F233836
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 160 | 136 | 135 | 506 |
Family's Representative Sequence
| Representative Sequence | 3300005340|Ga0070689_100026115|Ga0070689_1000261153 |
| Length | 606 |
| Sequence | MRAVPVPVFGAREALGERRGHPGEERKADLLIDLAGTPPDEEVLGGEAREIRVGTSARYTRRYHRWSASDAKRRGRAVTRLVDLAEASAEIAATGARSAKTKRLAATLRAADTEDVPTIVAWLAGELLQRRIGVGWAALSTMPPAAPSPSLTVTAVNRTFSEMAEASGAGSQTRRSALLLEVMSKSTEVEQVFLRSLLSGNLRQGALAGVMSDAIATAAGVTSTEVRRATMLRGDLPAVAAAAMSGGSAALAAFRLEVGRALAPMLAQTASSVEEALEELGAPAAFEAKLDGARIQIHKRGDEVRLFTRSLDDVTARLGHVAADVARWPVPSLVADGEILWFAYAGGDEDARPLPFQETASRFARSASDAPLLQAERPSIFLFDALHVDGVDLLDRPNAERRAALEGIVTSTSAKVVDRIVTGEAREAKAFLDRMILLGYEGVVAKSLSAPYEAGRRGASWRKIKPVLTLDLVVLAVEWGSGRRTGKLSNIHLGARDPANGGFVMLGKTFKGMTDAMLAWQTQRFLELADGPTDGYVVTVRPEQVVEIAFDGLQKSTRYPGGMALRFARVVRYREDKTAAEADTIDTVRAIHARSRGEDDVDVERE |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2643221615 | Nocardioides sp. Root224 | Isolate | Unclassified |
| 2 | 2643221617 | Nocardioides sp. Root79 | Isolate | Unclassified |
| 3 | 2643221620 | Nocardioides sp. Root240 | Isolate | Unclassified |
| 4 | 2643221657 | Nocardioides sp. Root1257 | Isolate | Unclassified |
| 5 | 2643221681 | Aeromicrobium sp. Root472D3 | Isolate | Unclassified |
| 6 | 2643221715 | Mycobacterium sp. Root265 | Isolate | Unclassified |
| 7 | 2643221961 | Aeromicrobium sp. Root236 | Isolate | Unclassified |
| 8 | 2643221962 | Aeromicrobium sp. Root344 | Isolate | Unclassified |
| 9 | 2738543028 | Mycobacterium sp. YR782 | Isolate | Unclassified |
| 10 | 2739367898 | Nocardioides sp. CF479 | Isolate | Unclassified |
| 11 | 2816332119 | Kribbella amoyensis DSM 24683 | Isolate | Rhizosphere |
| 12 | 2855386786 | Nocardioides ferulae EGI 63112 | Isolate | Unclassified |
| 13 | 2867369537 | Streptomyces sp. Z26 | Isolate | Unclassified |
| 14 | 2867475112 | Streptomyces sp. TM32 | Isolate | Unclassified |
| 15 | 2873151551 | Streptomyces silaceus ACCC40021 | Isolate | Rhizosphere |
| 16 | 2902810491 | Mycolicibacterium sp. P9-22 | Isolate | Unclassified |
| 17 | 2929212328 | Mycolicibacterium sp. R-73050 Hybrid assembly | Isolate | Unclassified |
| 18 | 2939582691 | Mycolicibacterium sp. 624 | Isolate | Rhizosphere |
| 19 | 2974315732 | Rhodococcus sp. SORGH_AS 301 | Isolate | Unclassified |
| 20 | 2984523437 | Rhodococcus sp. SORGH_AS303 | Isolate | Aerial Root |
| 21 | 2990088156 | Streptomyces albidus CAP 215 | Isolate | Unclassified |
| 22 | 2997451912 | Streptomyces piniterrae jys28 | Isolate | Rhizosphere |
| 23 | 3006393351 | Streptomyces sp. SID4985 | Isolate | Unclassified |
| 24 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 25 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 26 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 27 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 28 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 29 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 30 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 31 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005406 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG | Metagenome | Rhizosphere |
| 33 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 34 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 35 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 36 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 37 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 38 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 39 | 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Metagenome | Rhizosphere |
