F232974
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 159 | 104 | 318 | 443 |
Family's Representative Sequence
| Representative Sequence | 3300046664|Ga0495659_0014555|Ga0495659_0014555_830_2365 |
| Length | 511 |
| Sequence | MSLDDTAPRSFRLPLALLVLAVVALSAARLWPAFTPATGILLAALGFGGLLARWVPSQRYLYIGLAAVVAVVSLLLVLQPQVPYLLIGSRWLALTFLIAIAFARGSLTTWILASMVIGAEIGHDFPAFGVSLQLLSQIFLKMIKTIIAPLLFGTLVVGIAGHSNLRQVGRMGIKALIYFEVVTTLALFIGLGAINLTRAGHGVSPPSQVAELPATQSQTFSDSMLHVFPENIAKSVAEGQVLQVVVFSIFFGIALAMLSEEKRRPMLLFAESLSETMFKFTNLVMLFAPIGVGAAMAYTVGNMGLGVLKNLFMLLGTLYAALTVFLLVVLLPVALLFRVPVRRFVGAIAAPVSIAFATTSSEAALPRAMEAMESIGVPRKIVAFVMPTGYSFNLDGSTLYLALATIFVAQAADIPLTFGQQLFMVFTLMLTSKGVAGVPRATLVILLGTAASFNLPAWPIFLIVGIDALMDMARTSVNVIGNCLATVVVAKWEGEFGTEQPSETVLEAVRG |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300046664 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere | Metagenome | Rhizosphere |
| 2 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 3 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 5 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 7 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 8 | 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Metagenome | Rhizosphere |
| 9 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 12 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 13 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 14 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 15 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 17 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 18 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 20 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 21 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 22 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 23 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 24 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 25 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 26 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 27 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 28 | 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Metagenome | Rhizosphere |
| 29 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 32 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 33 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 34 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 35 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 36 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300027671 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 56 | 3300030731 | Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 | Metagenome | Rhizosphere |
| 57 | 3300030732 | Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 | Metagenome | Rhizosphere |
| 58 | 3300030742 | Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 | Metagenome | Rhizosphere |
| 59 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 60 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 61 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 62 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 63 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 64 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 65 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 66 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 67 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 68 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 69 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 70 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 71 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300046690 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 75 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 76 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 77 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 78 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 79 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 80 | 3300049663 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought | Metagenome | Rhizosphere |
