F233956

General Info

Members Datasets Scaffolds Average Seq Length
160 125 117 287

Family's Representative Sequence

Representative Sequence 3300005436|Ga0070713_100015321|Ga0070713_1000153215
Length 299
Sequence VILVFGGTGQLGRELFRAAAERHVALQASARTEADIADAAAVAAALKRWQPDLVVNAAAYTNVDGAESHEAEARRANELGPAVLAAACAEAGIALVHISTDYVFDGSKDGAYRESDAVHPINAYGRGKAAGEEAVRRTLDRHVILRTAWLYSEFGRNFLKTMLQLAQTRDELRVVADQHGSPTSARELAEAILHIAPRLIAEPRLSGTYHFTAGGATTWHGFAECIVAAAAPITGRNPRIKPIATADFPTSAKRPANSRLDCSLFVQTFGLKPRPWREAVQATTRALVTAPQLAENHVA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
4 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
5 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
6 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
7 2582581873 Chryseobacterium sp. OV259 Isolate Rhizosphere
8 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
9 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
10 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
11 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
12 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
13 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
14 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
15 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
16 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
17 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
18 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
19 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
20 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
21 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
22 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
23 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
24 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
25 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
26 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
27 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
28 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
29 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
30 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
31 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
32 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
33 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
34 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
35 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
36 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
37 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
38 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
39 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
40 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
41 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
42 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
43 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
44 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
45 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
46 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
47 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
48 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
49 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
50 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
51 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
52 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
53 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
54 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
55 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
56 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
57 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
58 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
59 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
60 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
61 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
62 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
63 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
64 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
65 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
66 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
67 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
68 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
69 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
70 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
71 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
72 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
73 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
74 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
75 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
76 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
77 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
78 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
79 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
89 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
90 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
91 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
92 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
93 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
94 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
95 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
96 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
97 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
98 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
99 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
100 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
101 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
102 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
103 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
104 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
105 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
106 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
107 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
108 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
111 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
112 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
113 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
114 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
115 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
116 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
117 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
118 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
119 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
120 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
121 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
122 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
123 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
124 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
125 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.12
Metatranscriptomes 0
Isolates 26.88

