F234508

General Info

Members Datasets Scaffolds Average Seq Length
160 120 155 284

Family's Representative Sequence

Representative Sequence 3300009148|Ga0105243_10165973|Ga0105243_101659732
Length 307
Sequence MSAATHLLGGHAVFLLQRLGGRMTARVLSLHPAHRDDIGDLVTRRPLPGPGLDHLGAFLFLNHHGPQTYRPGNAGLPFGPHPHRGFETVTFILEGELAHRDSAGHESVIGAGGVQWMTAGSGLVHAEVSPERFKRSGGPLEILQLWVNLPAAHKMTPPRYTGVQAEAIPAIGCDGAQVHLVAGDWHGRQGPIESITGVFMTFLTMQPGSQLSFGGIAGRDLFLYVAHGAVRIDGTDVPKFNLAQLSPAESIAIEAREQSLVLFGHADPIDEPVVAYGPFVMNTEEEIREAIRDYQAGKFGAELLATA

Samples

Sample ID Description Type Environment
1 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
2 2818991435 Caulobacter henricii 536 Isolate Unclassified
3 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
4 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
5 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
6 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
14 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
15 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
18 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
19 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
20 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
21 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
44 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
45 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
46 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
47 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
51 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
53 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
68 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
69 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
72 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
73 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
74 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
75 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
76 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
77 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
78 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
79 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
80 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
81 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
82 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
83 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
84 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
87 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
88 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
89 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
90 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
91 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
92 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
93 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
94 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
95 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
96 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
97 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
98 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
101 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
104 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
110 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
111 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
112 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
113 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
114 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
115 3300053128 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 endosphere Metagenome Endosphere
116 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
117 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
118 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
