F233325

General Info

Members Datasets Scaffolds Average Seq Length
159 131 79 421

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2593339198|2595319705
Length 454
Sequence CPFIRYRAAEELKLTIDIDLRNKYAGVTKGSVGQVRVLVVGGGGREHAICWALKKSPKISELYCAPGNGGIAAVAECVPIAVDKFAEIAQFALDQSIDLVVIGPDDPLAAGIVDHLESKGLMVYGPRQNAAIIEGSKVFTKQLLKKYNIPTAAYESFEAYEPARAYLDQLRAPYVIKADGLAAGKGVIIAQTLEEADKALQDIMVNKVFGESGNQVVIEEFLTGQEMSILAFVDGETVRPMSPAQDHKAVYDGDQGPNTGGMGTYSPLPHIPQSVIDEAIETIVKPTARAMVAEGRPFRGVLFAGLMLTPDGPKTIEFNARFGDPETQVVLPRLKTDLLDIFLASLNDRLDQMDIEWSDEAAVCVILASPGYPASYPKGLPIEGADQELDALVFHAGTAVNENGQLVTSGGRVIGVTGLGADIAEARQKAYAAADRIYFEGKHMRTDIAKRALV

Samples

Sample ID Description Type Environment
1 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
2 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
3 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
4 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
5 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
6 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
7 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
8 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
9 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
10 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
11 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
12 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
13 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
14 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
15 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
16 2671180694 Paenibacillus sp. A3 Isolate Unclassified
17 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
18 2728368933 Paenibacillus jilunlii DSM 23019 Isolate Rhizosphere
19 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
20 2738543017 Bacillus sp. OV186 Isolate Unclassified
21 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
22 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
23 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
24 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
25 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
26 2857472729 Cohnella sp. R-74144 Isolate Unclassified
27 2857586860 Bacillus sp. R-71935 Isolate Unclassified
28 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
29 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
30 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
31 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
32 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
33 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
34 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
35 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
36 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
37 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
38 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
39 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
40 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
41 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
42 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
43 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
44 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
45 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
46 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
47 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
48 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
49 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
50 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
51 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
52 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
53 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
54 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
55 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
56 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
57 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
58 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
59 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
60 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
61 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
62 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
63 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
64 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
65 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
66 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
67 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
68 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
69 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
70 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
71 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
72 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
73 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
74 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
75 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
76 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
77 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
78 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
79 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
80 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
81 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
82 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
83 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
84 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
85 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
86 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
87 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
88 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
90 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
91 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
94 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
99 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
100 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
101 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
102 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
103 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
104 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
105 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
106 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
107 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
108 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
109 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
110 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
113 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
114 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
115 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
119 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
120 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
121 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
122 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
123 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified
124 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
125 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
126 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
127 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
128 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
129 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
130 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
131 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 48.43
Metatranscriptomes 1.26
Isolates 50.31