Biome Distribution

Category Percentage (%)
Aerial Root 1.25
Bulb 0
Endosphere 5.62
Nodule 0.62
Rhizoplane 4.38
Rhizosphere 70
Stem 0
Stem Tuber 0
Unclassified 18.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2337797 2162886007 Bacteria 1587
2 SwRhRL2b_contig_3636236 2162886007 Bacteria 1049
3 JGI24741J21665_1001401 3300001915 Bacteria 6923
4 JGI25152J39213_1000300 3300002773 Bacteria 31900
5 JGI25150J39212_1000023 3300002774 Bacteria 130663
6 JGI25151J46595_10000082 3300003187 Bacteria 130832
7 JGI25153J46596_10000060 3300003215 Bacteria 131744
8 rootH2_10265569 3300003320 Bacteria 2173
9 rootH1_10065319 3300003323 Bacteria 9201
10 Ga0065714_10064456 3300005288 Bacteria 70947
11 Ga0065714_10070451 3300005288 Bacteria 3865
12 Ga0065714_10083969 3300005288 Bacteria 2222
13 Ga0065714_10096406 3300005288 Bacteria 1761
14 Ga0065704_10090534 3300005289 Bacteria 2780
15 Ga0065704_10126027 3300005289 Bacteria 1695
16 Ga0070658_10087011 3300005327 Bacteria 2571
17 Ga0070683_100012233 3300005329 Bacteria 7452
18 Ga0070682_100000133 3300005337 Bacteria 61302
19 Ga0070668_100065945 3300005347 Bacteria 2809
20 Ga0070668_100361285 3300005347 Bacteria 1231
21 Ga0070713_100015321 3300005436 Bacteria 5725
22 Ga0070684_100004441 3300005535 Bacteria 10678
23 Ga0070717_10065190 3300006028 Bacteria 3027
24 Ga0105244_10000013 3300009036 Bacteria 258350
25 Ga0105250_10021151 3300009092 Bacteria 2626
26 Ga0105243_10008423 3300009148 Bacteria 7914
27 Ga0105243_10296060 3300009148 Bacteria 1464
28 Ga0105249_10027600 3300009553 Bacteria 5123
29 Ga0157373_10023985 3300013100 Bacteria 4420
30 Ga0157373_10026310 3300013100 Bacteria 4203
31 Ga0157371_10000069 3300013102 Bacteria 165391
32 Ga0157371_10115063 3300013102 Bacteria 1910
33 Ga0157370_10001237 3300013104 Bacteria 31984
34 Ga0157370_10036761 3300013104 Bacteria 4751
35 Ga0157369_10000136 3300013105 Bacteria 104612
36 Ga0157378_10038326 3300013297 Bacteria 4248
37 Ga0157375_10019397 3300013308 Bacteria 6184
38 Ga0157375_10215188 3300013308 Bacteria 2079
39 Ga0182008_10000036 3300014497 Bacteria 130349
40 Ga0182006_1000001 3300015261 Bacteria 1091090
41 Ga0182006_1014433 3300015261 Bacteria 3406
42 Ga0163161_10050469 3300017792 Bacteria 3011
43 Ga0163161_10051310 3300017792 Bacteria 2987
44 Ga0163161_10053167 3300017792 Bacteria 2937
45 Ga0207425_1000051 3300025245 Bacteria 166795
46 Ga0209129_1000121 3300025258 Bacteria 135404
47 Ga0209675_1000034 3300025291 Bacteria 267827
48 Ga0209025_1000160 3300025294 Bacteria 166795
49 Ga0209758_1000147 3300025297 Bacteria 166795
50 Ga0207655_1000031 3300025728 Bacteria 392265
51 Ga0207700_10082912 3300025928 Bacteria 2509
52 Ga0207709_10004636 3300025935 Bacteria 7907
53 Ga0207661_10029654 3300025944 Bacteria 4205
54 Ga0207668_10319751 3300025972 Bacteria 1287
55 Ga0307412_10000006 3300031911 Bacteria 506878
56 Ga0307412_10000561 3300031911 Bacteria 21996
57 Ga0307412_10024187 3300031911 Bacteria 3747
58 Ga0307416_100000016 3300032002 Bacteria 205465
59 Ga0307414_10000316 3300032004 Bacteria 27886
60 Ga0307414_10000482 3300032004 Bacteria 20761
61 Ga0307414_10000884 3300032004 Bacteria 15349
62 Ga0307414_10022635 3300032004 Bacteria 3969
63 Ga0307414_10083921 3300032004 Bacteria 2341
64 Ga0307414_10156334 3300032004 Bacteria 1805
65 Ga0307414_10163280 3300032004 Bacteria 1772
66 Ga0395900_0364499 3300037418 Bacteria 1416
67 Ga0439465_0000003 3300041413 Bacteria 72076
68 Ga0439445_0000388 3300042004 Bacteria 8864
69 Ga0466966_0016966 3300044684 Bacteria 4812
70 Ga0466959_0092035 3300045049 Bacteria 2177
71 Ga0466958_0023351 3300045836 Bacteria 3630
72 Ga0495627_000030 3300046453 Bacteria 228883
73 Ga0495627_011100 3300046453 Bacteria 3245
74 Ga0495590_0008553 3300046457 Bacteria 3907
75 Ga0495638_0000144 3300046460 Bacteria 113604
76 Ga0495638_0000479 3300046460 Bacteria 47958
77 Ga0495596_0000505 3300046500 Bacteria 24793
78 Ga0495606_0046716 3300046507 Bacteria 2860
79 Ga0495610_0000036 3300046512 Bacteria 186904
80 Ga0495632_0004720 3300046519 Bacteria 9196
81 Ga0495643_0044083 3300046522 Bacteria 2425
82 Ga0495663_0000204 3300046525 Bacteria 23572
83 Ga0495654_0000142 3300046530 Bacteria 74610
84 Ga0495609_0000137 3300046538 Bacteria 77538
85 Ga0495633_0000001 3300046558 Bacteria 801972
86 Ga0495633_0003280 3300046558 Bacteria 10873
87 Ga0495625_0001321 3300046660 Bacteria 30823
88 Ga0495625_0059150 3300046660 Bacteria 2720
89 Ga0495686_0000327 3300047472 Bacteria 78430
90 Ga0495686_0002392 3300047472 Bacteria 17818
91 Ga0496102_0286953 3300048905 Bacteria 1551
92 Ga0496103_0113217 3300048906 Bacteria 1724
93 Ga0496105_0253006 3300048908 Bacteria 1427
94 Ga0496106_0345370 3300048909 Unclassified 1195
95 Ga0496109_0141297 3300048912 Bacteria 2251
96 Ga0496110_0178248 3300048913 Bacteria 1929
97 Ga0496112_0227955 3300048915 Unclassified 1818
98 Ga0496116_0000068 3300048919 Bacteria 259724
99 Ga0496117_0000062 3300048920 Bacteria 257535
100 Ga0496118_0003993 3300048921 Bacteria 17976
101 Ga0496119_0000024 3300048922 Bacteria 257750
102 Ga0496122_0000245 3300048925 Bacteria 121737
103 Ga0496122_0014417 3300048925 Bacteria 7645
104 Ga0496122_0019723 3300048925 Bacteria 6144
105 Ga0496122_0049489 3300048925 Bacteria 3217
106 Ga0496123_0000474 3300048926 Bacteria 69869
107 Ga0496123_0014654 3300048926 Bacteria 6480
108 Ga0496124_0001349 3300048927 Bacteria 36791
109 Ga0496124_0193462 3300048927 Bacteria 1554
110 Ga0496125_0033799 3300048928 Bacteria 4518
111 Ga0496125_0057521 3300048928 Bacteria 3148
112 Ga0496125_0061619 3300048928 Bacteria 3007
113 Ga0496126_0036968 3300048929 Bacteria 4561
114 Ga0496126_0149199 3300048929 Bacteria 2005
115 Ga0501241_000004 3300049758 Bacteria 177326
116 Ga0501269_000238 3300049766 Bacteria 16062
117 Ga0501280_006348 3300049776 Bacteria 1668

