F233401

General Info

Members Datasets Scaffolds Average Seq Length
159 139 318 203

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8055412473|8055416308
Length 234
Sequence IVEELGEVVRVTETAGDSALVAVRGPLVTSDTRHGDSIAVNGVCLTVVDVAEGVFTADVMGETLRRSALGALRAGDPVNLERAAALGSRLGGHLVQGHVDGVGEIVAREPAAQWETVRFRLPAALARYVVEKGSITIDGVSLTVAEVGADWFAVGLIPTTLKLTTLGARRVGDPVNLEVDVLAKYVERLLGARLAGGDGDLSVRPLPGDAGPAGGVALPGNGGLPGVPATGGVA

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
10 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
11 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
12 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
13 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
14 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
17 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
27 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
28 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
29 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
47 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
48 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
49 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
50 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
51 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
52 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
53 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
54 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
55 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
58 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
61 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
62 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
63 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
64 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
65 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
66 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
67 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
68 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
74 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
75 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
76 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
77 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
78 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
79 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
80 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
81 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
82 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
83 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
84 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
85 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
88 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
89 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
90 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
93 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
94 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
95 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
96 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
97 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
98 2501939600 Micromonospora sp. L5 Isolate Unclassified
99 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
100 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
101 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
102 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
103 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
104 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
105 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
106 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
107 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
108 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
109 2855683550 Micromonospora sp. RP3T Isolate Unclassified
110 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
111 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
112 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
113 2858868258 Micromonospora sp. MH33 Isolate Unclassified
114 2858882152 Micromonospora noduli MED15 Isolate Nodule
115 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
116 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
117 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
118 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
119 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
120 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
121 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
122 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
123 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
124 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
125 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
126 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
127 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
128 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
129 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
130 2902582711 Micromonospora sp. AP08 Isolate Unclassified
131 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
132 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
133 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
134 649633069 Micromonospora sp. L5 Isolate Unclassified
135 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
136 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
137 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