Biome Distribution

Category Percentage (%)
Aerial Root 0.63
Bulb 0
Endosphere 13.21
Nodule 0.63
Rhizoplane 1.89
Rhizosphere 42.77
Stem 0
Stem Tuber 0
Unclassified 40.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000807 3300003187 Bacteria 25024
2 JGI25151J46595_10005789 3300003187 Bacteria 6327
3 rootH2_10042327 3300003320 Bacteria 10725
4 Ga0006562J51391_1165937 3300003578 Bacteria 7520
5 Ga0006562J51391_1165939 3300003578 Bacteria 4270
6 Ga0055538_1000402 3300003751 Bacteria 17207
7 Ga0055535_1002264 3300003761 Bacteria 7138
8 Ga0055536_1001247 3300003781 Bacteria 15687
9 Ga0055531_10024145 3300003794 Bacteria 2254
10 Ga0055541_1001561 3300003841 Bacteria 4921
11 Ga0070707_100015916 3300005468 Bacteria 7060
12 Ga0070665_100072046 3300005548 Bacteria 3463
13 Ga0075434_100023663 3300006871 Bacteria 5991
14 Ga0105248_10032071 3300009177 Bacteria 5871
15 Ga0105246_10007191 3300011119 Bacteria 6818
16 Ga0157371_10007950 3300013102 Bacteria 8511
17 Ga0157370_10055526 3300013104 Bacteria 3772
18 Ga0157369_10028462 3300013105 Bacteria 6184
19 Ga0163162_10292327 3300013306 Bacteria 1761
20 Ga0209784_100469 3300025224 Bacteria 16689
21 Ga0209566_100126 3300025225 Bacteria 94445
22 Ga0209566_100411 3300025225 Bacteria 33930
23 Ga0209566_100425 3300025225 Bacteria 32243
24 Ga0209437_100660 3300025233 Bacteria 19349
25 Ga0209258_102061 3300025242 Bacteria 5711
26 Ga0209676_1000895 3300025292 Bacteria 37836
27 Ga0209676_1001272 3300025292 Bacteria 26139
28 Ga0209025_1007532 3300025294 Bacteria 8084
29 Ga0209025_1024368 3300025294 Bacteria 3125
30 Ga0209050_1012880 3300025298 Bacteria 3784
31 Ga0209257_1000881 3300025304 Bacteria 42377
32 Ga0207655_1038101 3300025728 Bacteria 2107
33 Ga0207711_10018207 3300025941 Bacteria 5839
34 Ga0265323_10016430 3300028653 Bacteria 2890
35 Ga0265320_10052872 3300031240 Bacteria 1965
36 Ga0265339_10027043 3300031249 Bacteria 3281
37 Ga0265313_10013094 3300031595 Bacteria 5005
38 Ga0307406_10004183 3300031901 Bacteria 7852
39 Ga0307412_10003382 3300031911 Bacteria 8865
40 Ga0307414_10011556 3300032004 Bacteria 5183
41 Ga0307414_10032733 3300032004 Bacteria 3427
42 Ga0307414_10069239 3300032004 Bacteria 2536
43 Ga0307414_10090090 3300032004 Bacteria 2275
44 Ga0307414_10142761 3300032004 Bacteria 1877
45 Ga0439433_0003506 3300041999 Bacteria 3371
46 Ga0439449_0002016 3300042007 Bacteria 7990
47 Ga0439449_0048744 3300042007 Bacteria 1568
48 Ga0439457_002751 3300042014 Bacteria 4943
49 Ga0439462_0000059 3300042015 Bacteria 16198
50 Ga0495686_0001917 3300047472 Bacteria 20774
51 Ga0496103_0003800 3300048906 Bacteria 9188
52 Ga0496110_0017741 3300048913 Bacteria 5955
53 Ga0496116_0018396 3300048919 Bacteria 5389
54 Ga0496116_0018560 3300048919 Bacteria 5356
55 Ga0496116_0036701 3300048919 Bacteria 3426
56 Ga0496116_0049668 3300048919 Bacteria 2802
57 Ga0496116_0056445 3300048919 Bacteria 2573
58 Ga0496116_0066842 3300048919 Bacteria 2298
59 Ga0496117_0012728 3300048920 Bacteria 7387
60 Ga0496119_0002754 3300048922 Bacteria 18905
61 Ga0496120_0001492 3300048923 Bacteria 27708
62 Ga0496122_0004647 3300048925 Bacteria 16878
63 Ga0496122_0009734 3300048925 Bacteria 10044
64 Ga0496122_0021868 3300048925 Bacteria 5706
65 Ga0496122_0061743 3300048925 Bacteria 2748
66 Ga0496122_0088110 3300048925 Bacteria 2129
67 Ga0496123_0001192 3300048926 Bacteria 38220
68 Ga0496124_0027257 3300048927 Bacteria 5133
69 Ga0496124_0087259 3300048927 Bacteria 2552
70 Ga0496125_0001168 3300048928 Bacteria 39759
71 Ga0496125_0004804 3300048928 Bacteria 15363
72 Ga0496125_0013600 3300048928 Bacteria 7990
73 Ga0496125_0019915 3300048928 Bacteria 6310
74 Ga0496125_0065727 3300048928 Bacteria 2871
75 Ga0496126_0002384 3300048929 Bacteria 25556
76 Ga0496126_0002471 3300048929 Bacteria 24885
77 Ga0496126_0012129 3300048929 Bacteria 8847
78 Ga0500644_0027502 3300053088 Bacteria 1770
79 Ga0500651_0099529 3300053093 Bacteria 1784