| 40 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 41 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 42 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 43 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 44 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 45 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 46 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 47 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 48 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 49 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 50 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 51 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 52 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 53 | 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Metagenome | Rhizosphere |
| 54 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 56 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 57 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 58 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 59 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 60 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 61 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300027866 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) | Metagenome | Endosphere |
| 74 | 3300030522 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM | Metagenome | Unclassified |
| 75 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 76 | 3300031649 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM | Metagenome | Unclassified |
| 77 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 78 | 3300035170 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 | Metagenome | Rhizosphere |
| 79 | 3300035171 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 | Metagenome | Rhizosphere |
| 80 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 81 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 82 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 83 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 84 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 85 | 3300041997 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 | Metagenome | Rhizosphere |
| 86 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 87 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 88 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 89 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 90 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 91 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300046475 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046515 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046535 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046675 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 103 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 104 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 105 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 106 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 107 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 108 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 109 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 110 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 111 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 112 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 115 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 117 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 118 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 119 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 120 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 121 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 123 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 124 | 3300050495 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation | Metagenome | Endosphere |
| 125 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 126 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 127 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 128 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 129 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 130 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 131 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 132 | 3300053094 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere | Metagenome | Endosphere |
| 133 | 3300053730 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere | Metagenome | Endosphere |
| 134 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 135 | 8054160619 | Streptomyces rhizoryzae RS10V-4 | Isolate | Rhizosphere |
| 136 | 8054609563 | Nocardioides astragali CGMCC 4.7327 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 84.38 |
| Metatranscriptomes | 0 |
| Isolates | 15.62 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0.62 |
| Bulb | 0 |
| Endosphere | 9.38 |
| Nodule | 0.62 |
| Rhizoplane | 6.25 |
| Rhizosphere | 65 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 18.12 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24737J22298_10023056 | 3300001990 | Bacteria | 1976 |
| 2 | rootH1_10018158 | 3300003316 | Bacteria | 27698 |
| 3 | rootH2_10040973 | 3300003320 | Bacteria | 3528 |
| 4 | rootH1_10051724 | 3300003323 | Bacteria | 3612 |
| 5 | Ga0070680_100010108 | 3300005336 | Bacteria | 7275 |
| 6 | Ga0070689_100026115 | 3300005340 | Bacteria | 4394 |
| 7 | Ga0070668_100001922 | 3300005347 | Bacteria | 15184 |
| 8 | Ga0070667_100075100 | 3300005367 | Bacteria | 2885 |
| 9 | Ga0070703_10011016 | 3300005406 | Bacteria | 2552 |
| 10 | Ga0070694_100005971 | 3300005444 | Bacteria | 7383 |
| 11 | Ga0070694_100035783 | 3300005444 | Bacteria | 3285 |
| 12 | Ga0070694_100047685 | 3300005444 | Bacteria | 2880 |
| 13 | Ga0070706_100021742 | 3300005467 | Bacteria | 5906 |
| 14 | Ga0070706_100195775 | 3300005467 | Bacteria | 1888 |
| 15 | Ga0070699_100000006 | 3300005518 | Bacteria | 363492 |
| 16 | Ga0070699_100057431 | 3300005518 | Bacteria | 3371 |
| 17 | Ga0070679_100006112 | 3300005530 | Bacteria | 11200 |
| 18 | Ga0070684_100009411 | 3300005535 | Bacteria | 7693 |
| 19 | Ga0070697_100022789 | 3300005536 | Bacteria | 4977 |
| 20 | Ga0070697_100156163 | 3300005536 | Bacteria | 1926 |
| 21 | Ga0070695_100015915 | 3300005545 | Bacteria | 4547 |
| 22 | Ga0070696_100002137 | 3300005546 | Bacteria | 12996 |
| 23 | Ga0070665_100214021 | 3300005548 | Bacteria | 1928 |
| 24 | Ga0070704_100002489 | 3300005549 | Bacteria | 10358 |
| 25 | Ga0070704_100006359 | 3300005549 | Bacteria | 6962 |
| 26 | Ga0068857_100066208 | 3300005577 | Bacteria | 3214 |
| 27 | Ga0068857_100086114 | 3300005577 | Bacteria | 2809 |
| 28 | Ga0068864_100050374 | 3300005618 | Bacteria | 3584 |
| 29 | Ga0068866_10089411 | 3300005718 | Bacteria | 1674 |
| 30 | Ga0075365_10031943 | 3300006038 | Bacteria | 3381 |
| 31 | Ga0075363_100009430 | 3300006048 | Bacteria | 4589 |
| 32 | Ga0075363_100011862 | 3300006048 | Bacteria | 4186 |
| 33 | Ga0075363_100023623 | 3300006048 | Bacteria | 3119 |
| 34 | Ga0075363_100061098 | 3300006048 | Bacteria | 2030 |
| 35 | Ga0075428_100010911 | 3300006844 | Bacteria | 10106 |
| 36 | Ga0075428_100052567 | 3300006844 | Bacteria | 4464 |
| 37 | Ga0075430_100189785 | 3300006846 | Bacteria | 1708 |
| 38 | Ga0075433_10115651 | 3300006852 | Bacteria | 2380 |
| 39 | Ga0075434_100048577 | 3300006871 | Bacteria | 4210 |
| 40 | Ga0075436_100002788 | 3300006914 | Bacteria | 11965 |
| 41 | Ga0099794_10046574 | 3300007265 | Bacteria | 2077 |
| 42 | Ga0111539_10004301 | 3300009094 | Bacteria | 18627 |
| 43 | Ga0105247_10000345 | 3300009101 | Bacteria | 40650 |
| 44 | Ga0163163_10007670 | 3300014325 | Bacteria | 9533 |
| 45 | Ga0157380_10134799 | 3300014326 | Bacteria | 2112 |
| 46 | Ga0213876_10002170 | 3300021384 | Bacteria | 11586 |
