F233959

General Info

Members Datasets Scaffolds Average Seq Length
160 129 320 278

Family's Representative Sequence

Representative Sequence 3300005436|Ga0070713_100212353|Ga0070713_1002123532
Length 321
Sequence MTTPATDRRVWLITGATSGFGRSLTEQVLRLGDIVVGAGRSISRLDDLKGAYPDRLFPVVLDVTDTARDAEVVDETAERLGRLDVLVNGAGRTQVGALEETTDAEMRFLFELHYFGPAALTKAALPHMRRQGGGWVVQFSSVGGQVTAPGFGAYCATKFALEGLTQTLSQEVPGVRFLIVEPGAFRTGLFGKDAAYFSSPLPEYAGTVGPTRVYVETGGGSQPGDPDKATRAILTAMASASPPLRLVLGGDAIDRIRQRLGDLQAELAEWEEFGRATSIDEWSITRRSCARPAPARLGALPGTAPGSPWDRTATCARSWPR

Samples

Sample ID Description Type Environment
1 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
27 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
41 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
44 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
45 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
48 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
51 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
73 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
74 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
79 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
80 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
81 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
82 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
83 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
84 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
87 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
88 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
89 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
90 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
91 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
92 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
93 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
94 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
95 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
96 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
97 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
98 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
99 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
100 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
101 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
102 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
103 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
104 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
105 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
106 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
107 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
108 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
109 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
112 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
113 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
114 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
115 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
116 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
117 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
118 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
119 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
120 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
121 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
122 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
123 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
124 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
125 2643221583 Caulobacter sp. Root655 Isolate Unclassified
126 2738541264 Mycobacterium sp. OK889 Isolate Unclassified
127 2738541356 Mycobacterium sp. OK887 Isolate Unclassified
128 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
129 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.62