| 81 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 82 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 83 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 84 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 85 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 86 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300053104 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere | Metagenome | Endosphere |
| 88 | 3300059421 | Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 | Metagenome | Rhizosphere |
| 89 | 3300059426 | Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 | Metagenome | Rhizosphere |
| 90 | 2721755487 | Sphingobacterium sp. B29 | Isolate | Rhizosphere |
| 91 | 2839989709 | Pontibacter arcticus 2b14 | Isolate | Unclassified |
| 92 | 2842903701 | Olivibacter sp. R-72191 | Isolate | Unclassified |
| 93 | 2881247448 | Flavobacterium beibuense RSKm HC5 | Isolate | Rhizosphere |
| 94 | 2890737413 | Parapedobacter sp. SGR-10 | Isolate | Rhizosphere |
| 95 | 2896317667 | Sphingobacterium sp. SGR-19 | Isolate | Rhizosphere |
| 96 | 2896344016 | Sphingobacterium sp. SGL-16 | Isolate | Rhizosphere |
| 97 | 2898713307 | Sphingobacterium sp. SGG-5 | Isolate | Rhizosphere |
| 98 | 2902048731 | Pedobacter ureilyticus THG-T11 | Isolate | Rhizosphere |
| 99 | 2904780799 | Sphingobacterium sp. 1304 | Isolate | Rhizosphere |
| 100 | 2910245624 | Adhaeribacter radiodurans KUDC8001 | Isolate | Rhizosphere |
| 101 | 2919177583 | Sphingobacterium sp. 2149 | Isolate | Rhizosphere |
| 102 | 2919509842 | Flavobacterium arsenatis 3773 | Isolate | Unclassified |
| 103 | 3003233435 | Sphingobacterium shayense CrR18 | Isolate | Unclassified |
| 104 | 8036736890 | Flavobacterium dauae TCH3-2 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.94 |
| Metatranscriptomes | 0 |
| Isolates | 10.06 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0.63 |
| Nodule | 0 |
| Rhizoplane | 1.26 |
| Rhizosphere | 93.08 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 8.81 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0495659_0014555 | 3300046664 | Bacteria | 2576 |
| 2 | Ga0065704_10003704 | 3300005289 | Bacteria | 3862 |
| 3 | Ga0070658_10033888 | 3300005327 | Bacteria | 4109 |
| 4 | Ga0070658_10079593 | 3300005327 | Unclassified | 2691 |
| 5 | Ga0070683_100015643 | 3300005329 | Bacteria | 6669 |
| 6 | Ga0070683_100148174 | 3300005329 | Bacteria | 2224 |
| 7 | Ga0070666_10052353 | 3300005335 | Bacteria | 2751 |
| 8 | Ga0070680_100139829 | 3300005336 | Bacteria | 2030 |
| 9 | Ga0070713_100237684 | 3300005436 | Bacteria | 1658 |
| 10 | Ga0070710_10016094 | 3300005437 | Bacteria | 3799 |
| 11 | Ga0070708_100035302 | 3300005445 | Bacteria | 4355 |
| 12 | Ga0070708_100114294 | 3300005445 | Bacteria | 2484 |
| 13 | Ga0070678_100054465 | 3300005456 | Unclassified | 2915 |
| 14 | Ga0070681_10018296 | 3300005458 | Bacteria | 7003 |
| 15 | Ga0070706_100000110 | 3300005467 | Bacteria | 99154 |
| 16 | Ga0070706_100027902 | 3300005467 | Bacteria | 5192 |
| 17 | Ga0070707_100000926 | 3300005468 | Bacteria | 29110 |
| 18 | Ga0070707_100012763 | 3300005468 | Bacteria | 7845 |
| 19 | Ga0070707_100021030 | 3300005468 | Bacteria | 6162 |
| 20 | Ga0070707_100032954 | 3300005468 | Bacteria | 4938 |
| 21 | Ga0070698_100003770 | 3300005471 | Bacteria | 16654 |
| 22 | Ga0070698_100045913 | 3300005471 | Bacteria | 4469 |
| 23 | Ga0070699_100017234 | 3300005518 | Bacteria | 6204 |
| 24 | Ga0070699_100167961 | 3300005518 | Bacteria | 1944 |
| 25 | Ga0070679_100032589 | 3300005530 | Bacteria | 5155 |