119 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
120 8057160832 Larsenimonas rhizosphaerae GH2-1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95
Metatranscriptomes 0.62
Isolates 4.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 30
Nodule 0
Rhizoplane 1.88
Rhizosphere 53.12
Stem 0
Stem Tuber 0
Unclassified 15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25150J39212_1000882 3300002774 Bacteria 9851
2 JGI25153J46596_10000055 3300003215 Bacteria 135518
3 rootH1_10093318 3300003316 Bacteria 1516
4 rootH1_10093318 3300003323 Bacteria 1480
5 rootH2_10009605 3300003320 Bacteria 1976
6 rootH2_10021740 3300003320 Bacteria 1391
7 rootL2_10215900 3300003322 Bacteria 2266
8 rootH1_10044283 3300003323 Bacteria 4578
9 rootH1_10090710 3300003316 Bacteria 2103
10 rootH1_10090710 3300003323 Bacteria 4350
11 rootH1_10098900 3300003323 Bacteria 1973
12 Ga0055526_1008665 3300003771 Bacteria 5026
13 Ga0055537_1002607 3300003773 Bacteria 5902
14 Ga0055537_1005893 3300003773 Bacteria 3205
15 Ga0055524_1000405 3300003775 Bacteria 36783
16 Ga0055530_10012576 3300003791 Bacteria 2941
17 Ga0055540_1003585 3300003792 Bacteria 7413
18 Ga0055531_10000132 3300003794 Bacteria 85251
19 Ga0055531_10000472 3300003794 Bacteria 37251
20 Ga0055531_10006024 3300003794 Bacteria 6956
21 Ga0055531_10040116 3300003794 Bacteria 1378
22 Ga0065165_1002357 3300005262 Bacteria 16372
23 Ga0065165_1036073 3300005262 Bacteria 1512
24 Ga0070658_10336097 3300005327 Bacteria 1291
25 Ga0070691_10078539 3300005341 Bacteria 1612
26 Ga0070681_10030361 3300005458 Bacteria 5423
27 Ga0070681_10037452 3300005458 Bacteria 4867
28 Ga0068867_100227119 3300005459 Bacteria 1507
29 Ga0070679_100019476 3300005530 Bacteria 6598
30 Ga0070679_100020337 3300005530 Bacteria 6469
31 Ga0068855_100008392 3300005563 Bacteria 12493
32 Ga0068855_100636275 3300005563 Bacteria 1147
33 Ga0068857_100009743 3300005577 Bacteria 8344
34 Ga0068854_100234117 3300005578 Bacteria 1459
35 Ga0068856_100095891 3300005614 Bacteria 2955
36 Ga0068852_100126870 3300005616 Bacteria 2345
37 Ga0068859_100016743 3300005617 Bacteria 7360
38 Ga0068861_100000188 3300005719 Bacteria 32872
39 Ga0068865_100443413 3300006881 Bacteria 1072
40 Ga0097620_100016743 3300006931 Bacteria 7360
41 Ga0105251_10028837 3300009011 Bacteria 2801
42 Ga0105240_10088716 3300009093 Bacteria 3783
43 Ga0105243_10165973 3300009148 Bacteria 1908
44 Ga0105248_10023237 3300009177 Bacteria 6885
45 Ga0105237_10014971 3300009545 Bacteria 8084
46 Ga0105238_10060914 3300009551 Bacteria 3777
47 Ga0157371_10000063 3300013102 Bacteria 169490
48 Ga0157371_10038306 3300013102 Bacteria 3431
49 Ga0157370_10010188 3300013104 Bacteria 9925
50 Ga0157370_10076168 3300013104 Bacteria 3161
51 Ga0157369_10225882 3300013105 Bacteria 1959
52 Ga0157369_10275359 3300013105 Bacteria 1753
53 Ga0157369_10464114 3300013105 Bacteria 1311
54 Ga0183365_10001 3300015684 Bacteria 2090444
55 Ga0213876_10014914 3300021384 Bacteria 4119
56 Ga0207425_1000005 3300025245 Bacteria 900502
57 Ga0207425_1008914 3300025245 Bacteria 2530
58 Ga0209129_1000919 3300025258 Bacteria 17984
59 Ga0209565_1000029 3300025263 Bacteria 340335
60 Ga0209565_1000251 3300025263 Bacteria 57054
61 Ga0209673_1002955 3300025273 Bacteria 10654
62 Ga0209673_1018031 3300025273 Bacteria 2581
63 Ga0209676_1007860 3300025292 Bacteria 4899
64 Ga0209025_1000993 3300025294 Bacteria 42002
65 Ga0209564_1001873 3300025295 Bacteria 18970
66 Ga0209564_1008046 3300025295 Bacteria 5284
67 Ga0209758_1000002 3300025297 Bacteria 1400310
68 Ga0209758_1001963 3300025297 Bacteria 22239
69 Ga0209050_1000001 3300025298 Bacteria 3563507
70 Ga0209050_1000167 3300025298 Bacteria 151608
71 Ga0209050_1001659 3300025298 Bacteria 22539
72 Ga0209050_1025552 3300025298 Bacteria 2003
73 Ga0209256_1000008 3300025299 Bacteria 975723
74 Ga0209051_1000360 3300025303 Bacteria 67080
