTRVLEGIPDHRDVYLTPEEQAAGDQFLPCCSRAKTPRLVLDL

Samples

Sample ID Description Type Environment
1 2510065045 Paraburkholderia sprentiae WSM5005 Isolate Nodule
2 2512047030 Paraburkholderia tuberum STM678 Isolate Nodule
3 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
4 2515154189 Paraburkholderia nodosa DSM 21604 Isolate Unclassified
5 2519103095 Burkholderia sp. KJ006 Isolate Nodule
6 2526164713 Paraburkholderia phenoliruptrix JPY366 Isolate Nodule
7 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
8 2582581311 Burkholderia sp. WP42 Isolate Rhizosphere
9 2599185240 Burkholderia sp. NFPP32 Isolate Rhizoplane
10 2599185355 Burkholderia sp. NFACC33-1 Isolate Rhizoplane
11 2675903129 Burkholderia pyrrocinia NFIX32 Isolate Rhizoplane
12 2718217991 Paraburkholderia sprentiae WSM5005 Isolate Nodule
13 2816332253 Burkholderia vietnamiensis HI2297 Isolate Unclassified
14 2816332256 Burkholderia vietnamiensis MSMB608WGS Isolate Unclassified
15 2816332286 Burkholderia vietnamiensis HI2221 Isolate Rhizosphere
16 2870068957 Burkholderia sp. JP2-270 Isolate Unclassified
17 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
18 2900634093 Paraburkholderia dipogonis ICMP 19430 Isolate Unclassified
19 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
20 2904434214 Robbsia andropogonis 1567 Isolate Rhizosphere
21 2928157003 Burkholderia ambifaria 566 Isolate Unclassified
22 2928163908 Burkholderia sp. 567 Isolate Unclassified
23 2928536128 Burkholderia sola 565 Isolate Unclassified
24 2981990288 Burkholderia sp. PvR073 Isolate Rhizosphere
25 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
26 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
27 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
28 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
29 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
30 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
31 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
32 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
33 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
34 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
35 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
36 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
37 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
38 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
39 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
40 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
41 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
42 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
43 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
44 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
45 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
46 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
47 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
48 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
49 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
50 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
51 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
57 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
58 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
59 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
60 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
61 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
62 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
63 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
64 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
69 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
93 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
94 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
95 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
99 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
100 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
101 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
102 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
103 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
104 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