138 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
139 8054734606 Micromonospora hortensis NIE111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 72.96
Metatranscriptomes 0
Isolates 27.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.63
Nodule 3.77
Rhizoplane 5.03
Rhizosphere 64.15
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10048981 3300003203 Bacteria 1428
2 JGI25406J46586_10052179 3300003203 Bacteria 1364
3 Ga0070670_100812267 3300005331 Bacteria 845
4 Ga0070682_100948076 3300005337 Bacteria 711
5 Ga0068868_100139315 3300005338 Bacteria 1990
6 Ga0070668_100006141 3300005347 Bacteria 8905
7 Ga0070668_100244060 3300005347 Bacteria 1489
8 Ga0070671_100541162 3300005355 Bacteria 1004
9 Ga0070678_100713315 3300005456 Bacteria 905
10 Ga0068855_100381833 3300005563 Bacteria 1547
11 Ga0068852_100029608 3300005616 Bacteria 4500
12 Ga0068859_100482792 3300005617 Bacteria 1335
13 Ga0068858_100092030 3300005842 Bacteria 2822
14 Ga0068860_100185109 3300005843 Bacteria 2014
15 Ga0068862_100184819 3300005844 Bacteria 1872
16 Ga0081540_1016037 3300005983 Bacteria 4715
17 Ga0081539_10001842 3300005985 Bacteria 33429
18 Ga0081539_10004900 3300005985 Bacteria 14269
19 Ga0081539_10005116 3300005985 Bacteria 13712
20 Ga0075367_10367730 3300006178 Bacteria 908
21 Ga0068871_100437267 3300006358 Bacteria 1171
22 Ga0075428_100312521 3300006844 Bacteria 1689
23 Ga0075431_100044267 3300006847 Bacteria 4591
24 Ga0097620_100482779 3300006931 Bacteria 1335
25 Ga0105245_10885594 3300009098 Bacteria 934
26 Ga0114129_10414798 3300009147 Bacteria 1772
27 Ga0105241_10561160 3300009174 Bacteria 1026
28 Ga0105242_10471885 3300009176 Bacteria 1187
29 Ga0105237_10914682 3300009545 Bacteria 884
30 Ga0157378_10293543 3300013297 Bacteria 1571
31 Ga0163163_10032922 3300014325 Bacteria 5009
32 Ga0157376_10243709 3300014969 Bacteria 1676
33 Ga0207705_10465400 3300025909 Bacteria 981
34 Ga0207705_10872522 3300025909 Bacteria 697
35 Ga0207660_11121248 3300025917 Bacteria 641
36 Ga0207650_10165713 3300025925 Bacteria 1753
37 Ga0207661_10037476 3300025944 Bacteria 3793
38 Ga0207667_10286228 3300025949 Bacteria 1684
39 Ga0207667_10977130 3300025949 Bacteria 835
40 Ga0207651_11020538 3300025960 Bacteria 740
41 Ga0207668_10001583 3300025972 Bacteria 13306
42 Ga0207668_10169823 3300025972 Bacteria 1709
43 Ga0207658_10030884 3300025986 Bacteria 3799
44 Ga0207658_10073768 3300025986 Bacteria 2591
45 Ga0207703_10028724 3300026035 Bacteria 4387
46 Ga0207639_10112754 3300026041 Bacteria 2220
47 Ga0207678_10066230 3300026067 Bacteria 3102
48 Ga0207676_10453888 3300026095 Bacteria 1209
49 Ga0207675_100074095 3300026118 Bacteria 3186
50 Ga0207683_10215717 3300026121 Bacteria 1748
51 Ga0207698_10169776 3300026142 Bacteria 1919
52 Ga0268265_10127592 3300028380 Bacteria 2108
53 Ga0268264_10802980 3300028381 Bacteria 940
54 Ga0307515_10041850 3300028794 Bacteria 7189
55 Ga0307511_10000625 3300030521 Bacteria 37858
56 Ga0316180_1142239 3300030736 Bacteria 1258
57 Ga0307509_10007679 3300031507 Bacteria 14014
58 Ga0307408_100225297 3300031548 Bacteria 1532
59 Ga0307508_10035526 3300031616 Bacteria 4491
60 Ga0307508_10168946 3300031616 Bacteria 1791
61 Ga0307516_10030151 3300031730 Bacteria 5477
62 Ga0307516_10231109 3300031730 Bacteria 1553
63 Ga0307405_10026564 3300031731 Bacteria 3342
64 Ga0307413_10834860 3300031824 Bacteria 777
65 Ga0307518_10183881 3300031838 Bacteria 1409
66 Ga0307410_10914841 3300031852 Bacteria 752
67 Ga0326468_10000125 3300031889 Bacteria 7203
68 Ga0307406_10017927 3300031901 Bacteria 4130
69 Ga0307406_10142008 3300031901 Bacteria 1701
70 Ga0307409_100059069 3300031995 Bacteria 2982
71 Ga0307409_100391587 3300031995 Bacteria 1324
72 Ga0307416_100086292 3300032002 Bacteria 2675
73 Ga0307416_101083228 3300032002 Bacteria 906
74 Ga0307411_10094297 3300032005 Bacteria 2098
75 Ga0307415_100043056 3300032126 Bacteria 3009
76 Ga0307507_10076579 3300033179 Bacteria 2981
77 Ga0307507_10084678 3300033179 Bacteria 2762
78 Ga0373938_0025126 3300034957 Bacteria 1237
79 Ga0373938_0056085 3300034957 Bacteria 911
80 Ga0373939_0219164 3300035114 Bacteria 728
81 Ga0373941_0001453 3300035115 Bacteria 5006
82 Ga0373942_0000028 3300035207 Bacteria 26905
83 Ga0373962_0001050 3300035242 Bacteria 6419
84 Ga0395900_0340242 3300037418 Bacteria 1476
85 Ga0395898_0073180 3300037466 Bacteria 3310
86 Ga0395905_1210918 3300037471 Bacteria 659
87 Ga0395901_0015084 3300038443 Bacteria 7859
88 Ga0439449_0009077 3300042007 Bacteria 3772
89 Ga0439459_0033925 3300042438 Bacteria 1053
90 Ga0466969_0020836 3300044656 Bacteria 3391
91 Ga0466961_0008686 3300044693 Bacteria 6476
92 Ga0466971_0054360 3300044719 Bacteria 1804
93 Ga0466959_0000299 3300045049 Bacteria 29557
94 Ga0466967_0685259 3300045976 Bacteria 1015
95 Ga0495641_0031121 3300046461 Bacteria 2552
96 Ga0495669_0010746 3300046684 Bacteria 3875
97 Ga0495683_0000192 3300047323 Bacteria 58135
98 Ga0496102_0038367 3300048905 Bacteria 4323
99 Ga0496104_0174664 3300048907 Bacteria 2059
100 Ga0496108_0000149 3300048911 Bacteria 67412
101 Ga0496108_0061587 3300048911 Bacteria 3158
102 Ga0496108_0780130 3300048911 Bacteria 825
103 Ga0496109_0111158 3300048912 Bacteria 2548
104 Ga0496111_0083912 3300048914 Bacteria 2328
105 Ga0496112_0209751 3300048915 Bacteria 1906
106 Ga0496118_0232133 3300048921 Bacteria 1064
107 Ga0496126_0245731 3300048929 Bacteria 1493
108 Ga0501034_0377134 3300049571 Bacteria 1344
109 Ga0501034_0529256 3300049571 Bacteria 1090
110 Ga0501081_0319581 3300049743 Bacteria 1141