| 47 | Ga0213875_10007190 | 3300021388 | Bacteria | 5778 |
| 48 | Ga0207426_1002682 | 3300025302 | Bacteria | 10887 |
| 49 | Ga0207647_10018975 | 3300025904 | Bacteria | 4633 |
| 50 | Ga0207647_10036931 | 3300025904 | Bacteria | 3101 |
| 51 | Ga0207660_10006091 | 3300025917 | Bacteria | 7827 |
| 52 | Ga0207652_10004665 | 3300025921 | Bacteria | 11112 |
| 53 | Ga0207687_10064024 | 3300025927 | Bacteria | 2606 |
| 54 | Ga0207670_10009722 | 3300025936 | Bacteria | 5503 |
| 55 | Ga0207711_10059316 | 3300025941 | Bacteria | 3294 |
| 56 | Ga0207661_10018955 | 3300025944 | Bacteria | 5120 |
| 57 | Ga0207668_10000954 | 3300025972 | Bacteria | 17421 |
| 58 | Ga0207708_10062979 | 3300026075 | Bacteria | 2833 |
| 59 | Ga0207648_10021252 | 3300026089 | Bacteria | 5835 |
| 60 | Ga0207674_10022719 | 3300026116 | Bacteria | 6730 |
| 61 | Ga0207674_10051389 | 3300026116 | Bacteria | 4206 |
| 62 | Ga0207675_100011015 | 3300026118 | Bacteria | 8466 |
| 63 | Ga0207675_100040519 | 3300026118 | Bacteria | 4349 |
| 64 | Ga0209813_10000470 | 3300027866 | Bacteria | 9686 |
| 65 | Ga0307512_10019288 | 3300030522 | Bacteria | 6213 |
| 66 | Ga0265327_10000167 | 3300031251 | Bacteria | 141405 |
| 67 | Ga0307514_10034214 | 3300031649 | Bacteria | 4050 |
| 68 | Ga0307411_10048784 | 3300032005 | Bacteria | 2747 |
| 69 | Ga0373943_0074041 | 3300035170 | Bacteria | 1731 |
| 70 | Ga0373946_0052932 | 3300035171 | Bacteria | 1704 |
| 71 | Ga0373925_0053219 | 3300037068 | Bacteria | 3025 |
| 72 | Ga0395905_0069761 | 3300037471 | Bacteria | 3292 |
| 73 | Ga0436364_1390044 | 3300037853 | Bacteria | 19719 |
| 74 | Ga0395901_0129409 | 3300038443 | Bacteria | 2653 |
| 75 | Ga0436365_0855910 | 3300039437 | Bacteria | 6465 |
| 76 | Ga0439431_0009021 | 3300041997 | Bacteria | 2248 |
| 77 | Ga0466965_0003470 | 3300044683 | Bacteria | 6915 |
| 78 | Ga0466963_0006599 | 3300044694 | Bacteria | 6882 |
| 79 | Ga0466963_0007233 | 3300044694 | Bacteria | 6619 |
| 80 | Ga0466970_0029317 | 3300044765 | Bacteria | 2897 |
| 81 | Ga0466957_0044096 | 3300044842 | Bacteria | 2702 |
| 82 | Ga0466967_0031041 | 3300045976 | Bacteria | 4493 |
| 83 | Ga0466967_0047963 | 3300045976 | Bacteria | 3727 |
| 84 | Ga0466967_0112131 | 3300045976 | Bacteria | 2507 |
| 85 | Ga0495629_0000004 | 3300046459 | Bacteria | 433516 |
| 86 | Ga0495638_0012216 | 3300046460 | Bacteria | 5895 |
| 87 | Ga0495639_0012703 | 3300046475 | Bacteria | 3632 |
| 88 | Ga0495664_0060492 | 3300046477 | Bacteria | 2255 |
| 89 | Ga0495620_0039067 | 3300046515 | Bacteria | 2101 |
| 90 | Ga0495666_0002245 | 3300046526 | Bacteria | 9613 |
| 91 | Ga0495652_0101716 | 3300046529 | Bacteria | 2329 |
| 92 | Ga0495586_0001123 | 3300046535 | Bacteria | 15055 |
| 93 | Ga0495657_0017637 | 3300046675 | Bacteria | 5179 |
| 94 | Ga0495613_0036742 | 3300046689 | Bacteria | 3632 |
| 95 | Ga0495581_0030521 | 3300047315 | Bacteria | 3123 |
| 96 | Ga0496101_0063446 | 3300048904 | Bacteria | 2690 |
| 97 | Ga0496102_0044583 | 3300048905 | Bacteria | 4026 |
| 98 | Ga0496104_0006607 | 3300048907 | Bacteria | 10200 |
| 99 | Ga0496105_0023482 | 3300048908 | Bacteria | 5002 |
| 100 | Ga0496108_0024231 | 3300048911 | Bacteria | 4997 |
| 101 | Ga0496109_0006206 | 3300048912 | Bacteria | 10046 |
| 102 | Ga0496110_0093248 | 3300048913 | Bacteria | 2695 |
| 103 | Ga0496110_0205563 | 3300048913 | Bacteria | 1790 |
| 104 | Ga0496110_0210108 | 3300048913 | Bacteria | 1769 |
| 105 | Ga0496112_0031380 | 3300048915 | Bacteria | 5153 |
| 106 | Ga0496116_0084184 | 3300048919 | Bacteria | 1960 |
| 107 | Ga0496126_0051529 | 3300048929 | Bacteria | 3746 |
| 108 | Ga0501033_0024446 | 3300049570 | Bacteria | 4557 |
| 109 | Ga0501034_0001532 | 3300049571 | Bacteria | 30322 |
| 110 | Ga0501034_0023670 | 3300049571 | Bacteria | 6255 |