105 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
106 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
107 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
108 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
109 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
110 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
111 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
112 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
113 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
114 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
115 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
116 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
121 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
122 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
125 3300049517 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control Metagenome Rhizosphere
126 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
127 3300049762 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control Metagenome Rhizosphere
128 3300049777 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control Metagenome Rhizosphere
129 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
130 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
131 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
132 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
133 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
134 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
135 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
136 641736154 Burkholderia ambifaria IOP40-10 Isolate Rhizosphere
137 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
138 8020807995 Burkholderia sp. B10 Isolate Rhizosphere
139 8020938398 Burkholderia sp. BE12 Isolate Rhizosphere
140 8020953355 Burkholderia sp. BE24 Isolate Rhizosphere
141 8040167225 Burkholderia vietnamiensis RS1 Isolate Unclassified
142 8040173305 Burkholderia vietnamiensis BE10 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.62
Metatranscriptomes 0
Isolates 19.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.25
Nodule 4.38
Rhizoplane 2.5
Rhizosphere 67.5
Stem 0
Stem Tuber 0
Unclassified 14.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055532_1000308 3300003758 Bacteria 29596
2 Ga0055527_1000284 3300003760 Bacteria 29854
3 Ga0055535_1000595 3300003761 Bacteria 29854
4 Ga0055542_1002088 3300003762 Bacteria 7437
5 Ga0055529_1002823 3300003763 Bacteria 3137
6 Ga0065714_10068167 3300005288 Bacteria 4918
7 Ga0070658_10004375 3300005327 Bacteria 11528
8 Ga0070676_10004533 3300005328 Bacteria 7316
9 Ga0070670_100054578 3300005331 Bacteria 3431
10 Ga0070669_100049682 3300005353 Bacteria 3062
11 Ga0070675_100033770 3300005354 Bacteria 4149
12 Ga0070671_100124483 3300005355 Bacteria 2170
13 Ga0070673_100017901 3300005364 Bacteria 5050
14 Ga0070673_100347220 3300005364 Bacteria 1316
15 Ga0070659_100000616 3300005366 Bacteria 26101
16 Ga0070663_100000239 3300005455 Bacteria 27754
17 Ga0068867_100000006 3300005459 Bacteria 152530
18 Ga0068867_100008425 3300005459 Bacteria 7273
19 Ga0070672_100417359 3300005543 Bacteria 1152
20 Ga0070665_100102443 3300005548 Bacteria 2866
21 Ga0068855_100278212 3300005563 Bacteria 1859
22 Ga0070664_100050721 3300005564 Bacteria 3512
23 Ga0068852_100150517 3300005616 Bacteria 2163
24 Ga0068863_100271736 3300005841 Bacteria 1641
25 Ga0075365_10055270 3300006038 Bacteria 2634
26 Ga0075366_10117608 3300006195 Bacteria 1601
27 Ga0075370_10127490 3300006353 Bacteria 1484
28 Ga0105250_10044392 3300009092 Bacteria 1782
29 Ga0105240_10003282 3300009093 Bacteria 25301
30 Ga0105240_10098898 3300009093 Bacteria 3552
31 Ga0105243_10002671 3300009148 Bacteria 14814
32 Ga0105237_10007761 3300009545 Bacteria 11704
33 Ga0105238_10056135 3300009551 Bacteria 3951
34 Ga0105238_10080217 3300009551 Bacteria 3253
35 Ga0105238_10253927 3300009551 Bacteria 1737
36 Ga0105239_10001701 3300010375 Bacteria 28997
37 Ga0105239_10025704 3300010375 Bacteria 6484
38 Ga0157373_10104076 3300013100 Bacteria 1996
39 Ga0157370_10216915 3300013104 Bacteria 1773
40 Ga0163162_10500568 3300013306 Bacteria 1345
41 Ga0182008_10014438 3300014497 Bacteria 4135