| 26 | Ga0070679_100107595 | 3300005530 | Bacteria | 2774 |
| 27 | Ga0070697_100000777 | 3300005536 | Bacteria | 23935 |
| 28 | Ga0070697_100009852 | 3300005536 | Bacteria | 7453 |
| 29 | Ga0070697_100060090 | 3300005536 | Bacteria | 3097 |
| 30 | Ga0070697_100069004 | 3300005536 | Bacteria | 2895 |
| 31 | Ga0070693_100004056 | 3300005547 | Bacteria | 6894 |
| 32 | Ga0070704_100019691 | 3300005549 | Bacteria | 4340 |
| 33 | Ga0068855_100020293 | 3300005563 | Bacteria | 7974 |
| 34 | Ga0068855_100119302 | 3300005563 | Bacteria | 3020 |
| 35 | Ga0068852_100100046 | 3300005616 | Bacteria | 2615 |
| 36 | Ga0068851_10000113 | 3300005834 | Bacteria | 42861 |
| 37 | Ga0068862_100230506 | 3300005844 | Unclassified | 1680 |
| 38 | Ga0075428_100154926 | 3300006844 | Unclassified | 2489 |
| 39 | Ga0075431_100208721 | 3300006847 | Bacteria | 1996 |
| 40 | Ga0075433_10000123 | 3300006852 | Bacteria | 39196 |
| 41 | Ga0075433_10001648 | 3300006852 | Bacteria | 16585 |
| 42 | Ga0075434_100005380 | 3300006871 | Bacteria | 11648 |
| 43 | Ga0075434_100010773 | 3300006871 | Bacteria | 8586 |
| 44 | Ga0099794_10000055 | 3300007265 | Bacteria | 43614 |
| 45 | Ga0111539_10006893 | 3300009094 | Bacteria | 14595 |
| 46 | Ga0111539_10018655 | 3300009094 | Bacteria | 8591 |
| 47 | Ga0114129_10013578 | 3300009147 | Bacteria | 11605 |
| 48 | Ga0114129_10118304 | 3300009147 | Unclassified | 3650 |
| 49 | Ga0114129_10156236 | 3300009147 | Bacteria | 3119 |
| 50 | Ga0105243_10000008 | 3300009148 | Bacteria | 390270 |
| 51 | Ga0105238_10192874 | 3300009551 | Bacteria | 2013 |
| 52 | Ga0157373_10021324 | 3300013100 | Unclassified | 4705 |
| 53 | Ga0157371_10016925 | 3300013102 | Bacteria | 5429 |
| 54 | Ga0157371_10038453 | 3300013102 | Bacteria | 3423 |
| 55 | Ga0157371_10134261 | 3300013102 | Bacteria | 1762 |
| 56 | Ga0157370_10022217 | 3300013104 | Bacteria | 6313 |
| 57 | Ga0157369_10045717 | 3300013105 | Unclassified | 4760 |
| 58 | Ga0157369_10202582 | 3300013105 | Bacteria | 2082 |
| 59 | Ga0157372_10032503 | 3300013307 | Bacteria | 5723 |
| 60 | Ga0157372_10055977 | 3300013307 | Unclassified | 4406 |
| 61 | Ga0157372_10097065 | 3300013307 | Bacteria | 3360 |
| 62 | Ga0157380_10009002 | 3300014326 | Bacteria | 7134 |
| 63 | Ga0207656_10001008 | 3300025321 | Bacteria | 9204 |
| 64 | Ga0207692_10029980 | 3300025898 | Bacteria | 2590 |
| 65 | Ga0207680_10038930 | 3300025903 | Bacteria | 2755 |
| 66 | Ga0207705_10015008 | 3300025909 | Bacteria | 5570 |
| 67 | Ga0207705_10048817 | 3300025909 | Bacteria | 3046 |
| 68 | Ga0207705_10151627 | 3300025909 | Bacteria | 1737 |
| 69 | Ga0207684_10000125 | 3300025910 | Bacteria | 141210 |
| 70 | Ga0207684_10011295 | 3300025910 | Bacteria | 7819 |
| 71 | Ga0207684_10043217 | 3300025910 | Bacteria | 3820 |
| 72 | Ga0207684_10054966 | 3300025910 | Bacteria | 3378 |
| 73 | Ga0207707_10026876 | 3300025912 | Bacteria | 5030 |
| 74 | Ga0207707_10074784 | 3300025912 | Bacteria | 2955 |
| 75 | Ga0207652_10000093 | 3300025921 | Bacteria | 98248 |
| 76 | Ga0207652_10007964 | 3300025921 | Bacteria | 8506 |
| 77 | Ga0207652_10082145 | 3300025921 | Bacteria | 2819 |
| 78 | Ga0207646_10000005 | 3300025922 | Bacteria | 523896 |
| 79 | Ga0207646_10002121 | 3300025922 | Bacteria | 23739 |
| 80 | Ga0207646_10047945 | 3300025922 | Bacteria | 3830 |
| 81 | Ga0207646_10167454 | 3300025922 | Unclassified | 1984 |
| 82 | Ga0207709_10000006 | 3300025935 | Bacteria | 800946 |
| 83 | Ga0207661_10099802 | 3300025944 | Bacteria | 2436 |
| 84 | Ga0207667_10055144 | 3300025949 | Unclassified | 4179 |
| 85 | Ga0207640_10124741 | 3300025981 | Bacteria | 1852 |
| 86 | Ga0207702_10157048 | 3300026078 | Bacteria | 2074 |
| 87 | Ga0207674_10050086 | 3300026116 | Bacteria | 4269 |
| 88 | Ga0207698_10130460 | 3300026142 | Bacteria | 2147 |