Metatranscriptomes 0
Isolates 4.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.5
Nodule 0
Rhizoplane 4.38
Rhizosphere 70
Stem 0
Stem Tuber 0
Unclassified 3.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070713_100212353 3300005436 Bacteria 1752
2 JGI25153J46596_10016473 3300003215 Bacteria 2958
3 rootL2_10082786 3300003322 Bacteria 4173
4 JGI25160J50197_1006455 3300003354 Bacteria 4745
5 Ga0055528_1004433 3300003790 Bacteria 6770
6 Ga0065165_1001030 3300005262 Bacteria 33771
7 Ga0070683_100326542 3300005329 Bacteria 1461
8 Ga0068869_100224564 3300005334 Bacteria 1490
9 Ga0068868_100426858 3300005338 Bacteria 1149
10 Ga0068868_100563246 3300005338 Bacteria 1005
11 Ga0070660_100054378 3300005339 Bacteria 3091
12 Ga0070660_100526762 3300005339 Bacteria 985
13 Ga0070671_100356987 3300005355 Unclassified 1248
14 Ga0070709_10130796 3300005434 Bacteria 1713
15 Ga0070710_10004184 3300005437 Bacteria 6841
16 Ga0070711_100451801 3300005439 Bacteria 1052
17 Ga0070686_100060716 3300005544 Bacteria 2440
18 Ga0070665_100028125 3300005548 Bacteria 5662
19 Ga0068857_100521226 3300005577 Bacteria 1117
20 Ga0070702_100046306 3300005615 Bacteria 2464
21 Ga0068859_100439595 3300005617 Bacteria 1401
22 Ga0068864_100153828 3300005618 Bacteria 2086
23 Ga0068862_100158343 3300005844 Bacteria 2020
24 Ga0081538_10062636 3300005981 Bacteria 2120
25 Ga0081538_10152430 3300005981 Bacteria 1044
26 Ga0070717_10183233 3300006028 Bacteria 1826
27 Ga0070717_10209431 3300006028 Bacteria 1710
28 Ga0075365_10209828 3300006038 Bacteria 1365
29 Ga0075364_10048082 3300006051 Bacteria 2779
30 Ga0070715_10013374 3300006163 Bacteria 3013
31 Ga0070716_100064283 3300006173 Bacteria 2133
32 Ga0070712_100001165 3300006175 Bacteria 15922
33 Ga0070712_100079036 3300006175 Bacteria 2376
34 Ga0097620_100439582 3300006931 Bacteria 1401
35 Ga0105240_10155911 3300009093 Bacteria 2716
36 Ga0105245_10056261 3300009098 Bacteria 3535
37 Ga0105243_10026317 3300009148 Bacteria 4453
38 Ga0105242_10653170 3300009176 Bacteria 1023
39 Ga0105248_10597232 3300009177 Bacteria 1245
40 Ga0105248_10703346 3300009177 Bacteria 1140
41 Ga0105238_10136061 3300009551 Bacteria 2435
42 Ga0105239_10093391 3300010375 Bacteria 3322
43 Ga0105239_10230520 3300010375 Bacteria 2078
44 Ga0157369_10368503 3300013105 Unclassified 1491
45 Ga0157374_10261750 3300013296 Bacteria 1704
46 Ga0157372_10784654 3300013307 Bacteria 1107
47 Ga0163163_10384890 3300014325 Bacteria 1460
48 Ga0182008_10127706 3300014497 Bacteria 1267
49 Ga0157379_10186695 3300014968 Bacteria 1874
50 Ga0213876_10009836 3300021384 Bacteria 5145
51 Ga0213876_10087927 3300021384 Bacteria 1645
52 Ga0213875_10000159 3300021388 Bacteria 71303
53 Ga0209565_1000735 3300025263 Bacteria 19523
54 Ga0209673_1001586 3300025273 Bacteria 20104
55 Ga0209130_1000317 3300025284 Bacteria 56717
56 Ga0209675_1006107 3300025291 Bacteria 4904
57 Ga0209564_1002115 3300025295 Bacteria 16874
58 Ga0209758_1002116 3300025297 Bacteria 20979
59 Ga0209256_1010461 3300025299 Bacteria 3879
60 Ga0207426_1001327 3300025302 Bacteria 21106
61 Ga0207692_10056098 3300025898 Bacteria 2019
62 Ga0207693_10011820 3300025915 Bacteria 7055
63 Ga0207693_10042777 3300025915 Bacteria 3566
64 Ga0207663_10195853 3300025916 Bacteria 1454
65 Ga0207660_10342049 3300025917 Bacteria 1198
66 Ga0207662_10061604 3300025918 Bacteria 2253
67 Ga0207657_10020253 3300025919 Bacteria 6293
68 Ga0207694_10257633 3300025924 Unclassified 1428
69 Ga0207700_10151585 3300025928 Bacteria 1916
70 Ga0207664_10009929 3300025929 Bacteria 6705
71 Ga0207709_10106249 3300025935 Bacteria 1867
72 Ga0207665_10080771 3300025939 Bacteria 2237
73 Ga0207665_10084250 3300025939 Bacteria 2194
74 Ga0207689_10208533 3300025942 Bacteria 1614
75 Ga0207668_10238199 3300025972 Bacteria 1471