111 Ga0501045_0620087 3300049824 Bacteria 800
112 nmdc:mga05p37_184188_c1 3300050507 Bacteria 2539
113 nmdc:mga05p37_900143_c1 3300050507 Bacteria 954
114 nmdc:mga06r32_410_c5 3300050510 Bacteria 9550
115 Ga0495619_0025784 3300053085 Bacteria 3778
116 Ga0495619_0519340 3300053085 Bacteria 818
117 8055416308 8055412473 Bacteria 6257500
118 2501942804 2501939600 Bacteria 6907073
119 2516083109 2515154202 Bacteria 5471270
120 2623588000 2622736626 Bacteria 7181580
121 2753073951 2751185734 Bacteria 8863695
122 2753268957 2751185782 Bacteria 11227053
123 2772643632 2772190715 Bacteria 6959372
124 2831936629 2831935698 Bacteria 5963223
125 2832008534 2832004796 Bacteria 6538017
126 2842889352 2842888712 Bacteria 4279094
127 2855675197 2855670206 Bacteria 7120389
128 2855681976 2855676851 Bacteria 7063653
129 2855686849 2855683550 Bacteria 7134265
130 2856862029 2856858025 Bacteria 7255264
131 2857289207 2857288857 Bacteria 7189066
132 2858850029 2858848962 Bacteria 6963058
133 2858875874 2858868258 Bacteria 7683772
134 2858883459 2858882152 Bacteria 7230291
135 2858891950 2858888857 Bacteria 7060307
136 2858899361 2858895516 Bacteria 7378898
137 2858907819 2858902515 Bacteria 7086037
138 2866065326 2866065130 Bacteria 6518152
139 2867307802 2867302475 Bacteria 7087181
140 2867319116 2867312974 Bacteria 7058875
141 2867320121 2867319477 Bacteria 7069771
142 2867508621 2867507094 Bacteria 6506033
143 2869050846 2869048445 Bacteria 6875584
144 2869067971 2869061728 Bacteria 7112407
145 2869073418 2869068681 Bacteria 7205615
146 2870725781 2870721527 Bacteria 9689237
147 2880492058 2880489317 Bacteria 7096270
148 2880500240 2880495981 Bacteria 7340502
149 2891554577 2891554331 Bacteria 8812224
150 2902586675 2902582711 Bacteria 6187705
151 2929222132 2929219909 Bacteria 6984360
152 2929228791 2929226422 Bacteria 7248583
153 2996227957 2996221748 Bacteria 6799777
154 649812628 649633069 Bacteria 6962533
155 8003876239 8003870546 Bacteria 7396674
156 8047716869 8047710418 Bacteria 11023148
157 8054706785 8054704163 Bacteria 7247792
158 8054731774 8054727385 Bacteria 7558670
159 8054738920 8054734606 Bacteria 6947278
160 JGI25406J46586_10048981
161 JGI25406J46586_10052179
162 Ga0070670_100812267
163 Ga0070682_100948076
164 Ga0068868_100139315
165 Ga0070668_100006141
166 Ga0070668_100244060
167 Ga0070671_100541162
168 Ga0070678_100713315
169 Ga0068855_100381833
170 Ga0068852_100029608
171 Ga0068859_100482792
172 Ga0068858_100092030
173 Ga0068860_100185109
174 Ga0068862_100184819
175 Ga0081540_1016037
176 Ga0081539_10001842
177 Ga0081539_10004900
178 Ga0081539_10005116
179 Ga0075367_10367730
180 Ga0068871_100437267
181 Ga0075428_100312521
182 Ga0075431_100044267
183 Ga0097620_100482779
184 Ga0105245_10885594
185 Ga0114129_10414798
186 Ga0105241_10561160
187 Ga0105242_10471885
188 Ga0105237_10914682
189 Ga0157378_10293543
190 Ga0163163_10032922
191 Ga0157376_10243709
192 Ga0207705_10465400
193 Ga0207705_10872522
194 Ga0207660_11121248
195 Ga0207650_10165713
196 Ga0207661_10037476
197 Ga0207667_10286228
198 Ga0207667_10977130
199 Ga0207651_11020538
200 Ga0207668_10001583
201 Ga0207668_10169823
202 Ga0207658_10030884
203 Ga0207658_10073768
204 Ga0207703_10028724
205 Ga0207639_10112754
206 Ga0207678_10066230
207 Ga0207676_10453888
208 Ga0207675_100074095
209 Ga0207683_10215717
210 Ga0207698_10169776
211 Ga0268265_10127592
212 Ga0268264_10802980
213 Ga0307515_10041850
214 Ga0307511_10000625
215 Ga0316180_1142239
216 Ga0307509_10007679
217 Ga0307408_100225297
218 Ga0307508_10035526
219 Ga0307508_10168946
220 Ga0307516_10030151
221 Ga0307516_10231109
222 Ga0307405_10026564
223 Ga0307413_10834860
224 Ga0307518_10183881
225 Ga0307410_10914841
226 Ga0326468_10000125
227 Ga0307406_10017927
228 Ga0307406_10142008
229 Ga0307409_100059069
230 Ga0307409_100391587
231 Ga0307416_100086292
232 Ga0307416_101083228
233 Ga0307411_10094297
234 Ga0307415_100043056
235 Ga0307507_10076579
236 Ga0307507_10084678
237 Ga0373938_0025126
238 Ga0373938_0056085
239 Ga0373939_0219164
240 Ga0373941_0001453
241 Ga0373942_0000028
242 Ga0373962_0001050
243 Ga0395900_0340242
244 Ga0395898_0073180
245 Ga0395905_1210918
246 Ga0395901_0015084
247 Ga0439449_0009077
248 Ga0439459_0033925
249 Ga0466969_0020836
250 Ga0466961_0008686
251 Ga0466971_0054360
252 Ga0466959_0000299
253 Ga0466967_0685259
254 Ga0495641_0031121
255 Ga0495669_0010746
256 Ga0495683_0000192
257 Ga0496102_0038367
258 Ga0496104_0174664
259 Ga0496108_0000149
260 Ga0496108_0061587
261 Ga0496108_0780130
262 Ga0496109_0111158
263 Ga0496111_0083912
264 Ga0496112_0209751
265 Ga0496118_0232133
266 Ga0496126_0245731
267 Ga0501034_0377134
268 Ga0501034_0529256
269 Ga0501081_0319581
270 Ga0501045_0620087
271 nmdc:mga05p37_184188_c1
272 nmdc:mga05p37_900143_c1
273 nmdc:mga06r32_410_c5
274 Ga0495619_0025784
275 Ga0495619_0519340
276 8055416308
277 2501942804
278 2516083109
279 2623588000
280 2753073951
281 2753268957
282 2772643632
283 2831936629
284 2832008534
285 2842889352
286 2855675197
287 2855681976
288 2855686849
289 2856862029
290 2857289207
291 2858850029
292 2858875874
293 2858883459
294 2858891950
295 2858899361
296 2858907819
297 2866065326
298 2867307802
299 2867319116
300 2867320121
301 2867508621
302 2869050846
303 2869067971
304 2869073418
305 2870725781
306 2880492058
307 2880500240
308 2891554577
309 2902586675
310 2929222132
311 2929228791
312 2996227957
313 649812628
314 8003876239
315 8047716869
316 8054706785
317 8054731774
318 8054738920