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2857627736 2857632427 254
2 iso_pu_bacteria 2511231000 2511233611 255
3 iso_pu_bacteria 2582581281 2585159775 255
4 iso_pu_bacteria 2582581282 2585164012 255
5 iso_pu_bacteria 2738541273 2738698918 255
6 iso_pu_bacteria 2738543014 2739253244 255
7 iso_pu_bacteria 2582581278 2585141890 256
8 iso_pu_bacteria 2582581873 2585426414 256
9 iso_pu_bacteria 2585428061 2587753905 256
10 iso_pu_bacteria 2585428095 2587866491 256
11 iso_pu_bacteria 2585428115 2587944703 256
12 iso_pu_bacteria 2585428182 2588212078 256
13 iso_pu_bacteria 2585428187 2588231905 256
14 iso_pu_bacteria 2739367874 2740059604 256
15 iso_pu_bacteria 2765235839 2765574782 256
16 iso_pu_bacteria 2772190705 2772604747 256
17 iso_pu_bacteria 2775506739 2775675075 256
18 iso_pu_bacteria 2816332188 2816876067 256
19 iso_pu_bacteria 2871720351 2871721612 256
20 iso_pu_bacteria 2919097161 2919100249 256
21 iso_pu_bacteria 2919399522 2919402126 256
22 iso_pu_bacteria 2993372514 2993375854 256
23 3300037418 Ga0395900_0364499 Ga0395900_0364499_107_958 257
24 iso_pu_bacteria 2585428045 2587680375 257
25 iso_pu_bacteria 2585428183 2588216260 257
26 iso_pu_bacteria 2585428184 2588221169 257
27 iso_pu_bacteria 2585428185 2588225620 257
28 iso_pu_bacteria 2588253712 2588448040 257
29 iso_pu_bacteria 2588254255 2590604057 257
30 iso_pu_bacteria 2588254257 2590609319 257
31 iso_pu_bacteria 2728369107 2729203046 257
32 iso_pu_bacteria 2751185877 2753674809 257
33 iso_pu_bacteria 2842083920 2842087130 257
34 iso_pu_bacteria 2889290771 2889294666 257
35 iso_pu_bacteria 2905999023 2906002777 257
36 iso_pu_bacteria 2946019816 2946023233 257
37 3300005288 Ga0065714_10096406 Ga0065714_100964062 258
38 iso_pu_bacteria 2523533629 2524005218 258
39 iso_pu_bacteria 2902048731 2902049711 258
40 iso_pu_bacteria 2977243572 2977244387 258
41 iso_pu_bacteria 2993480792 2993482721 258
42 3300005436 Ga0070713_100015321 Ga0070713_1000153215 259
43 3300006028 Ga0070717_10065190 Ga0070717_100651902 259
44 3300009553 Ga0105249_10027600 Ga0105249_100276004 259
45 3300025928 Ga0207700_10082912 Ga0207700_100829122 259
46 3300044684 Ga0466966_0016966 Ga0466966_0016966_2895_3794 259
47 3300045049 Ga0466959_0092035 Ga0466959_0092035_973_1872 259
48 3300045836 Ga0466958_0023351 Ga0466958_0023351_1830_2729 259
49 3300048905 Ga0496102_0286953 Ga0496102_0286953_605_1504 259
50 3300048908 Ga0496105_0253006 Ga0496105_0253006_47_946 259
51 3300048909 Ga0496106_0345370 Ga0496106_0345370_180_1079 259
52 3300048912 Ga0496109_0141297 Ga0496109_0141297_36_935 259
53 3300048913 Ga0496110_0178248 Ga0496110_0178248_518_1417 259
54 3300048915 Ga0496112_0227955 Ga0496112_0227955_475_1374 259
55 iso_pu_bacteria 2585428060 2587747370 259
56 iso_pu_bacteria 2945924605 2945925557 259
57 iso_pu_bacteria 2984572630 2984573723 259
58 iso_pu_bacteria 2984606641 2984607165 259
59 3300002773 JGI25152J39213_1000300 JGI25152J39213_100030026 260
60 3300002774 JGI25150J39212_1000023 JGI25150J39212_10000235 260
61 3300003187 JGI25151J46595_10000082 JGI25151J46595_100000825 260