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048925 Ga0496122_0088110 Ga0496122_0088110_952_2103 376
2 3300032004 Ga0307414_10032733 Ga0307414_100327334 403
3 3300053088 Ga0500644_0027502 Ga0500644_0027502_315_1589 405
4 3300028653 Ga0265323_10016430 Ga0265323_100164301 410
5 iso_pu_bacteria 646564506 646813973 411
6 iso_pu_bacteria 2791355222 2793184021 412
7 iso_pu_bacteria 2512564039 2512736329 413
8 iso_pu_bacteria 2548877040 2550902230 413
9 iso_pu_bacteria 2563366752 2563928669 413
10 iso_pu_bacteria 2571042143 2571532181 413
11 iso_pu_bacteria 2600255286 2601641403 413
12 iso_pu_bacteria 2643221543 2643736640 413
13 iso_pu_bacteria 2671180694 2673823431 413
14 iso_pu_bacteria 2721755693 2723602196 413
15 iso_pu_bacteria 2728368933 2728532628 413
16 iso_pu_bacteria 2728369359 2730138264 413
17 iso_pu_bacteria 2751185905 2753812848 413
18 iso_pu_bacteria 2802428803 2802439599 413
19 iso_pu_bacteria 2821111986 2821115231 413
20 iso_pu_bacteria 2857453340 2857459475 413
21 iso_pu_bacteria 2857472729 2857474785 413
22 iso_pu_bacteria 2864733723 2864736972 413
23 iso_pu_bacteria 2864997549 2865000729 413
24 iso_pu_bacteria 2865002811 2865007384 413
25 iso_pu_bacteria 2885526491 2885528806 413
26 iso_pu_bacteria 2888578766 2888579711 413
27 iso_pu_bacteria 2889042446 2889043275 413
28 iso_pu_bacteria 2889049205 2889051665 413
29 iso_pu_bacteria 2889276214 2889278277 413
30 iso_pu_bacteria 2889295896 2889298610 413
31 iso_pu_bacteria 2904113452 2904113568 413
32 iso_pu_bacteria 2904162308 2904168346 413
33 iso_pu_bacteria 2904490793 2904496433 413
34 iso_pu_bacteria 2904595352 2904601286 413
35 iso_pu_bacteria 2904755435 2904756109 413
36 iso_pu_bacteria 2907202186 2907207775 413
37 iso_pu_bacteria 2919160200 2919165927 413
38 iso_pu_bacteria 2919425241 2919431448 413
39 iso_pu_bacteria 2925326138 2925329445 413
40 iso_pu_bacteria 2931384279 2931386733 413
41 iso_pu_bacteria 2938649242 2938654110 413
42 iso_pu_bacteria 2939702853 2939706337 413
43 iso_pu_bacteria 2945991243 2945994657 413
44 iso_pu_bacteria 2946053406 2946057452 413
45 iso_pu_bacteria 2968558590 2968563287 413
46 iso_pu_bacteria 2971403814 2971407740 413
47 iso_pu_bacteria 2971410472 2971417653 413
48 iso_pu_bacteria 2980125574 2980129506 413
49 iso_pu_bacteria 2981284811 2981289076 413
50 iso_pu_bacteria 2981289755 2981293787 413
51 iso_pu_bacteria 2981980479 2981984682 413
52 iso_pu_bacteria 2981985349 2981989503 413
53 iso_pu_bacteria 2988225383 2988229132 413
54 iso_pu_bacteria 2996632988 2996634420 413
55 iso_pu_bacteria 2996706504 2996710172 413
56 iso_pu_bacteria 648028048 648168701 413
57 iso_pu_bacteria 8002317523 8002318052 413
58 iso_pu_bacteria 8054465665 8054465999 413
59 iso_pu_bacteria 8056533031 8056536267 413
60 3300003841 Ga0055541_1001561 Ga0055541_10015612 414
61 3300025225 Ga0209566_100126 Ga0209566_10012632 414
62 iso_pu_bacteria 2571042588 2573038118 414
63 iso_pu_bacteria 2576861424 2578335150 414
64 iso_pu_bacteria 2579778775 2580935149 414
65 iso_pu_bacteria 2619619294 2621273370 414
66 iso_pu_bacteria 2971511577 2971516292 414
67 iso_pu_bacteria 2980176882 2980181737 414
68 iso_pu_bacteria 2980182181 2980188417 414
69 iso_pu_bacteria 8055632911 8055638017 414
70 iso_pu_bacteria 2643221699 2644550093 415
71 iso_pu_bacteria 2928972540 2928972764 415
72 iso_pu_bacteria 2977240413 2977242545 415
73 3300048919 Ga0496116_0018396 Ga0496116_0018396_36_1298 416
74 3300048919 Ga0496116_0056445 Ga0496116_0056445_895_2157 416
75 3300048928 Ga0496125_0013600 Ga0496125_0013600_4809_6071 416
76 iso_pu_bacteria 2643221574 2643882981 416
77 iso_pu_bacteria 2643221663 2644353952 416
78 iso_pu_bacteria 2643221699 2644548029 416
79 iso_pu_bacteria 2881636855 2881641623 416
80 iso_pu_bacteria 2929206907 2929211511 416
81 iso_pu_bacteria 2984527788 2984527824 416
82 iso_pu_bacteria 8054795415 8054802146 416
83 iso_pu_bacteria 8057977335 8057981258 416
84 3300011119 Ga0105246_10007191 Ga0105246_100071911 417
85 3300025225 Ga0209566_100411 Ga0209566_10041119 417
86 3300025225 Ga0209566_100425 Ga0209566_10042520 417
87 3300025233 Ga0209437_100660 Ga0209437_10066010 417
88 3300025728 Ga0207655_1038101 Ga0207655_10381011 417
89 3300025941 Ga0207711_10018207 Ga0207711_100182073 417