42 Ga0157377_10000013 3300014745 Bacteria 267125
43 Ga0182006_1045422 3300015261 Bacteria 1709
44 Ga0182006_1064875 3300015261 Bacteria 1368
45 Ga0182007_10001637 3300015262 Bacteria 11859
46 Ga0182007_10008085 3300015262 Bacteria 4343
47 Ga0182005_1010237 3300015265 Bacteria 2703
48 Ga0209672_100020 3300025228 Bacteria 429003
49 Ga0209147_100024 3300025229 Bacteria 429003
50 Ga0209258_100084 3300025242 Bacteria 244783
51 Ga0209148_1001409 3300025254 Bacteria 12349
52 Ga0209759_1004815 3300025256 Bacteria 4912
53 Ga0209455_1000652 3300025272 Bacteria 21189
54 Ga0207688_10157838 3300025901 Bacteria 1343
55 Ga0207645_10018525 3300025907 Bacteria 4579
56 Ga0207705_10031763 3300025909 Bacteria 3771
57 Ga0207695_10000624 3300025913 Bacteria 71152
58 Ga0207695_10010412 3300025913 Bacteria 11378
59 Ga0207695_10017234 3300025913 Bacteria 8413
60 Ga0207671_10005616 3300025914 Bacteria 11508
61 Ga0207657_10000003 3300025919 Bacteria 263148
62 Ga0207681_10040833 3300025923 Bacteria 3089
63 Ga0207694_10101368 3300025924 Bacteria 2281
64 Ga0207650_10047541 3300025925 Bacteria 3162
65 Ga0207644_10093766 3300025931 Bacteria 2242
66 Ga0207690_10000007 3300025932 Bacteria 388533
67 Ga0207709_10005372 3300025935 Bacteria 7286
68 Ga0207679_10037591 3300025945 Bacteria 3443
69 Ga0207667_10084965 3300025949 Bacteria 3276
70 Ga0207667_10556561 3300025949 Bacteria 1160
71 Ga0207639_10110402 3300026041 Bacteria 2240
72 Ga0207678_10003670 3300026067 Bacteria 13803
73 Ga0207648_10000006 3300026089 Bacteria 223855
74 Ga0207648_10013240 3300026089 Bacteria 7684
75 Ga0207698_10170371 3300026142 Bacteria 1916
76 Ga0209968_1001503 3300027526 Bacteria 3544
77 Ga0209999_1014499 3300027543 Bacteria 1433
78 Ga0209966_1000167 3300027695 Bacteria 27200
79 Ga0268264_10315268 3300028381 Bacteria 1477
80 Ga0307514_10018084 3300031649 Bacteria 5789
81 Ga0307516_10000340 3300031730 Bacteria 61066
82 Ga0307412_10116602 3300031911 Bacteria 1916
83 Ga0373937_0123870 3300036401 Bacteria 2410
84 Ga0395905_0004139 3300037471 Bacteria 15179
85 Ga0395905_0043569 3300037471 Bacteria 4210
86 Ga0395905_0136883 3300037471 Bacteria 2304
87 Ga0395905_0323002 3300037471 Bacteria 1433
88 Ga0395901_0040898 3300038443 Bacteria 4802
89 Ga0450903_015313 3300042138 Bacteria 1209
90 Ga0439446_0025781 3300042156 Bacteria 1681
91 Ga0451577_0097149 3300042876 Bacteria 2631
92 Ga0466969_0003238 3300044656 Bacteria 8661
93 Ga0466966_0016900 3300044684 Bacteria 4822
94 Ga0466961_0000331 3300044693 Bacteria 31174
95 Ga0466961_0037099 3300044693 Bacteria 3127
96 Ga0466963_0001053 3300044694 Bacteria 14350
97 Ga0466968_0014563 3300044735 Bacteria 3108
98 Ga0466957_0015730 3300044842 Bacteria 4420
99 Ga0466958_0004531 3300045836 Bacteria 7346
100 Ga0495590_0002765 3300046457 Bacteria 7237
101 Ga0495651_0116437 3300046462 Bacteria 1969
102 Ga0495616_0007480 3300046513 Bacteria 6538
103 Ga0495637_0000253 3300046520 Bacteria 42043
104 Ga0495654_0008620 3300046530 Bacteria 5622
105 Ga0495599_0002014 3300046678 Bacteria 11751
106 Ga0495623_0040734 3300046679 Bacteria 2965
107 Ga0495649_0000317 3300046694 Bacteria 41939
108 Ga0495675_0125333 3300047444 Bacteria 1598
109 Ga0496104_0088281 3300048907 Bacteria 2962
110 Ga0496116_0115692 3300048919 Bacteria 1564
111 Ga0496121_0000672 3300048924 Bacteria 63750
112 Ga0496121_0026052 3300048924 Bacteria 5528
113 Ga0496122_0005247 3300048925 Bacteria 15531
114 Ga0496123_0003782 3300048926 Bacteria 16575
115 Ga0496124_0216018 3300048927 Bacteria 1446
116 Ga0496126_0017360 3300048929 Bacteria 7172
117 Ga0496126_0241818 3300048929 Bacteria 1508
118 Ga0501292_013082 3300049515 Bacteria 1273
119 Ga0501294_002332 3300049517 Bacteria 1812
120 Ga0501253_002391 3300049683 Bacteria 2106
121 Ga0501265_001570 3300049762 Bacteria 2573
122 Ga0501281_01825 3300049777 Bacteria 1612
123 nmdc:mga0yw44_188727_c1 3300050492 Bacteria 1359
124 nmdc:mga0k408_110876_c1 3300050493 Bacteria 1622
125 nmdc:mga07m45_73291_c1 3300050496 Bacteria 1949
126 Ga0500590_017936 3300053148 Bacteria 3662
127 Ga0500634_0037845 3300053161 Bacteria 2624
128 Ga0501082_0000010 3300060353 Bacteria 122899
129 Ga0466962_0006209 3300061719 Bacteria 5737