| 111 | Ga0501036_0004811 | 3300049572 | Bacteria | 10916 |
| 112 | Ga0501038_0012577 | 3300049574 | Bacteria | 7734 |
| 113 | Ga0501039_0007618 | 3300049575 | Bacteria | 8271 |
| 114 | Ga0501043_0004150 | 3300049579 | Bacteria | 11836 |
| 115 | Ga0501070_0003348 | 3300049586 | Bacteria | 13915 |
| 116 | Ga0501070_0095965 | 3300049586 | Bacteria | 2453 |
| 117 | Ga0501074_0008529 | 3300049590 | Bacteria | 7426 |
| 118 | Ga0501035_0001804 | 3300049822 | Bacteria | 21640 |
| 119 | Ga0501044_0000552 | 3300049823 | Bacteria | 45539 |
| 120 | nmdc:mga00v17_16729_c1 | 3300050491 | Bacteria | 4136 |
| 121 | nmdc:mga0yw44_5659_c1 | 3300050492 | Bacteria | 5946 |
| 122 | nmdc:mga0yw44_66107_c1 | 3300050492 | Bacteria | 2230 |
| 123 | nmdc:mga04h51_11089_c1 | 3300050495 | Bacteria | 2493 |
| 124 | nmdc:mga05p37_117845_c1 | 3300050507 | Bacteria | 3263 |
| 125 | nmdc:mga05p37_332545_c1 | 3300050507 | Bacteria | 1794 |
| 126 | nmdc:mga0qj67_156108_c1 | 3300050509 | Bacteria | 1852 |
| 127 | nmdc:mga0n895_1870_c1 | 3300050512 | Bacteria | 16077 |
| 128 | nmdc:mga0rr50_100139_c1 | 3300050513 | Bacteria | 2275 |
| 129 | nmdc:mga0a205_48811_c1 | 3300050515 | Bacteria | 4086 |
| 130 | nmdc:mga0a205_5160_c1 | 3300050515 | Bacteria | 11741 |
| 131 | Ga0500643_000127 | 3300053087 | Bacteria | 78546 |
| 132 | Ga0500644_0000014 | 3300053088 | Bacteria | 109650 |
| 133 | Ga0500566_0007368 | 3300053094 | Bacteria | 6517 |
| 134 | Ga0500645_000057 | 3300053730 | Bacteria | 92092 |
| 135 | Ga0466962_0025470 | 3300061719 | Bacteria | 2840 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300050492 | nmdc:mga0yw44_66107_c1 | nmdc:mga0yw44_66107_c1_66_1382 | 429 |
| 2 | 3300046460 | Ga0495638_0012216 | Ga0495638_0012216_3841_5376 | 482 |
| 3 | 3300005347 | Ga0070668_100001922 | Ga0070668_1000019228 | 483 |
| 4 | 3300007265 | Ga0099794_10046574 | Ga0099794_100465741 | 483 |
| 5 | 3300025972 | Ga0207668_10000954 | Ga0207668_1000095413 | 483 |
| 6 | 3300045976 | Ga0466967_0047963 | Ga0466967_0047963_1957_3492 | 483 |
| 7 | 3300049823 | Ga0501044_0000552 | Ga0501044_0000552_13373_14911 | 483 |
| 8 | 3300048929 | Ga0496126_0051529 | Ga0496126_0051529_1489_3024 | 484 |
| 9 | 3300049570 | Ga0501033_0024446 | Ga0501033_0024446_1101_2639 | 484 |
| 10 | 3300049571 | Ga0501034_0001532 | Ga0501034_0001532_961_2499 | 484 |
| 11 | 3300049572 | Ga0501036_0004811 | Ga0501036_0004811_2135_3673 | 484 |
| 12 | 3300049574 | Ga0501038_0012577 | Ga0501038_0012577_4742_6280 | 484 |
| 13 | 3300049575 | Ga0501039_0007618 | Ga0501039_0007618_1412_2950 | 484 |
| 14 | 3300049579 | Ga0501043_0004150 | Ga0501043_0004150_10175_11713 | 484 |
| 15 | 3300049586 | Ga0501070_0003348 | Ga0501070_0003348_3534_5072 | 484 |
| 16 | 3300049590 | Ga0501074_0008529 | Ga0501074_0008529_713_2251 | 484 |
| 17 | 3300049822 | Ga0501035_0001804 | Ga0501035_0001804_9520_11058 | 484 |
| 18 | 3300053730 | Ga0500645_000057 | Ga0500645_000057_36745_38280 | 484 |
| 19 | 3300006048 | Ga0075363_100061098 | Ga0075363_1000610982 | 485 |
| 20 | 3300025941 | Ga0207711_10059316 | Ga0207711_100593163 | 485 |
| 21 | 3300031251 | Ga0265327_10000167 | Ga0265327_1000016758 | 485 |
| 22 | 3300030522 | Ga0307512_10019288 | Ga0307512_100192886 | 486 |
| 23 | 3300031649 | Ga0307514_10034214 | Ga0307514_100342142 | 486 |
| 24 | 3300046515 | Ga0495620_0039067 | Ga0495620_0039067_569_2044 | 486 |
| 25 | 3300006844 | Ga0075428_100010911 | Ga0075428_1000109116 | 488 |
| 26 | 3300006871 | Ga0075434_100048577 | Ga0075434_1000485773 | 488 |
| 27 | 3300006914 | Ga0075436_100002788 | Ga0075436_1000027884 | 488 |
| 28 | 3300044694 | Ga0466963_0007233 | Ga0466963_0007233_2142_3671 | 488 |
| 29 | 3300045976 | Ga0466967_0031041 | Ga0466967_0031041_1297_2826 | 488 |
| 30 | 3300050507 | nmdc:mga05p37_332545_c1 | nmdc:mga05p37_332545_c1_201_1670 | 488 |