90 3300041999 Ga0439433_0003506 Ga0439433_0003506_1730_2995 417
91 3300042007 Ga0439449_0002016 Ga0439449_0002016_1778_3043 417
92 3300042007 Ga0439449_0048744 Ga0439449_0048744_22_1287 417
93 3300042014 Ga0439457_002751 Ga0439457_002751_1203_2468 417
94 3300042015 Ga0439462_0000059 Ga0439462_0000059_9307_10572 417
95 3300048919 Ga0496116_0036701 Ga0496116_0036701_1052_2317 417
96 3300048919 Ga0496116_0066842 Ga0496116_0066842_795_2060 417
97 3300048925 Ga0496122_0061743 Ga0496122_0061743_1405_2670 417
98 3300048927 Ga0496124_0087259 Ga0496124_0087259_908_2173 417
99 3300048928 Ga0496125_0001168 Ga0496125_0001168_7332_8597 417
100 3300048928 Ga0496125_0019915 Ga0496125_0019915_4635_5900 417
101 3300048929 Ga0496126_0002384 Ga0496126_0002384_10500_11765 417
102 iso_pu_bacteria 2524023129 2524188004 417
103 iso_pu_bacteria 2593339198 2595319705 417
104 iso_pu_bacteria 2738543017 2739271243 417
105 iso_pu_bacteria 2857586860 2857590209 417
106 iso_pu_bacteria 2939679117 2939683436 417
107 iso_pu_bacteria 8057733483 8057736579 417
108 3300003751 Ga0055538_1000402 Ga0055538_10004025 418
109 3300005468 Ga0070707_100015916 Ga0070707_1000159165 418
110 3300013102 Ga0157371_10007950 Ga0157371_100079505 418
111 3300025224 Ga0209784_100469 Ga0209784_1004693 418
112 3300047472 Ga0495686_0001917 Ga0495686_0001917_1413_2678 418
113 3300048919 Ga0496116_0018560 Ga0496116_0018560_3852_5129 418
114 3300048920 Ga0496117_0012728 Ga0496117_0012728_3749_5026 418
115 3300048922 Ga0496119_0002754 Ga0496119_0002754_11553_12830 418
116 3300048923 Ga0496120_0001492 Ga0496120_0001492_7642_8919 418
117 3300048925 Ga0496122_0021868 Ga0496122_0021868_834_2111 418
118 3300048927 Ga0496124_0027257 Ga0496124_0027257_3437_4714 418
119 3300048928 Ga0496125_0065727 Ga0496125_0065727_773_2050 418
120 3300048929 Ga0496126_0002471 Ga0496126_0002471_8141_9418 418
121 3300048929 Ga0496126_0012129 Ga0496126_0012129_5322_6599 418
122 3300003578 Ga0006562J51391_1165937 Ga0006562J51391_11659372 419
123 3300003578 Ga0006562J51391_1165939 Ga0006562J51391_11659395 419
124 3300003781 Ga0055536_1001247 Ga0055536_10012474 419
125 3300003794 Ga0055531_10024145 Ga0055531_100241452 419
126 3300013104 Ga0157370_10055526 Ga0157370_100555264 419
127 3300013105 Ga0157369_10028462 Ga0157369_100284622 419
128 3300025292 Ga0209676_1000895 Ga0209676_100089525 419
129 3300025298 Ga0209050_1012880 Ga0209050_10128801 419
130 3300025304 Ga0209257_1000881 Ga0209257_100088114 419
131 3300031240 Ga0265320_10052872 Ga0265320_100528722 419
132 3300031249 Ga0265339_10027043 Ga0265339_100270433 419
133 3300031595 Ga0265313_10013094 Ga0265313_100130943 419
134 3300031901 Ga0307406_10004183 Ga0307406_100041836 419
135 3300031911 Ga0307412_10003382 Ga0307412_100033829 419
136 3300032004 Ga0307414_10069239 Ga0307414_100692392 419
137 3300032004 Ga0307414_10090090 Ga0307414_100900903 419
138 3300048919 Ga0496116_0049668 Ga0496116_0049668_241_1518 419
139 3300048925 Ga0496122_0004647 Ga0496122_0004647_1307_2581 419
140 3300048926 Ga0496123_0001192 Ga0496123_0001192_183_1457 419
141 3300048928 Ga0496125_0004804 Ga0496125_0004804_96_1373 419
142 3300053093 Ga0500651_0099529 Ga0500651_0099529_475_1752 419
143 3300005548 Ga0070665_100072046 Ga0070665_1000720462 420
144 3300009177 Ga0105248_10032071 Ga0105248_100320713 420
145 3300032004 Ga0307414_10011556 Ga0307414_100115561 420
146 3300032004 Ga0307414_10142761 Ga0307414_101427612 420
147 3300048925 Ga0496122_0009734 Ga0496122_0009734_4556_5824 420
148 3300003187 JGI25151J46595_10000807 JGI25151J46595_100008073 421
149 3300003187 JGI25151J46595_10005789 JGI25151J46595_100057894 421
150 3300003320 rootH2_10042327 rootH2_100423276 421
151 3300003761 Ga0055535_1002264 Ga0055535_10022646 421
152 3300006871 Ga0075434_100023663 Ga0075434_1000236635 421
153 3300013306 Ga0163162_10292327 Ga0163162_102923271 421
154 3300025242 Ga0209258_102061 Ga0209258_1020612 421
155 3300025292 Ga0209676_1001272 Ga0209676_100127214 421
156 3300025294 Ga0209025_1007532 Ga0209025_10075324 421
157 3300025294 Ga0209025_1024368 Ga0209025_10243682 421
158 3300048906 Ga0496103_0003800 Ga0496103_0003800_338_1621 421
159 3300048913 Ga0496110_0017741 Ga0496110_0017741_4639_5922 421