75 Ga0209257_1000004 3300025304 Bacteria 1678347
76 Ga0209257_1000028 3300025304 Bacteria 699493
77 Ga0209257_1000893 3300025304 Bacteria 41890
78 Ga0209257_1001287 3300025304 Bacteria 30619
79 Ga0209257_1017845 3300025304 Bacteria 2770
80 Ga0207655_1067774 3300025728 Bacteria 1342
81 Ga0207707_10044989 3300025912 Bacteria 3848
82 Ga0207707_10071756 3300025912 Bacteria 3018
83 Ga0207695_10001217 3300025913 Bacteria 44094
84 Ga0207671_10001574 3300025914 Bacteria 26006
85 Ga0207709_10270776 3300025935 Bacteria 1250
86 Ga0207711_10018127 3300025941 Bacteria 5853
87 Ga0207667_10062763 3300025949 Bacteria 3884
88 Ga0207675_100000077 3300026118 Bacteria 75568
89 Ga0265338_10053001 3300028800 Bacteria 3634
90 Ga0265314_10002558 3300031711 Bacteria 18480
91 Ga0316576_10135476 3300031727 Bacteria 1853
92 Ga0307412_10000262 3300031911 Bacteria 33773
93 Ga0395905_0189699 3300037471 Bacteria 1928
94 Ga0436365_1071583 3300039437 Bacteria 6677
95 Ga0439436_0009267 3300041404 Bacteria 3018
96 Ga0439461_0000005 3300041410 Bacteria 28399
97 Ga0439466_0067218 3300041411 Bacteria 1147
98 Ga0439465_0002780 3300041413 Bacteria 5730
99 Ga0439431_0000250 3300041997 Bacteria 10931
100 Ga0439431_0003446 3300041997 Bacteria 3486
101 Ga0439442_026944 3300042002 Bacteria 1197
102 Ga0439445_0000555 3300042004 Bacteria 7584
103 Ga0439432_000483 3300042006 Bacteria 14879
104 Ga0439462_0001528 3300042015 Bacteria 5178
105 Ga0439446_0065697 3300042156 Bacteria 1103
106 Ga0439434_0000498 3300042435 Bacteria 11175
107 Ga0439434_0008014 3300042435 Bacteria 3095
108 Ga0466969_0011068 3300044656 Bacteria 4777
109 Ga0466961_0050633 3300044693 Bacteria 2652
110 Ga0466971_0009280 3300044719 Bacteria 4298
111 Ga0466957_0069003 3300044842 Bacteria 2183
112 Ga0466959_0000086 3300045049 Bacteria 59057
113 Ga0466958_0082902 3300045836 Bacteria 1975
114 Ga0495627_035583 3300046453 Bacteria 1551
115 Ga0495607_0003858 3300046501 Bacteria 11295
116 Ga0495633_0000022 3300046558 Bacteria 226582
117 Ga0495633_0001814 3300046558 Bacteria 15732
118 Ga0495670_0000019 3300046691 Bacteria 114488
119 Ga0495660_0128419 3300046810 Bacteria 1274
120 Ga0495676_0034452 3300047321 Bacteria 4249
121 Ga0496102_0044829 3300048905 Bacteria 4014
122 Ga0496115_0000594 3300048918 Bacteria 27705
123 Ga0496115_0000665 3300048918 Bacteria 25387
124 Ga0496117_0002840 3300048920 Bacteria 21073
125 Ga0496118_0004010 3300048921 Bacteria 17914
126 Ga0496120_0036856 3300048923 Bacteria 2906
127 Ga0496122_0028303 3300048925 Bacteria 4760
128 Ga0496123_0020459 3300048926 Bacteria 5175
129 Ga0496124_0000972 3300048927 Bacteria 45648
130 Ga0496124_0040419 3300048927 Bacteria 4033
131 Ga0496124_0116903 3300048927 Bacteria 2137
132 Ga0496126_0000232 3300048929 Bacteria 120250
133 Ga0496126_0015990 3300048929 Bacteria 7525
134 Ga0501305_010581 3300049161 Bacteria 1233
135 Ga0501033_0064651 3300049570 Bacteria 2692
136 Ga0501034_0028100 3300049571 Bacteria 5721
137 Ga0501034_0059661 3300049571 Bacteria 3832
138 Ga0501073_0012445 3300049589 Bacteria 6207
139 Ga0501223_000806 3300049663 Bacteria 7419
140 Ga0501080_0021391 3300049742 Bacteria 5988
141 Ga0501241_002508 3300049758 Bacteria 3543
142 Ga0501241_002842 3300049758 Bacteria 3323
143 Ga0501035_0079701 3300049822 Bacteria 2892
144 Ga0501035_0152849 3300049822 Bacteria 2002
145 Ga0500635_0001285 3300053080 Bacteria 5996
146 Ga0500566_0004074 3300053094 Bacteria 8703
147 Ga0500641_0012275 3300053096 Bacteria 3127
148 Ga0500608_000099 3300053122 Bacteria 35321
149 Ga0500608_000198 3300053122 Bacteria 24139
150 Ga0500626_047010 3300053128 Bacteria 1947
151 Ga0500658_0007120 3300053134 Bacteria 4134
152 Ga0500658_0008178 3300053134 Bacteria 3866
153 Ga0500568_0014226 3300053139 Bacteria 3600
154 Ga0500622_0000677 3300053156 Bacteria 30106
155 Ga0466962_0013733 3300061719 Bacteria 3898