76 Ga0207702_10493708 3300026078 Bacteria 1193
77 Ga0207648_10066625 3300026089 Bacteria 3140
78 Ga0207675_100278851 3300026118 Bacteria 1624
79 Ga0268266_10013078 3300028379 Bacteria 7157
80 Ga0268265_10276498 3300028380 Bacteria 1500
81 Ga0268264_10001670 3300028381 Bacteria 20420
82 Ga0268264_10646655 3300028381 Bacteria 1046
83 Ga0307511_10000161 3300030521 Bacteria 65039
84 Ga0307513_10000984 3300031456 Bacteria 41224
85 Ga0307513_10115932 3300031456 Bacteria 2660
86 Ga0307509_10227913 3300031507 Bacteria 1669
87 Ga0395905_0021410 3300037471 Bacteria 6115
88 Ga0436364_0789043 3300037853 Bacteria 48837
89 Ga0436364_0952898 3300037853 Bacteria 1790
90 Ga0436364_1002370 3300037853 Bacteria 3375
91 Ga0395901_0010546 3300038443 Bacteria 9360
92 Ga0395901_0261503 3300038443 Bacteria 1801
93 Ga0436365_0064228 3300039437 Bacteria 5694
94 Ga0436365_1418830 3300039437 Bacteria 1892
95 Ga0436363_0517994 3300039450 Bacteria 1252
96 Ga0436363_1032033 3300039450 Bacteria 1479
97 Ga0436362_0461682 3300039453 Bacteria 1400
98 Ga0436362_0658891 3300039453 Bacteria 1687
99 Ga0436362_0741894 3300039453 Unclassified 1754
100 Ga0451843_1159157 3300041509 Bacteria 2302
101 Ga0466969_0023422 3300044656 Bacteria 3182
102 Ga0466966_0078432 3300044684 Bacteria 2059
103 Ga0466961_0007705 3300044693 Bacteria 6855
104 Ga0466961_0105863 3300044693 Bacteria 1771
105 Ga0466963_0050123 3300044694 Bacteria 2764
106 Ga0466968_0075463 3300044735 Bacteria 1474
107 Ga0466957_0022044 3300044842 Bacteria 3756
108 Ga0466959_0054360 3300045049 Bacteria 2926
109 Ga0466959_0088854 3300045049 Bacteria 2221
110 Ga0466959_0283690 3300045049 Bacteria 1136
111 Ga0466958_0011046 3300045836 Bacteria 5076
112 Ga0466958_0300233 3300045836 Bacteria 1031
113 Ga0466967_0000309 3300045976 Bacteria 22007
114 Ga0466967_0043528 3300045976 Bacteria 3888
115 Ga0466967_0174980 3300045976 Bacteria 2022
116 Ga0495627_000282 3300046453 Bacteria 51175
117 Ga0495603_0031027 3300046455 Bacteria 3217
118 Ga0495603_0191372 3300046455 Bacteria 1183
119 Ga0495594_0005200 3300046499 Bacteria 6687
120 Ga0495594_0147220 3300046499 Bacteria 1337
121 Ga0495610_0018002 3300046512 Bacteria 4005
122 Ga0495621_0004463 3300046539 Bacteria 3937
123 Ga0495622_0051959 3300046557 Bacteria 1901
124 Ga0495633_0012171 3300046558 Bacteria 4590
125 Ga0495656_0166795 3300046615 Bacteria 1074
126 Ga0495611_0105798 3300046648 Bacteria 1308
127 Ga0495625_0064201 3300046660 Bacteria 2591
128 Ga0495635_0069786 3300046663 Bacteria 2409
129 Ga0495635_0113799 3300046663 Bacteria 1847
130 Ga0495657_0001322 3300046675 Bacteria 21594
131 Ga0495613_0012351 3300046689 Bacteria 6346
132 Ga0495660_0099178 3300046810 Bacteria 1502
133 Ga0495636_0094734 3300047318 Bacteria 1299
134 Ga0495674_0102130 3300047319 Bacteria 2439
135 Ga0495674_0270797 3300047319 Bacteria 1393
136 Ga0495676_0166156 3300047321 Bacteria 1557
137 Ga0495685_065266 3300047447 Bacteria 1223
138 Ga0495673_0000273 3300047469 Bacteria 70294
139 Ga0495686_0027085 3300047472 Bacteria 3745
140 Ga0495686_0044598 3300047472 Bacteria 2807
141 Ga0496100_0132619 3300048903 Unclassified 1757
142 Ga0496102_0141607 3300048905 Bacteria 2255
143 Ga0496102_0265031 3300048905 Bacteria 1620
144 Ga0496104_0094329 3300048907 Bacteria 2863
145 Ga0496107_0197308 3300048910 Bacteria 1496
146 Ga0496108_0000064 3300048911 Bacteria 118022
147 Ga0496112_0130840 3300048915 Bacteria 2480
148 nmdc:mga03n38_127136_c1 3300050490 Bacteria 1259
149 nmdc:mga0yw44_255611_c1 3300050492 Bacteria 1167
150 Ga0500578_0196040 3300053086 Bacteria 1238
151 Ga0500597_000344 3300053120 Bacteria 9652
152 Ga0500658_0000899 3300053134 Bacteria 12188
153 Ga0500645_049883 3300053730 Bacteria 1223
154 2511124246 2510917020 Bacteria 5657507
155 2558913609 2558860112 Bacteria 9931328