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300042156 Ga0439446_0025781 Ga0439446_0025781_213_1184 307
2 3300046530 Ga0495654_0008620 Ga0495654_0008620_1774_2715 313
3 3300048929 Ga0496126_0241818 Ga0496126_0241818_314_1258 314
4 3300044656 Ga0466969_0003238 Ga0466969_0003238_494_1444 316
5 3300044693 Ga0466961_0000331 Ga0466961_0000331_1519_2469 316
6 3300044694 Ga0466963_0001053 Ga0466963_0001053_11304_12254 316
7 3300044842 Ga0466957_0015730 Ga0466957_0015730_1431_2381 316
8 3300045836 Ga0466958_0004531 Ga0466958_0004531_2866_3816 316
9 3300061719 Ga0466962_0006209 Ga0466962_0006209_722_1672 316
10 iso_pu_bacteria 8020938398 8020940579 316
11 iso_pu_bacteria 8020953355 8020956466 316
12 3300037471 Ga0395905_0043569 Ga0395905_0043569_1097_2053 317
13 3300046457 Ga0495590_0002765 Ga0495590_0002765_1389_2345 317
14 3300046513 Ga0495616_0007480 Ga0495616_0007480_5095_6051 317
15 3300048924 Ga0496121_0000672 Ga0496121_0000672_16876_17832 317
16 3300048929 Ga0496126_0017360 Ga0496126_0017360_2861_3817 317
17 3300053148 Ga0500590_017936 Ga0500590_017936_503_1456 317
18 3300053161 Ga0500634_0037845 Ga0500634_0037845_1031_1987 317
19 iso_pu_bacteria 2510065045 2510247821 317
20 iso_pu_bacteria 2512047030 2512350167 317
21 iso_pu_bacteria 2515154122 2515682134 317
22 iso_pu_bacteria 2515154189 2516023177 317
23 iso_pu_bacteria 2519103095 2519460409 317
24 iso_pu_bacteria 2526164713 2527080938 317
25 iso_pu_bacteria 2574179768 2574431986 317
26 iso_pu_bacteria 2582581311 2585292712 317
27 iso_pu_bacteria 2599185240 2599748267 317
28 iso_pu_bacteria 2599185355 2600210179 317
29 iso_pu_bacteria 2675903129 2676745669 317
30 iso_pu_bacteria 2718217991 2719643746 317
31 iso_pu_bacteria 2816332253 2817257799 317
32 iso_pu_bacteria 2816332256 2817281809 317
33 iso_pu_bacteria 2816332286 2817451448 317
34 iso_pu_bacteria 2870068957 2870073670 317
35 iso_pu_bacteria 2885270888 2885274393 317
36 iso_pu_bacteria 2902682994 2902690892 317
37 iso_pu_bacteria 2904434214 2904436977 317
38 iso_pu_bacteria 2928157003 2928158262 317
39 iso_pu_bacteria 2928163908 2928167519 317
40 iso_pu_bacteria 2928536128 2928542893 317
41 iso_pu_bacteria 2981990288 2981996655 317
42 iso_pu_bacteria 641736154 642415608 317
43 iso_pu_bacteria 8020807995 8020810931 317
44 iso_pu_bacteria 8040167225 8040172379 317
45 iso_pu_bacteria 8040173305 8040177029 317
46 3300037471 Ga0395905_0136883 Ga0395905_0136883_572_1531 318
47 3300044684 Ga0466966_0016900 Ga0466966_0016900_1500_2459 318
48 3300060353 Ga0501082_0000010 Ga0501082_0000010_42887_43858 318
49 iso_pu_bacteria 2900634093 2900638092 318
50 3300031649 Ga0307514_10018084 Ga0307514_100180844 319
51 3300048907 Ga0496104_0088281 Ga0496104_0088281_791_1750 319
52 3300005288 Ga0065714_10068167 Ga0065714_100681672 320
53 3300027526 Ga0209968_1001503 Ga0209968_10015032 320
54 3300027543 Ga0209999_1014499 Ga0209999_10144991 320
55 3300027695 Ga0209966_1000167 Ga0209966_100016711 320
56 3300031730 Ga0307516_10000340 Ga0307516_1000034042 320
57 3300031911 Ga0307412_10116602 Ga0307412_101166022 320