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005458 Ga0070681_10030361 Ga0070681_100303615 251
2 3300005530 Ga0070679_100020337 Ga0070679_1000203376 251
3 3300025912 Ga0207707_10044989 Ga0207707_100449894 251
4 3300039437 Ga0436365_1071583 Ga0436365_1071583_4455_5231 255
5 3300049589 Ga0501073_0012445 Ga0501073_0012445_1000_1851 262
6 3300049742 Ga0501080_0021391 Ga0501080_0021391_2820_3671 262
7 3300025298 Ga0209050_1025552 Ga0209050_10255523 269
8 3300049571 Ga0501034_0028100 Ga0501034_0028100_4696_5628 270
9 3300053122 Ga0500608_000198 Ga0500608_000198_15997_16851 270
10 3300031727 Ga0316576_10135476 Ga0316576_101354763 276
11 3300003320 rootH2_10021740 rootH2_100217401 277
12 3300003323 rootH1_10044283 rootH1_100442835 277
13 3300003323 rootH1_10098900 rootH1_100989002 277
14 3300013104 Ga0157370_10076168 Ga0157370_100761683 277
15 3300015684 Ga0183365_10001 Ga0183365_10001652 277
16 3300028800 Ga0265338_10053001 Ga0265338_100530013 277
17 3300037471 Ga0395905_0189699 Ga0395905_0189699_742_1581 277
18 3300044656 Ga0466969_0011068 Ga0466969_0011068_1058_1900 277
19 3300044693 Ga0466961_0050633 Ga0466961_0050633_311_1153 277
20 3300044719 Ga0466971_0009280 Ga0466971_0009280_2943_3785 277
21 3300044842 Ga0466957_0069003 Ga0466957_0069003_402_1244 277
22 3300045049 Ga0466959_0000086 Ga0466959_0000086_17531_18373 277
23 3300045836 Ga0466958_0082902 Ga0466958_0082902_245_1087 277
24 3300049570 Ga0501033_0064651 Ga0501033_0064651_942_1793 277
25 3300049571 Ga0501034_0059661 Ga0501034_0059661_1384_2226 277
26 3300049822 Ga0501035_0079701 Ga0501035_0079701_932_1783 277
27 3300049822 Ga0501035_0152849 Ga0501035_0152849_884_1726 277
28 3300053080 Ga0500635_0001285 Ga0500635_0001285_1640_2479 277
29 3300053122 Ga0500608_000099 Ga0500608_000099_13740_14582 277
30 3300061719 Ga0466962_0013733 Ga0466962_0013733_769_1611 277
31 iso_pu_bacteria 2818991435 2819536271 279
32 3300003320 rootH2_10009605 rootH2_100096052 280
33 3300003323 rootH1_10090710 rootH1_100907104 280
34 3300003794 Ga0055531_10000132 Ga0055531_1000013239 280
35 3300005563 Ga0068855_100636275 Ga0068855_1006362752 280
36 3300005616 Ga0068852_100126870 Ga0068852_1001268702 280
37 3300025304 Ga0209257_1000004 Ga0209257_10000041117 280
38 3300041997 Ga0439431_0003446 Ga0439431_0003446_878_1741 280
39 3300046453 Ga0495627_035583 Ga0495627_035583_626_1489 280
40 3300046558 Ga0495633_0000022 Ga0495633_0000022_41211_42074 280
41 3300047321 Ga0495676_0034452 Ga0495676_0034452_1046_1903 280
42 3300048929 Ga0496126_0015990 Ga0496126_0015990_887_1750 280
43 3300049663 Ga0501223_000806 Ga0501223_000806_4606_5454 280
44 3300049758 Ga0501241_002842 Ga0501241_002842_397_1260 280
45 3300053096 Ga0500641_0012275 Ga0500641_0012275_64_909 280
46 3300053156 Ga0500622_0000677 Ga0500622_0000677_26698_27561 280
47 3300005327 Ga0070658_10336097 Ga0070658_103360971 281
48 3300005614 Ga0068856_100095891 Ga0068856_1000958912 281
49 3300009011 Ga0105251_10028837 Ga0105251_100288372 281
50 3300013102 Ga0157371_10000063 Ga0157371_1000006337 281
51 3300021384 Ga0213876_10014914 Ga0213876_100149146 281
52 3300025728 Ga0207655_1067774 Ga0207655_10677742 281