| 31 | 3300050515 | nmdc:mga0a205_5160_c1 | nmdc:mga0a205_5160_c1_8389_9858 | 488 |
| 32 | 3300005336 | Ga0070680_100010108 | Ga0070680_1000101083 | 489 |
| 33 | 3300005444 | Ga0070694_100005971 | Ga0070694_1000059715 | 489 |
| 34 | 3300005444 | Ga0070694_100047685 | Ga0070694_1000476853 | 489 |
| 35 | 3300005536 | Ga0070697_100022789 | Ga0070697_1000227896 | 489 |
| 36 | 3300005546 | Ga0070696_100002137 | Ga0070696_10000213714 | 489 |
| 37 | 3300005549 | Ga0070704_100002489 | Ga0070704_1000024894 | 489 |
| 38 | 3300005549 | Ga0070704_100006359 | Ga0070704_1000063593 | 489 |
| 39 | 3300025917 | Ga0207660_10006091 | Ga0207660_100060913 | 489 |
| 40 | 3300005535 | Ga0070684_100009411 | Ga0070684_1000094112 | 490 |
| 41 | 3300025944 | Ga0207661_10018955 | Ga0207661_100189553 | 490 |
| 42 | 3300045976 | Ga0466967_0112131 | Ga0466967_0112131_443_1975 | 490 |
| 43 | 3300003323 | rootH1_10051724 | rootH1_100517242 | 491 |
| 44 | 3300048913 | Ga0496110_0205563 | Ga0496110_0205563_101_1627 | 493 |
| 45 | 3300005530 | Ga0070679_100006112 | Ga0070679_1000061129 | 495 |
| 46 | 3300005577 | Ga0068857_100066208 | Ga0068857_1000662082 | 495 |
| 47 | 3300025921 | Ga0207652_10004665 | Ga0207652_1000466510 | 495 |
| 48 | 3300026116 | Ga0207674_10022719 | Ga0207674_100227193 | 495 |
| 49 | iso_pu_bacteria | 2643221615 | 2644089365 | 495 |
| 50 | iso_pu_bacteria | 2643221657 | 2644319210 | 495 |
| 51 | iso_pu_bacteria | 2643221681 | 2644458139 | 495 |
| 52 | iso_pu_bacteria | 2643221962 | 2645723213 | 495 |
| 53 | iso_pu_bacteria | 2739367898 | 2740169473 | 495 |
| 54 | 3300025927 | Ga0207687_10064024 | Ga0207687_100640242 | 496 |
| 55 | 3300053087 | Ga0500643_000127 | Ga0500643_000127_27725_29218 | 496 |
| 56 | iso_pu_bacteria | 2643221961 | 2645720276 | 496 |
| 57 | iso_pu_bacteria | 8054609563 | 8054612857 | 496 |
| 58 | 3300037471 | Ga0395905_0069761 | Ga0395905_0069761_699_2210 | 497 |
| 59 | iso_pu_bacteria | 2974315732 | 2974317816 | 497 |
| 60 | iso_pu_bacteria | 2984523437 | 2984526025 | 497 |
| 61 | iso_pu_bacteria | 2855386786 | 2855386940 | 498 |
| 62 | 3300006038 | Ga0075365_10031943 | Ga0075365_100319433 | 499 |
| 63 | 3300050491 | nmdc:mga00v17_16729_c1 | nmdc:mga00v17_16729_c1_1889_3397 | 499 |
| 64 | 3300050492 | nmdc:mga0yw44_5659_c1 | nmdc:mga0yw44_5659_c1_1089_2615 | 499 |
| 65 | iso_pu_bacteria | 2990088156 | 2990091833 | 499 |
| 66 | 3300038443 | Ga0395901_0129409 | Ga0395901_0129409_998_2503 | 500 |
| 67 | 3300048904 | Ga0496101_0063446 | Ga0496101_0063446_916_2514 | 500 |
| 68 | 3300048905 | Ga0496102_0044583 | Ga0496102_0044583_1475_3073 | 500 |
| 69 | iso_pu_bacteria | 2643221617 | 2644098544 | 500 |
| 70 | iso_pu_bacteria | 2643221620 | 2644114597 | 500 |
| 71 | iso_pu_bacteria | 2873151551 | 2873152284 | 500 |
| 72 | 3300005618 | Ga0068864_100050374 | Ga0068864_1000503743 | 501 |
| 73 | 3300006048 | Ga0075363_100009430 | Ga0075363_1000094304 | 501 |
| 74 | 3300014325 | Ga0163163_10007670 | Ga0163163_100076706 | 501 |
| 75 | 3300014326 | Ga0157380_10134799 | Ga0157380_101347992 | 501 |
| 76 | 3300026075 | Ga0207708_10062979 | Ga0207708_100629792 | 501 |
| 77 | 3300026118 | Ga0207675_100040519 | Ga0207675_1000405193 | 501 |
| 78 | 3300027866 | Ga0209813_10000470 | Ga0209813_100004706 | 501 |
| 79 | 3300032005 | Ga0307411_10048784 | Ga0307411_100487842 | 501 |
| 80 | 3300035170 | Ga0373943_0074041 | Ga0373943_0074041_166_1680 | 501 |
| 81 | 3300048907 | Ga0496104_0006607 | Ga0496104_0006607_4247_5761 | 501 |
| 82 | 3300048908 | Ga0496105_0023482 | Ga0496105_0023482_3267_4781 | 501 |
| 83 | 3300048911 | Ga0496108_0024231 | Ga0496108_0024231_160_1674 | 501 |
| 84 | 3300048912 | Ga0496109_0006206 | Ga0496109_0006206_1600_3114 | 501 |
| 85 | 3300048913 | Ga0496110_0093248 | Ga0496110_0093248_1170_2684 | 501 |