58 3300046520 Ga0495637_0000253 Ga0495637_0000253_32205_33167 320
59 3300046694 Ga0495649_0000317 Ga0495649_0000317_8750_9712 320
60 3300048924 Ga0496121_0026052 Ga0496121_0026052_1154_2116 320
61 iso_pu_bacteria 8002285264 8002285392 320
62 3300003758 Ga0055532_1000308 Ga0055532_100030823 321
63 3300003760 Ga0055527_1000284 Ga0055527_100028423 321
64 3300003761 Ga0055535_1000595 Ga0055535_100059523 321
65 3300003762 Ga0055542_1002088 Ga0055542_10020883 321
66 3300003763 Ga0055529_1002823 Ga0055529_10028233 321
67 3300005327 Ga0070658_10004375 Ga0070658_100043753 321
68 3300005328 Ga0070676_10004533 Ga0070676_100045332 321
69 3300005331 Ga0070670_100054578 Ga0070670_1000545782 321
70 3300005353 Ga0070669_100049682 Ga0070669_1000496822 321
71 3300005354 Ga0070675_100033770 Ga0070675_1000337702 321
72 3300005355 Ga0070671_100124483 Ga0070671_1001244832 321
73 3300005364 Ga0070673_100017901 Ga0070673_1000179013 321
74 3300005364 Ga0070673_100347220 Ga0070673_1003472202 321
75 3300005366 Ga0070659_100000616 Ga0070659_10000061615 321
76 3300005455 Ga0070663_100000239 Ga0070663_10000023919 321
77 3300005459 Ga0068867_100000006 Ga0068867_10000000651 321
78 3300005459 Ga0068867_100008425 Ga0068867_1000084254 321
79 3300005543 Ga0070672_100417359 Ga0070672_1004173591 321
80 3300005548 Ga0070665_100102443 Ga0070665_1001024432 321
81 3300005563 Ga0068855_100278212 Ga0068855_1002782122 321
82 3300005564 Ga0070664_100050721 Ga0070664_1000507213 321
83 3300005616 Ga0068852_100150517 Ga0068852_1001505172 321
84 3300005841 Ga0068863_100271736 Ga0068863_1002717362 321
85 3300006038 Ga0075365_10055270 Ga0075365_100552702 321
86 3300006195 Ga0075366_10117608 Ga0075366_101176082 321
87 3300006353 Ga0075370_10127490 Ga0075370_101274902 321
88 3300009092 Ga0105250_10044392 Ga0105250_100443921 321
89 3300009093 Ga0105240_10003282 Ga0105240_100032828 321
90 3300009093 Ga0105240_10098898 Ga0105240_100988982 321
91 3300009148 Ga0105243_10002671 Ga0105243_100026718 321
92 3300009545 Ga0105237_10007761 Ga0105237_100077613 321
93 3300009551 Ga0105238_10056135 Ga0105238_100561352 321
94 3300009551 Ga0105238_10080217 Ga0105238_100802174 321
95 3300009551 Ga0105238_10253927 Ga0105238_102539272 321
96 3300010375 Ga0105239_10001701 Ga0105239_1000170114 321
97 3300010375 Ga0105239_10025704 Ga0105239_100257042 321
98 3300013100 Ga0157373_10104076 Ga0157373_101040762 321
99 3300013104 Ga0157370_10216915 Ga0157370_102169152 321
100 3300013306 Ga0163162_10500568 Ga0163162_105005681 321
101 3300014497 Ga0182008_10014438 Ga0182008_100144383 321
102 3300014745 Ga0157377_10000013 Ga0157377_10000013113 321
103 3300015261 Ga0182006_1045422 Ga0182006_10454222 321
104 3300015261 Ga0182006_1064875 Ga0182006_10648752 321
105 3300015262 Ga0182007_10001637 Ga0182007_100016376 321
106 3300015262 Ga0182007_10008085 Ga0182007_100080854 321
107 3300015265 Ga0182005_1010237 Ga0182005_10102372 321
108 3300025228 Ga0209672_100020 Ga0209672_10002045 321
109 3300025229 Ga0209147_100024 Ga0209147_10002445 321
110 3300025242 Ga0209258_100084 Ga0209258_10008445 321