53 3300031711 Ga0265314_10002558 Ga0265314_1000255811 281
54 3300046501 Ga0495607_0003858 Ga0495607_0003858_10313_11167 281
55 3300046810 Ga0495660_0128419 Ga0495660_0128419_184_1038 281
56 3300048905 Ga0496102_0044829 Ga0496102_0044829_867_1736 281
57 3300048920 Ga0496117_0002840 Ga0496117_0002840_2021_2890 281
58 3300048921 Ga0496118_0004010 Ga0496118_0004010_14862_15731 281
59 3300048929 Ga0496126_0000232 Ga0496126_0000232_98533_99402 281
60 3300049161 Ga0501305_010581 Ga0501305_010581_272_1138 281
61 iso_pu_bacteria 2928972540 2928974547 281
62 iso_pu_bacteria 2977240413 2977243471 281
63 iso_pu_bacteria 8057160832 8057163191 281
64 3300005341 Ga0070691_10078539 Ga0070691_100785392 282
65 3300005458 Ga0070681_10037452 Ga0070681_100374522 282
66 3300005530 Ga0070679_100019476 Ga0070679_1000194766 282
67 3300005563 Ga0068855_100008392 Ga0068855_1000083923 282
68 3300005578 Ga0068854_100234117 Ga0068854_1002341171 282
69 3300009093 Ga0105240_10088716 Ga0105240_100887165 282
70 3300009551 Ga0105238_10060914 Ga0105238_100609142 282
71 3300013102 Ga0157371_10038306 Ga0157371_100383063 282
72 3300013104 Ga0157370_10010188 Ga0157370_100101885 282
73 3300013105 Ga0157369_10225882 Ga0157369_102258823 282
74 3300013105 Ga0157369_10275359 Ga0157369_102753591 282
75 3300013105 Ga0157369_10464114 Ga0157369_104641141 282
76 3300025912 Ga0207707_10071756 Ga0207707_100717563 282
77 3300025913 Ga0207695_10001217 Ga0207695_100012179 282
78 3300025949 Ga0207667_10062763 Ga0207667_100627632 282
79 3300046558 Ga0495633_0001814 Ga0495633_0001814_6714_7574 282
80 3300048918 Ga0496115_0000594 Ga0496115_0000594_19530_20402 282
81 3300048925 Ga0496122_0028303 Ga0496122_0028303_2805_3665 282
82 iso_pu_bacteria 2643221622 2644127350 282
83 iso_pu_bacteria 2818991466 2819715403 282
84 iso_pu_bacteria 2928526807 2928530830 282
85 3300003316 rootH1_10093318 rootH1_100933182 283
86 3300003322 rootL2_10215900 rootL2_102159003 283
87 3300005617 Ga0068859_100016743 Ga0068859_1000167433 283
88 3300005719 Ga0068861_100000188 Ga0068861_10000018817 283
89 3300006931 Ga0097620_100016743 Ga0097620_1000167433 283
90 3300009177 Ga0105248_10023237 Ga0105248_100232375 283
91 3300025941 Ga0207711_10018127 Ga0207711_100181275 283
92 3300026118 Ga0207675_100000077 Ga0207675_10000007717 283
93 3300002774 JGI25150J39212_1000882 JGI25150J39212_10008826 284
94 3300003215 JGI25153J46596_10000055 JGI25153J46596_1000005512 284
95 3300003771 Ga0055526_1008665 Ga0055526_10086656 284
96 3300003773 Ga0055537_1002607 Ga0055537_10026076 284
97 3300003773 Ga0055537_1005893 Ga0055537_10058935 284
98 3300003775 Ga0055524_1000405 Ga0055524_10004055 284
99 3300003791 Ga0055530_10012576 Ga0055530_100125765 284
100 3300003792 Ga0055540_1003585 Ga0055540_10035855 284
101 3300003794 Ga0055531_10000472 Ga0055531_1000047229 284
102 3300003794 Ga0055531_10006024 Ga0055531_100060247 284
103 3300003794 Ga0055531_10040116 Ga0055531_100401162 284
104 3300005262 Ga0065165_1002357 Ga0065165_10023572 284
105 3300005262 Ga0065165_1036073 Ga0065165_10360732 284
106 3300005459 Ga0068867_100227119 Ga0068867_1002271191 284
107 3300005577 Ga0068857_100009743 Ga0068857_1000097438 284
108 3300006881 Ga0068865_100443413 Ga0068865_1004434131 284