| 86 | 3300048915 | Ga0496112_0031380 | Ga0496112_0031380_2150_3664 | 501 |
| 87 | 3300050495 | nmdc:mga04h51_11089_c1 | nmdc:mga04h51_11089_c1_448_1986 | 501 |
| 88 | 3300050513 | nmdc:mga0rr50_100139_c1 | nmdc:mga0rr50_100139_c1_433_2001 | 501 |
| 89 | iso_pu_bacteria | 2643221715 | 2644634802 | 501 |
| 90 | iso_pu_bacteria | 2867475112 | 2867475920 | 501 |
| 91 | iso_pu_bacteria | 2902810491 | 2902815515 | 501 |
| 92 | iso_pu_bacteria | 2997451912 | 2997453849 | 501 |
| 93 | iso_pu_bacteria | 3006393351 | 3006399369 | 501 |
| 94 | iso_pu_bacteria | 8054160619 | 8054161952 | 501 |
| 95 | 3300005406 | Ga0070703_10011016 | Ga0070703_100110162 | 502 |
| 96 | 3300005467 | Ga0070706_100021742 | Ga0070706_1000217423 | 502 |
| 97 | 3300005536 | Ga0070697_100156163 | Ga0070697_1001561631 | 502 |
| 98 | 3300044683 | Ga0466965_0003470 | Ga0466965_0003470_2246_3769 | 502 |
| 99 | 3300044694 | Ga0466963_0006599 | Ga0466963_0006599_4704_6275 | 502 |
| 100 | 3300044765 | Ga0466970_0029317 | Ga0466970_0029317_735_2279 | 502 |
| 101 | 3300044842 | Ga0466957_0044096 | Ga0466957_0044096_616_2187 | 502 |
| 102 | 3300061719 | Ga0466962_0025470 | Ga0466962_0025470_1233_2804 | 502 |
| 103 | iso_pu_bacteria | 2867369537 | 2867371819 | 502 |
| 104 | iso_pu_bacteria | 2929212328 | 2929214643 | 502 |
| 105 | 3300005467 | Ga0070706_100195775 | Ga0070706_1001957752 | 503 |
| 106 | 3300006048 | Ga0075363_100011862 | Ga0075363_1000118621 | 503 |
| 107 | 3300006048 | Ga0075363_100023623 | Ga0075363_1000236232 | 503 |
| 108 | 3300026089 | Ga0207648_10021252 | Ga0207648_100212523 | 503 |
| 109 | 3300026118 | Ga0207675_100011015 | Ga0207675_1000110153 | 503 |
| 110 | iso_pu_bacteria | 2738543028 | 2739332308 | 503 |
| 111 | 3300005718 | Ga0068866_10089411 | Ga0068866_100894112 | 504 |
| 112 | 3300025904 | Ga0207647_10018975 | Ga0207647_100189755 | 504 |
| 113 | 3300039437 | Ga0436365_0855910 | Ga0436365_0855910_3214_4740 | 504 |
| 114 | 3300048913 | Ga0496110_0210108 | Ga0496110_0210108_40_1578 | 504 |
| 115 | 3300049586 | Ga0501070_0095965 | Ga0501070_0095965_141_1682 | 504 |
| 116 | 3300053088 | Ga0500644_0000014 | Ga0500644_0000014_23167_24711 | 504 |
| 117 | iso_pu_bacteria | 2939582691 | 2939586507 | 504 |
| 118 | 3300003316 | rootH1_10018158 | rootH1_100181589 | 505 |
| 119 | 3300003320 | rootH2_10040973 | rootH2_100409733 | 505 |
| 120 | 3300006844 | Ga0075428_100052567 | Ga0075428_1000525676 | 505 |
| 121 | 3300006852 | Ga0075433_10115651 | Ga0075433_101156512 | 505 |
| 122 | 3300021384 | Ga0213876_10002170 | Ga0213876_100021703 | 505 |
| 123 | 3300025302 | Ga0207426_1002682 | Ga0207426_10026825 | 505 |
| 124 | 3300041997 | Ga0439431_0009021 | Ga0439431_0009021_93_1622 | 505 |
| 125 | 3300046477 | Ga0495664_0060492 | Ga0495664_0060492_608_2149 | 505 |
| 126 | 3300046529 | Ga0495652_0101716 | Ga0495652_0101716_362_1903 | 505 |
| 127 | 3300046675 | Ga0495657_0017637 | Ga0495657_0017637_3383_4924 | 505 |
| 128 | 3300046689 | Ga0495613_0036742 | Ga0495613_0036742_749_2290 | 505 |
| 129 | 3300050507 | nmdc:mga05p37_117845_c1 | nmdc:mga05p37_117845_c1_713_2251 | 505 |
| 130 | 3300050512 | nmdc:mga0n895_1870_c1 | nmdc:mga0n895_1870_c1_253_1791 | 505 |
| 131 | 3300050515 | nmdc:mga0a205_48811_c1 | nmdc:mga0a205_48811_c1_57_1595 | 505 |
| 132 | 3300005444 | Ga0070694_100035783 | Ga0070694_1000357832 | 507 |
| 133 | 3300005545 | Ga0070695_100015915 | Ga0070695_1000159152 | 507 |
| 134 | 3300035171 | Ga0373946_0052932 | Ga0373946_0052932_83_1621 | 507 |
| 135 | iso_pu_bacteria | 2816332119 | 2816425845 | 507 |
| 136 | 3300005518 | Ga0070699_100000006 | Ga0070699_100000006226 | 508 |
| 137 | 3300005518 | Ga0070699_100057431 | Ga0070699_1000574311 | 508 |
| 138 | 3300021388 | Ga0213875_10007190 | Ga0213875_100071902 | 508 |
| 139 | 3300037853 | Ga0436364_1390044 | Ga0436364_1390044_9842_11392 | 508 |