111 3300025254 Ga0209148_1001409 Ga0209148_100140910 321
112 3300025256 Ga0209759_1004815 Ga0209759_10048152 321
113 3300025272 Ga0209455_1000652 Ga0209455_10006526 321
114 3300025901 Ga0207688_10157838 Ga0207688_101578382 321
115 3300025907 Ga0207645_10018525 Ga0207645_100185252 321
116 3300025909 Ga0207705_10031763 Ga0207705_100317632 321
117 3300025913 Ga0207695_10000624 Ga0207695_100006249 321
118 3300025913 Ga0207695_10010412 Ga0207695_100104122 321
119 3300025913 Ga0207695_10017234 Ga0207695_100172344 321
120 3300025914 Ga0207671_10005616 Ga0207671_100056167 321
121 3300025919 Ga0207657_10000003 Ga0207657_1000000359 321
122 3300025923 Ga0207681_10040833 Ga0207681_100408333 321
123 3300025924 Ga0207694_10101368 Ga0207694_101013682 321
124 3300025925 Ga0207650_10047541 Ga0207650_100475412 321
125 3300025931 Ga0207644_10093766 Ga0207644_100937662 321
126 3300025932 Ga0207690_10000007 Ga0207690_1000000760 321
127 3300025935 Ga0207709_10005372 Ga0207709_100053728 321
128 3300025945 Ga0207679_10037591 Ga0207679_100375913 321
129 3300025949 Ga0207667_10084965 Ga0207667_100849652 321
130 3300025949 Ga0207667_10556561 Ga0207667_105565612 321
131 3300026041 Ga0207639_10110402 Ga0207639_101104022 321
132 3300026067 Ga0207678_10003670 Ga0207678_100036708 321
133 3300026089 Ga0207648_10000006 Ga0207648_10000006138 321
134 3300026089 Ga0207648_10013240 Ga0207648_100132408 321
135 3300026142 Ga0207698_10170371 Ga0207698_101703712 321
136 3300028381 Ga0268264_10315268 Ga0268264_103152682 321
137 3300036401 Ga0373937_0123870 Ga0373937_0123870_705_1670 321
138 3300037471 Ga0395905_0004139 Ga0395905_0004139_5912_6886 321
139 3300037471 Ga0395905_0323002 Ga0395905_0323002_103_1077 321
140 3300038443 Ga0395901_0040898 Ga0395901_0040898_218_1186 321
141 3300042138 Ga0450903_015313 Ga0450903_015313_184_1155 321
142 3300042876 Ga0451577_0097149 Ga0451577_0097149_1193_2161 321
143 3300044693 Ga0466961_0037099 Ga0466961_0037099_1906_2871 321
144 3300044735 Ga0466968_0014563 Ga0466968_0014563_661_1632 321
145 3300046462 Ga0495651_0116437 Ga0495651_0116437_294_1259 321
146 3300046678 Ga0495599_0002014 Ga0495599_0002014_1235_2200 321
147 3300046679 Ga0495623_0040734 Ga0495623_0040734_1655_2620 321
148 3300047444 Ga0495675_0125333 Ga0495675_0125333_466_1431 321
149 3300048919 Ga0496116_0115692 Ga0496116_0115692_74_1039 321
150 3300048925 Ga0496122_0005247 Ga0496122_0005247_12468_13436 321
151 3300048926 Ga0496123_0003782 Ga0496123_0003782_14010_14978 321
152 3300048927 Ga0496124_0216018 Ga0496124_0216018_241_1209 321
153 3300049515 Ga0501292_013082 Ga0501292_013082_96_1064 321
154 3300049517 Ga0501294_002332 Ga0501294_002332_318_1286 321
155 3300049683 Ga0501253_002391 Ga0501253_002391_970_1938 321
156 3300049762 Ga0501265_001570 Ga0501265_001570_1167_2138 321
157 3300049777 Ga0501281_01825 Ga0501281_01825_191_1159 321
158 3300050492 nmdc:mga0yw44_188727_c1 nmdc:mga0yw44_188727_c1_91_1056 321
159 3300050493 nmdc:mga0k408_110876_c1 nmdc:mga0k408_110876_c1_438_1409 321
160 3300050496 nmdc:mga07m45_73291_c1 nmdc:mga07m45_73291_c1_273_1241 321