109 3300009148 Ga0105243_10165973 Ga0105243_101659732 284
110 3300009545 Ga0105237_10014971 Ga0105237_100149715 284
111 3300025245 Ga0207425_1000005 Ga0207425_1000005684 284
112 3300025245 Ga0207425_1008914 Ga0207425_10089143 284
113 3300025258 Ga0209129_1000919 Ga0209129_100091918 284
114 3300025263 Ga0209565_1000029 Ga0209565_1000029130 284
115 3300025263 Ga0209565_1000251 Ga0209565_100025142 284
116 3300025273 Ga0209673_1002955 Ga0209673_10029556 284
117 3300025273 Ga0209673_1018031 Ga0209673_10180313 284
118 3300025292 Ga0209676_1007860 Ga0209676_10078605 284
119 3300025294 Ga0209025_1000993 Ga0209025_100099319 284
120 3300025295 Ga0209564_1001873 Ga0209564_100187318 284
121 3300025295 Ga0209564_1008046 Ga0209564_10080463 284
122 3300025297 Ga0209758_1000002 Ga0209758_1000002660 284
123 3300025297 Ga0209758_1001963 Ga0209758_100196325 284
124 3300025298 Ga0209050_1000001 Ga0209050_1000001641 284
125 3300025298 Ga0209050_1000167 Ga0209050_100016729 284
126 3300025298 Ga0209050_1001659 Ga0209050_100165911 284
127 3300025299 Ga0209256_1000008 Ga0209256_1000008739 284
128 3300025303 Ga0209051_1000360 Ga0209051_100036067 284
129 3300025304 Ga0209257_1000028 Ga0209257_1000028707 284
130 3300025304 Ga0209257_1000893 Ga0209257_100089328 284
131 3300025304 Ga0209257_1001287 Ga0209257_10012878 284
132 3300025304 Ga0209257_1017845 Ga0209257_10178452 284
133 3300025914 Ga0207671_10001574 Ga0207671_1000157421 284
134 3300025935 Ga0207709_10270776 Ga0207709_102707761 284
135 3300031911 Ga0307412_10000262 Ga0307412_100002629 284
136 3300041404 Ga0439436_0009267 Ga0439436_0009267_1739_2599 284
137 3300041410 Ga0439461_0000005 Ga0439461_0000005_14670_15530 284
138 3300041411 Ga0439466_0067218 Ga0439466_0067218_225_1082 284
139 3300041413 Ga0439465_0002780 Ga0439465_0002780_3586_4446 284
140 3300041997 Ga0439431_0000250 Ga0439431_0000250_3587_4447 284
141 3300042002 Ga0439442_026944 Ga0439442_026944_37_897 284
142 3300042004 Ga0439445_0000555 Ga0439445_0000555_6124_6984 284
143 3300042006 Ga0439432_000483 Ga0439432_000483_7964_8824 284
144 3300042015 Ga0439462_0001528 Ga0439462_0001528_3705_4565 284
145 3300042156 Ga0439446_0065697 Ga0439446_0065697_47_904 284
146 3300042435 Ga0439434_0000498 Ga0439434_0000498_6361_7221 284
147 3300042435 Ga0439434_0008014 Ga0439434_0008014_954_1811 284
148 3300046691 Ga0495670_0000019 Ga0495670_0000019_94652_95512 284
149 3300048918 Ga0496115_0000665 Ga0496115_0000665_20159_21019 284
150 3300048923 Ga0496120_0036856 Ga0496120_0036856_1277_2140 284
151 3300048926 Ga0496123_0020459 Ga0496123_0020459_786_1649 284
152 3300048927 Ga0496124_0000972 Ga0496124_0000972_1978_2841 284
153 3300048927 Ga0496124_0040419 Ga0496124_0040419_1258_2121 284
154 3300048927 Ga0496124_0116903 Ga0496124_0116903_163_1026 284
155 3300049758 Ga0501241_002508 Ga0501241_002508_2520_3380 284
156 3300053094 Ga0500566_0004074 Ga0500566_0004074_945_1802 284
157 3300053128 Ga0500626_047010 Ga0500626_047010_267_1124 284
158 3300053134 Ga0500658_0007120 Ga0500658_0007120_532_1392 284
159 3300053134 Ga0500658_0008178 Ga0500658_0008178_2885_3748 284
160 3300053139 Ga0500568_0014226 Ga0500568_0014226_171_1034 284