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01071

GARS_A

Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

135

327

1

PF02844

GARS_N

Phosphoribosylglycinamide synthetase, N domain

35

134

0.99

PF02843

GARS_C

Phosphoribosylglycinamide synthetase, C domain

362

451

0.94

PF02655

ATP-grasp_3

ATP-grasp domain

135

325

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xd4-assembly1.cif.gz_A nucleotide-bound structures of bacillus subtilis glycinamide ribonucleotide synthetase 0.9758 1 421
2yw2-assembly1.cif.gz_A crystal structure of gar synthetase from aquifex aeolicus in complex with atp 0.9727 1 418
2yw2-assembly1.cif.gz_A crystal structure of gar synthetase from aquifex aeolicus in complex with atp 0.9636 1 418
3lp8-assembly1.cif.gz_A crystal structure of phosphoribosylamine-glycine ligase from ehrlichia chaffeensis 0.9617 1 412
2qk4-assembly1.cif.gz_A human glycinamide ribonucleotide synthetase 0.9417 2 419
ID Description Score Start End Superfamily
3lp8A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9805 3 93 3.40.50.20
5vevA02 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;ATP-grasp fold, A domain 0.9787 119 188 3.30.1490.20
5vevB04 Alpha Beta;Alpha-Beta Complex;Glycinamide Ribonucleotide Synthetase; Chain A, domain 4;Phosphoribosylglycinamide synthetase, C-terminal domain 0.9736 326 416 3.90.600.10
3lp8A04 Alpha Beta;Alpha-Beta Complex;Glycinamide Ribonucleotide Synthetase; Chain A, domain 4;Phosphoribosylglycinamide synthetase, C-terminal domain 0.9709 326 412 3.90.600.10
2ip4B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9666 3 93 3.40.50.20
ID Description Score Start End GO Terms
AF-A0A352Y4J7-F1-model_v4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.9986 1 87 GO:0004637
GO:0009113
AF-D6TVI3-F1-model_v4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.9914 5 119 GO:0004637
GO:0009113
AF-A0A7X8LEI6-F1-model_v4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.991 1 110 GO:0004637
GO:0009113
AF-A0A359G5K1-F1-model_v4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.9895 1 105 GO:0004637
GO:0009113
AF-A0A7V5HI60-F1-model_v4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) 0.987 1 121 GO:0004637
GO:0009113

Feature Viewer

pLDDT pTM Quality
91.77 0.92 High
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Predicted Structure (AlphaFold2)

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