156 2643923819 2643221583 Bacteria 5218014
157 2738665560 2738541264 Bacteria 5935393
158 2739144694 2738541356 Bacteria 5935017
159 2753267516 2751185782 Bacteria 11227053
160 2917740468 2917736166 Bacteria 9690793
161 Ga0070713_100212353
162 JGI25153J46596_10016473
163 rootL2_10082786
164 JGI25160J50197_1006455
165 Ga0055528_1004433
166 Ga0065165_1001030
167 Ga0070683_100326542
168 Ga0068869_100224564
169 Ga0068868_100426858
170 Ga0068868_100563246
171 Ga0070660_100054378
172 Ga0070660_100526762
173 Ga0070671_100356987
174 Ga0070709_10130796
175 Ga0070710_10004184
176 Ga0070711_100451801
177 Ga0070686_100060716
178 Ga0070665_100028125
179 Ga0068857_100521226
180 Ga0070702_100046306
181 Ga0068859_100439595
182 Ga0068864_100153828
183 Ga0068862_100158343
184 Ga0081538_10062636
185 Ga0081538_10152430
186 Ga0070717_10183233
187 Ga0070717_10209431
188 Ga0075365_10209828
189 Ga0075364_10048082
190 Ga0070715_10013374
191 Ga0070716_100064283
192 Ga0070712_100001165
193 Ga0070712_100079036
194 Ga0097620_100439582
195 Ga0105240_10155911
196 Ga0105245_10056261
197 Ga0105243_10026317
198 Ga0105242_10653170
199 Ga0105248_10597232
200 Ga0105248_10703346
201 Ga0105238_10136061
202 Ga0105239_10093391
203 Ga0105239_10230520
204 Ga0157369_10368503
205 Ga0157374_10261750
206 Ga0157372_10784654
207 Ga0163163_10384890
208 Ga0182008_10127706
209 Ga0157379_10186695
210 Ga0213876_10009836
211 Ga0213876_10087927
212 Ga0213875_10000159
213 Ga0209565_1000735
214 Ga0209673_1001586
215 Ga0209130_1000317
216 Ga0209675_1006107
217 Ga0209564_1002115
218 Ga0209758_1002116
219 Ga0209256_1010461
220 Ga0207426_1001327
221 Ga0207692_10056098
222 Ga0207693_10011820
223 Ga0207693_10042777
224 Ga0207663_10195853
225 Ga0207660_10342049
226 Ga0207662_10061604
227 Ga0207657_10020253
228 Ga0207694_10257633
229 Ga0207700_10151585
230 Ga0207664_10009929
231 Ga0207709_10106249
232 Ga0207665_10080771
233 Ga0207665_10084250
234 Ga0207689_10208533
235 Ga0207668_10238199
236 Ga0207702_10493708
237 Ga0207648_10066625
238 Ga0207675_100278851
239 Ga0268266_10013078
240 Ga0268265_10276498
241 Ga0268264_10001670
242 Ga0268264_10646655
243 Ga0307511_10000161
244 Ga0307513_10000984
245 Ga0307513_10115932
246 Ga0307509_10227913
247 Ga0395905_0021410
248 Ga0436364_0789043
249 Ga0436364_0952898
250 Ga0436364_1002370
251 Ga0395901_0010546
252 Ga0395901_0261503
253 Ga0436365_0064228
254 Ga0436365_1418830
255 Ga0436363_0517994
256 Ga0436363_1032033
257 Ga0436362_0461682
258 Ga0436362_0658891
259 Ga0436362_0741894
260 Ga0451843_1159157
261 Ga0466969_0023422
262 Ga0466966_0078432
263 Ga0466961_0007705
264 Ga0466961_0105863
265 Ga0466963_0050123
266 Ga0466968_0075463
267 Ga0466957_0022044
268 Ga0466959_0054360
269 Ga0466959_0088854
270 Ga0466959_0283690
271 Ga0466958_0011046
272 Ga0466958_0300233
273 Ga0466967_0000309
274 Ga0466967_0043528
275 Ga0466967_0174980
276 Ga0495627_000282
277 Ga0495603_0031027
278 Ga0495603_0191372
279 Ga0495594_0005200
280 Ga0495594_0147220
281 Ga0495610_0018002
282 Ga0495621_0004463
283 Ga0495622_0051959
284 Ga0495633_0012171
285 Ga0495656_0166795
286 Ga0495611_0105798
287 Ga0495625_0064201
288 Ga0495635_0069786
289 Ga0495635_0113799
290 Ga0495657_0001322
291 Ga0495613_0012351
292 Ga0495660_0099178
293 Ga0495636_0094734
294 Ga0495674_0102130
295 Ga0495674_0270797
296 Ga0495676_0166156
297 Ga0495685_065266
298 Ga0495673_0000273
299 Ga0495686_0027085
300 Ga0495686_0044598
301 Ga0496100_0132619
302 Ga0496102_0141607
303 Ga0496102_0265031
304 Ga0496104_0094329
305 Ga0496107_0197308
306 Ga0496108_0000064
307 Ga0496112_0130840
308 nmdc:mga03n38_127136_c1
309 nmdc:mga0yw44_255611_c1
310 Ga0500578_0196040
311 Ga0500597_000344
312 Ga0500658_0000899
313 Ga0500645_049883
314 2511124246
315 2558913609
316 2643923819
317 2738665560
318 2739144694
319 2753267516
320 2917740468