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05726

Pirin_C

Pirin C-terminal cupin domain

200

300

0.96

PF02678

Pirin

Pirin

40

147

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
7tfq-assembly1.cif.gz_A crystal structure of the pirin family protein redox-sensitive bicupin yhak bound to copper ion from yersinia pestis 0.954 3 276
6d0p-assembly4.cif.gz_D 1.88 angstrom resolution crystal structure of quercetin 2,3-dioxygenase from acinetobacter baumannii 0.9408 1 277
6d0p-assembly4.cif.gz_D 1.88 angstrom resolution crystal structure of quercetin 2,3-dioxygenase from acinetobacter baumannii 0.9154 1 277
4hlt-assembly1.cif.gz_A crystal structure of ferric e32v pirin 0.9111 2 274
5jct-assembly1.cif.gz_A crystal structure of human pirin in complex with a chemical probe pyrrolidine 24 0.9019 1 277
ID Description Score Start End Superfamily
af_Q5M827_137_273_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9357 144 272 2.60.120.10
af_Q9D711_137_245_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9218 144 245 2.60.120.10
af_C0P2Q1_61_325_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9208 10 274 2.60.120.10
4ewaA01 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.917 146 245 2.60.120.10
af_A0A0R0EY21_77_180_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9169 146 244 2.60.120.10
ID Description Score Start End GO Terms
AF-A0A1Q4E266-F1-model_v4 Nuclease PIN 1 1 284 GO:0046872
AF-A0A4Q5SYC2-F1-model_v4 Pirin family protein 0.9971 58 284 GO:0046872
AF-A0A520J292-F1-model_v4 Pirin family protein 0.9943 1 176 GO:0046872
AF-A0A4Q5SYC2-F1-model_v4 Pirin family protein 0.9927 58 284 GO:0046872
AF-A0A455UGE8-F1-model_v4 Pirin N-terminal domain-containing protein 0.9924 1 146 GO:0046872

Feature Viewer

pLDDT pTM Quality
95.35 0.92 High
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Predicted Structure (AlphaFold2)

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