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00677

Lum_binding

Lumazine binding domain

96

180

0.99

PF00677

Lum_binding

Lumazine binding domain

1

83

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1pkv-assembly1.cif.gz_B the n-terminal domain of riboflavin synthase in complex with riboflavin 0.8761 1 87
1pkv-assembly1.cif.gz_B the n-terminal domain of riboflavin synthase in complex with riboflavin 0.8666 1 87
4fxu-assembly1.cif.gz_A crystallographic structure of trimeric riboflavin synthase from brucella abortus 0.8551 1 195
3ddy-assembly1.cif.gz_A structure of lumazine protein, an optical transponder of luminescent bacteria 0.8542 1 183
4fxu-assembly1.cif.gz_A crystallographic structure of trimeric riboflavin synthase from brucella abortus 0.8469 1 195
ID Description Score Start End Superfamily
4fxuC02 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3; 0.9164 105 192 2.40.30.20
af_P9WK35_1_88_2.40.30.20 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3; 0.9004 1 88 2.40.30.20
af_Q2FXG0_1_88_2.40.30.20 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3; 0.8988 1 87 2.40.30.20
af_P9WK35_1_88_2.40.30.20 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3; 0.8906 1 88 2.40.30.20
af_A0A1D8PP67_110_218_2.40.30.20 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3; 0.8782 106 196 2.40.30.20
ID Description Score Start End GO Terms
AF-A0A1Q7HAC6-F1-model_v4 Riboflavin synthase (EC 2.5.1.9) 0.8961 9 180 GO:0004746
GO:0009231
AF-A0A2G4H3R9-F1-model_v4 Riboflavin synthase (EC 2.5.1.9) 0.8891 2 183 GO:0004746
GO:0009231
AF-A0A4V1SI75-F1-model_v4 deleted 0.8863 1 180
AF-A0A656WE22-F1-model_v4 deleted 0.8856 10 196
AF-A0A1Q7PNZ7-F1-model_v4 Riboflavin synthase (EC 2.5.1.9) 0.8856 1 187 GO:0004746
GO:0009231

Map