62 3300003215 JGI25153J46596_10000060 JGI25153J46596_100000606 260
63 3300005288 Ga0065714_10064456 Ga0065714_1006445663 260
64 3300009092 Ga0105250_10021151 Ga0105250_100211512 260
65 3300013100 Ga0157373_10023985 Ga0157373_100239853 260
66 3300013100 Ga0157373_10026310 Ga0157373_100263102 260
67 3300013297 Ga0157378_10038326 Ga0157378_100383265 260
68 3300013308 Ga0157375_10019397 Ga0157375_100193972 260
69 3300013308 Ga0157375_10215188 Ga0157375_102151883 260
70 3300014497 Ga0182008_10000036 Ga0182008_100000362 260
71 3300017792 Ga0163161_10050469 Ga0163161_100504693 260
72 3300017792 Ga0163161_10053167 Ga0163161_100531673 260
73 3300025245 Ga0207425_1000051 Ga0207425_100005139 260
74 3300025258 Ga0209129_1000121 Ga0209129_10001216 260
75 3300025291 Ga0209675_1000034 Ga0209675_1000034245 260
76 3300025294 Ga0209025_1000160 Ga0209025_1000160121 260
77 3300025297 Ga0209758_1000147 Ga0209758_1000147121 260
78 3300031911 Ga0307412_10000561 Ga0307412_1000056117 260
79 3300031911 Ga0307412_10024187 Ga0307412_100241873 260
80 3300032004 Ga0307414_10000884 Ga0307414_100008845 260
81 3300032004 Ga0307414_10083921 Ga0307414_100839213 260
82 3300041413 Ga0439465_0000003 Ga0439465_0000003_70013_70873 260
83 3300042004 Ga0439445_0000388 Ga0439445_0000388_302_1162 260
84 3300046453 Ga0495627_000030 Ga0495627_000030_873_1733 260
85 3300046460 Ga0495638_0000144 Ga0495638_0000144_19975_20898 260
86 3300046460 Ga0495638_0000479 Ga0495638_0000479_20299_21222 260
87 3300046507 Ga0495606_0046716 Ga0495606_0046716_886_1746 260
88 3300046519 Ga0495632_0004720 Ga0495632_0004720_8106_8966 260
89 3300046525 Ga0495663_0000204 Ga0495663_0000204_654_1514 260
90 3300046530 Ga0495654_0000142 Ga0495654_0000142_898_1758 260
91 3300046538 Ga0495609_0000137 Ga0495609_0000137_1778_2638 260
92 3300046558 Ga0495633_0000001 Ga0495633_0000001_881_1741 260
93 3300046558 Ga0495633_0003280 Ga0495633_0003280_1539_2399 260
94 3300046660 Ga0495625_0001321 Ga0495625_0001321_866_1726 260
95 3300046660 Ga0495625_0059150 Ga0495625_0059150_1519_2442 260
96 3300047472 Ga0495686_0000327 Ga0495686_0000327_76091_76951 260
97 3300047472 Ga0495686_0002392 Ga0495686_0002392_16109_16969 260
98 3300048925 Ga0496122_0049489 Ga0496122_0049489_1128_1988 260
99 3300048926 Ga0496123_0014654 Ga0496123_0014654_368_1228 260
100 3300048927 Ga0496124_0193462 Ga0496124_0193462_513_1373 260
101 3300048928 Ga0496125_0033799 Ga0496125_0033799_733_1593 260
102 3300048928 Ga0496125_0057521 Ga0496125_0057521_1144_2004 260
103 3300049758 Ga0501241_000004 Ga0501241_000004_175243_176103 260
104 3300049766 Ga0501269_000238 Ga0501269_000238_14271_15131 260
105 3300001915 JGI24741J21665_1001401 JGI24741J21665_10014012 261
106 3300003320 rootH2_10265569 rootH2_102655692 261
107 3300003323 rootH1_10065319 rootH1_100653198 261
108 3300005288 Ga0065714_10083969 Ga0065714_100839692 261
109 3300005337 Ga0070682_100000133 Ga0070682_1000001332 261
110 3300005347 Ga0070668_100065945 Ga0070668_1000659453 261
111 3300005347 Ga0070668_100361285 Ga0070668_1003612851 261