| 140 | 3300046459 | Ga0495629_0000004 | Ga0495629_0000004_254849_256399 | 509 |
| 141 | 3300053094 | Ga0500566_0007368 | Ga0500566_0007368_954_2504 | 509 |
| 142 | 3300049571 | Ga0501034_0023670 | Ga0501034_0023670_2599_4179 | 510 |
| 143 | 3300009101 | Ga0105247_10000345 | Ga0105247_100003458 | 511 |
| 144 | 3300006846 | Ga0075430_100189785 | Ga0075430_1001897852 | 513 |
| 145 | 3300037068 | Ga0373925_0053219 | Ga0373925_0053219_643_2205 | 513 |
| 146 | 3300046475 | Ga0495639_0012703 | Ga0495639_0012703_1043_2605 | 513 |
| 147 | 3300046526 | Ga0495666_0002245 | Ga0495666_0002245_953_2515 | 513 |
| 148 | 3300046535 | Ga0495586_0001123 | Ga0495586_0001123_793_2355 | 513 |
| 149 | 3300047315 | Ga0495581_0030521 | Ga0495581_0030521_1239_2801 | 513 |
| 150 | 3300050509 | nmdc:mga0qj67_156108_c1 | nmdc:mga0qj67_156108_c1_191_1750 | 513 |
| 151 | 3300048919 | Ga0496116_0084184 | Ga0496116_0084184_323_1930 | 514 |
| 152 | 3300005340 | Ga0070689_100026115 | Ga0070689_1000261153 | 515 |
| 153 | 3300009094 | Ga0111539_10004301 | Ga0111539_100043015 | 515 |
| 154 | 3300025936 | Ga0207670_10009722 | Ga0207670_100097226 | 515 |
| 155 | 3300001990 | JGI24737J22298_10023056 | JGI24737J22298_100230562 | 516 |
| 156 | 3300005367 | Ga0070667_100075100 | Ga0070667_1000751003 | 516 |
| 157 | 3300005548 | Ga0070665_100214021 | Ga0070665_1002140212 | 516 |
| 158 | 3300005577 | Ga0068857_100086114 | Ga0068857_1000861143 | 516 |
| 159 | 3300025904 | Ga0207647_10036931 | Ga0207647_100369311 | 516 |
| 160 | 3300026116 | Ga0207674_10051389 | Ga0207674_100513893 | 516 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1x9n-assembly1.cif.gz_A | crystal structure of human dna ligase i bound to 5'-adenylated, nicked dna | 0.8333 | 6 | 509 |
| 6q1v-assembly1.cif.gz_A | human dna ligase 1 (e592r) bound to an adenylated, hydroxyl terminated dna nick | 0.8307 | 6 | 509 |
| 7l34-assembly1.cif.gz_A | human dna ligase 1 - r641l nicked dna complex | 0.8277 | 6 | 507 |
| 6p0d-assembly1.cif.gz_A | human dna ligase 1 (e346a/e592a) bound to an adenylated, hydroxyl terminated dna nick | 0.8265 | 1 | 509 |
| 7sx5-assembly1.cif.gz_A | crystal structure of ligase i with nick duplexes containing mismatch a:c | 0.8257 | 6 | 509 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P9WNV5_381_507_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.9797 | 380 | 505 | 2.40.50.140 |
| af_P9WNV5_381_507_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.9645 | 380 | 505 | 2.40.50.140 |
| af_Q57635_441_573_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.9615 | 383 | 506 | 2.40.50.140 |
| 3rr5A03 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.959 | 382 | 506 | 2.40.50.140 |
| af_P9WNV5_1_182_1.10.3260.10 | Mainly Alpha;Orthogonal Bundle;DNA ligase i, domain 1;DNA ligase, ATP-dependent, N-terminal domain | 0.9574 | 1 | 183 | 1.10.3260.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A329LEI3-F1-model_v4 | ATP-dependent DNA ligase (EC 6.5.1.1) | 0.9908 | 1 | 122 |
GO:0003677
GO:0003910 GO:0005524 GO:0006281 GO:0006310 |
| AF-A0A7C2BEX7-F1-model_v4 | DNA ligase ATP-dependent C-terminal domain-containing protein | 0.9847 | 401 | 505 |
GO:0003910
GO:0006266 GO:0006273 GO:0006281 GO:0006310 |
| AF-A0A539DSG5-F1-model_v4 | DNA ligase (ATP) (EC 6.5.1.1) | 0.9832 | 415 | 505 |
GO:0003910
GO:0006281 GO:0006310 |
| AF-A0A831Z632-F1-model_v4 | DNA ligase ATP-dependent C-terminal domain-containing protein | 0.9821 | 393 | 507 |
GO:0003910
GO:0006266 GO:0006273 GO:0006281 GO:0006310 |
| AF-A0A534MRC7-F1-model_v4 | DNA ligase ATP-dependent C-terminal domain-containing protein | 0.9819 | 406 | 506 |
GO:0003910
GO:0006266 GO:0006273 GO:0006281 GO:0006310 |
Predicted Structure (AlphaFold2)
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