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

9

195

0.95

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

15

205

0.94

PF08659

KR

KR domain

10

178

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7e6o-assembly1.cif.gz_B crystal structure of polyol dehydrogenase from paracoccus denitrificans 0.9646 8 186
3m1a-assembly6.cif.gz_J the crystal structure of a short-chain dehydrogenase from streptomyces avermitilis to 2a 0.964 7 278
6pej-assembly1.cif.gz_B structure of sorbitol dehydrogenase from sinorhizobium meliloti 1021 bound to sorbitol 0.9606 8 186
3m1a-assembly6.cif.gz_J the crystal structure of a short-chain dehydrogenase from streptomyces avermitilis to 2a 0.9605 7 278
3n74-assembly1.cif.gz_C crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase from brucella melitensis 0.9599 8 183
ID Description Score Start End Superfamily
af_Q54WM6_4_292_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9557 6 281 3.40.50.720
af_P9WGQ3_5_269_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9531 7 190 3.40.50.720
af_Q75JD9_6_304_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.951 8 282 3.40.50.720
af_A0A1D6ED38_49_231_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9506 5 180 3.40.50.720
5g4kB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9498 5 187 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7Y8VGN1-F1-model_v4 deleted 0.9903 8 182
AF-A0A1Q9S972-F1-model_v4 Short-chain dehydrogenase/reductase 0.9896 7 188 GO:0016491
AF-A0A530M320-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9871 7 187 GO:0016491
AF-A0A846U4X5-F1-model_v4 NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) 0.9866 1 282 GO:0016491
AF-A0A2W6TGF0-F1-model_v4 Short-chain dehydrogenase/reductase 0.9864 7 195 GO:0016491

Map