112 3300009036 Ga0105244_10000013 Ga0105244_100000132 261
113 3300009148 Ga0105243_10008423 Ga0105243_100084232 261
114 3300009148 Ga0105243_10296060 Ga0105243_102960602 261
115 3300013102 Ga0157371_10115063 Ga0157371_101150632 261
116 3300013104 Ga0157370_10036761 Ga0157370_100367615 261
117 3300015261 Ga0182006_1000001 Ga0182006_10000013 261
118 3300015261 Ga0182006_1014433 Ga0182006_10144333 261
119 3300017792 Ga0163161_10051310 Ga0163161_100513102 261
120 3300025728 Ga0207655_1000031 Ga0207655_10000312 261
121 3300025935 Ga0207709_10004636 Ga0207709_100046362 261
122 3300025972 Ga0207668_10319751 Ga0207668_103197512 261
123 3300031911 Ga0307412_10000006 Ga0307412_100000062 261
124 3300032002 Ga0307416_100000016 Ga0307416_100000016185 261
125 3300032004 Ga0307414_10000316 Ga0307414_1000031619 261
126 3300032004 Ga0307414_10000482 Ga0307414_100004825 261
127 3300032004 Ga0307414_10022635 Ga0307414_100226353 261
128 3300032004 Ga0307414_10156334 Ga0307414_101563341 261
129 3300046500 Ga0495596_0000505 Ga0495596_0000505_23020_23883 261
130 3300046512 Ga0495610_0000036 Ga0495610_0000036_185131_185994 261
131 3300048906 Ga0496103_0113217 Ga0496103_0113217_704_1567 261
132 3300048919 Ga0496116_0000068 Ga0496116_0000068_257765_258628 261
133 3300048920 Ga0496117_0000062 Ga0496117_0000062_255702_256565 261
134 3300048921 Ga0496118_0003993 Ga0496118_0003993_1200_2063 261
135 3300048922 Ga0496119_0000024 Ga0496119_0000024_255713_256576 261
136 3300048925 Ga0496122_0000245 Ga0496122_0000245_119860_120723 261
137 3300048925 Ga0496122_0014417 Ga0496122_0014417_838_1701 261
138 3300048925 Ga0496122_0019723 Ga0496122_0019723_979_1842 261
139 3300048926 Ga0496123_0000474 Ga0496123_0000474_68028_68891 261
140 3300048927 Ga0496124_0001349 Ga0496124_0001349_34857_35720 261
141 3300048928 Ga0496125_0061619 Ga0496125_0061619_1038_1901 261
142 3300048929 Ga0496126_0036968 Ga0496126_0036968_2761_3624 261
143 3300048929 Ga0496126_0149199 Ga0496126_0149199_811_1674 261
144 3300049776 Ga0501280_006348 Ga0501280_006348_382_1245 261
145 2162886007 SwRhRL2b_contig_3636236 SwRhRL2b_0918.00004990 262
146 3300005288 Ga0065714_10070451 Ga0065714_100704512 262
147 3300005289 Ga0065704_10126027 Ga0065704_101260273 262
148 3300005327 Ga0070658_10087011 Ga0070658_100870112 262
149 3300032004 Ga0307414_10163280 Ga0307414_101632802 262
150 3300046453 Ga0495627_011100 Ga0495627_011100_212_1081 262
151 2162886007 SwRhRL2b_contig_2337797 SwRhRL2b_0843.00007100 263
152 3300005289 Ga0065704_10090534 Ga0065704_100905341 263
153 3300005329 Ga0070683_100012233 Ga0070683_1000122333 263
154 3300005535 Ga0070684_100004441 Ga0070684_1000044415 263
155 3300013102 Ga0157371_10000069 Ga0157371_10000069145 263
156 3300013104 Ga0157370_10001237 Ga0157370_1000123721 263
157 3300013105 Ga0157369_10000136 Ga0157369_1000013618 263
158 3300025944 Ga0207661_10029654 Ga0207661_100296542 263
159 3300046457 Ga0495590_0008553 Ga0495590_0008553_2481_3350 263
160 3300046522 Ga0495643_0044083 Ga0495643_0044083_990_1859 263