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00111

Fer2

2Fe-2S iron-sulfur cluster binding domain

249

324

0.91

PF22290

DmmA-like_N

Dimethylamine monooxygenase subunit DmmA-like, N-terminal domain

103

229

0.84

PF00175

NAD_binding_1

Oxidoreductase NAD-binding domain

124

216

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
6icm-assembly1.cif.gz_D-2 pseudomonas putida cbb5 ndma with ferredoxin domain of ndmd 0.9417 235 321
6icm-assembly1.cif.gz_D-2 pseudomonas putida cbb5 ndma with ferredoxin domain of ndmd 0.9214 235 321
1gvh-assembly1.cif.gz_A the x-ray structure of ferric escherichia coli flavohemoglobin reveals an unespected geometry of the distal heme pocket 0.8687 4 226
5ogx-assembly1.cif.gz_A crystal structure of amycolatopsis cytochrome p450 reductase gcob. 0.8652 4 223
4eh1-assembly1.cif.gz_A crystal structure of the flavohem-like-fad/nad binding domain of nitric oxide dioxygenase from vibrio cholerae o1 biovar el tor 0.857 6 225
ID Description Score Start End Superfamily
2piaA01 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9829 4 100 2.40.30.10
af_O86347_1_100_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9822 3 100 2.40.30.10
af_O86347_1_100_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9534 3 100 2.40.30.10
af_P76254_2_105_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9519 1 100 2.40.30.10
af_P76254_106_225_3.40.50.80 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.9476 102 223 3.40.50.80
ID Description Score Start End GO Terms
AF-F3CK32-F1-model_v4 Vanillate monooxygenase, oxidoreductase subunit 0.9914 6 108 GO:0004497
GO:0051537
AF-A0A1L7ND98-F1-model_v4 Vanillate O-demethylase reductase subunit 0.9853 247 321 GO:0008168
GO:0032259
GO:0051537
AF-A0A382C6E7-F1-model_v4 FAD-binding FR-type domain-containing protein 0.9846 7 119 GO:0016491
GO:0051537
AF-A0A645APD0-F1-model_v4 Carnitine monooxygenase reductase subunit (EC 1.14.13.-) 0.9844 232 321 GO:0004497
GO:0051537
AF-W1HXX4-F1-model_v4 deleted 0.9813 235 321

Feature Viewer

pLDDT pTM Quality
87.44 0.73 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map