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04321

RmlD_sub_bind

RmlD substrate binding domain

1

289

0.98

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

18

152

0.92

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

2

203

0.85

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

20

161

0.82

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

17

223

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9366 3 259
3sc6-assembly6.cif.gz_F 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9332 1 257
1kbz-assembly1.cif.gz_A crystal structure of apo-dtdp-6-deoxy-l-lyxo-4-hexulose reductase (rmld) from salmonella enterica serovar typhimurium 0.9288 3 258
3sc6-assembly5.cif.gz_E 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9283 1 257
8ctr-assembly4.cif.gz_D crystal structure of dtdp-4-dehydrorhamnose reductase from klebsiella pneumoniae with bound nadp 0.928 1 259
ID Description Score Start End Superfamily
1vl0C02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9589 136 258 3.90.25.10
1vl0C02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9343 136 258 3.90.25.10
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9094 3 258 3.40.50.720
3sc6B02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9047 136 253 3.90.25.10
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.883 3 258 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3D3K0Q8-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9989 60 249 GO:0008831
GO:0019305
AF-A0A519W8W3-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9929 61 259 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A3D5UFC2-F1-model_v4 deleted 0.9924 121 256
AF-A0A4U8WNB8-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9911 1 258 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A1G9L3Z3-F1-model_v4 deleted 0.9909 1 258

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pLDDT pTM Quality
91.57 0.9 High
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Predicted Structure (AlphaFold2)

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