| 89 | Ga0209588_1000012 | 3300027671 | Bacteria | 141363 |
| 90 | Ga0207428_10024194 | 3300027907 | Bacteria | 5102 |
| 91 | Ga0316177_1156263 | 3300030731 | Unclassified | 3389 |
| 92 | Ga0316176_1046024 | 3300030732 | Bacteria | 10598 |
| 93 | Ga0316183_1108470 | 3300030742 | Bacteria | 14315 |
| 94 | Ga0307408_100000958 | 3300031548 | Bacteria | 22408 |
| 95 | Ga0307408_100001471 | 3300031548 | Bacteria | 17472 |
| 96 | Ga0307408_100012021 | 3300031548 | Bacteria | 5731 |
| 97 | Ga0307410_10081786 | 3300031852 | Bacteria | 2270 |
| 98 | Ga0307412_10004285 | 3300031911 | Bacteria | 7960 |
| 99 | Ga0307412_10019145 | 3300031911 | Bacteria | 4137 |
| 100 | Ga0307412_10092469 | 3300031911 | Bacteria | 2120 |
| 101 | Ga0307416_100018061 | 3300032002 | Bacteria | 4957 |
| 102 | Ga0307414_10000016 | 3300032004 | Bacteria | 249029 |
| 103 | Ga0307414_10051333 | 3300032004 | Bacteria | 2862 |
| 104 | Ga0307414_10054470 | 3300032004 | Bacteria | 2796 |
| 105 | Ga0307414_10059172 | 3300032004 | Bacteria | 2704 |
| 106 | Ga0395899_0095826 | 3300037312 | Bacteria | 2146 |
| 107 | Ga0395898_0169361 | 3300037466 | Unclassified | 2088 |
| 108 | Ga0395905_0024228 | 3300037471 | Bacteria | 5728 |
| 109 | Ga0395905_0040384 | 3300037471 | Bacteria | 4377 |
| 110 | Ga0395905_0045497 | 3300037471 | Bacteria | 4116 |
| 111 | Ga0451577_0153944 | 3300042876 | Bacteria | 2069 |
| 112 | Ga0453683_0008873 | 3300044673 | Bacteria | 6730 |
| 113 | Ga0466959_0023943 | 3300045049 | Bacteria | 4521 |
| 114 | Ga0451576_0001327 | 3300045051 | Bacteria | 42784 |
| 115 | Ga0451576_0027059 | 3300045051 | Bacteria | 6163 |
| 116 | Ga0495629_0011653 | 3300046459 | Bacteria | 6381 |
| 117 | Ga0495624_0117149 | 3300046690 | Bacteria | 1637 |
| 118 | Ga0495676_0078445 | 3300047321 | Bacteria | 2515 |
| 119 | Ga0496110_0082727 | 3300048913 | Bacteria | 2863 |
| 120 | Ga0496111_0000883 | 3300048914 | Bacteria | 16302 |
| 121 | Ga0496116_0009394 | 3300048919 | Bacteria | 8338 |
| 122 | Ga0496117_0002807 | 3300048920 | Bacteria | 21240 |
| 123 | Ga0496122_0004057 | 3300048925 | Bacteria | 18589 |
| 124 | Ga0496123_0045512 | 3300048926 | Bacteria | 2988 |
| 125 | Ga0501223_000666 | 3300049663 | Bacteria | 8224 |
| 126 | nmdc:mga05p37_132730_c1 | 3300050507 | Bacteria | 3055 |
| 127 | nmdc:mga05p37_137530_c1 | 3300050507 | Bacteria | 2994 |
| 128 | nmdc:mga05p37_14048_c1 | 3300050507 | Bacteria | 9606 |
| 129 | nmdc:mga05p37_247169_c1 | 3300050507 | Bacteria | 2141 |
| 130 | nmdc:mga05p37_435058_c1 | 3300050507 | Unclassified | 1523 |
| 131 | nmdc:mga05p37_82448_c1 | 3300050507 | Bacteria | 3962 |
| 132 | nmdc:mga08y16_144420_c1 | 3300050511 | Bacteria | 2473 |
| 133 | nmdc:mga08y16_39655_c1 | 3300050511 | Unclassified | 4941 |
| 134 | nmdc:mga0n895_1634_c1 | 3300050512 | Bacteria | 16940 |
| 135 | nmdc:mga0n895_5247_c1 | 3300050512 | Bacteria | 10796 |
| 136 | nmdc:mga0n895_89251_c1 | 3300050512 | Bacteria | 3083 |
| 137 | nmdc:mga0rr50_30676_c1 | 3300050513 | Bacteria | 3809 |
| 138 | nmdc:mga0a205_179_c1 | 3300050515 | Bacteria | 37805 |
| 139 | nmdc:mga0a205_9946_c1 | 3300050515 | Bacteria | 8726 |
| 140 | Ga0495601_0068107 | 3300053077 | Bacteria | 2268 |
| 141 | Ga0500556_0007274 | 3300053104 | Bacteria | 3163 |
| 142 | Ga0590071_000067 | 3300059421 | Bacteria | 27870 |
| 143 | Ga0590077_006734 | 3300059426 | Bacteria | 2352 |
| 144 | 2722728790 | 2721755487 | Bacteria | 6357185 |
| 145 | 2839992005 | 2839989709 | Bacteria | 3773432 |
| 146 | 2842909437 | 2842903701 | Bacteria | 6986368 |
| 147 | 2881248696 | 2881247448 | Bacteria | 3717788 |
| 148 | 2890740379 | 2890737413 | Bacteria | 4269751 |
| 149 | 2896317714 | 2896317667 | Bacteria | 4606601 |
| 150 | 2896346419 | 2896344016 | Bacteria | 3811746 |
| 151 | 2898714895 | 2898713307 | Bacteria | 4110805 |
| 152 | 2898715045 | 2898713307 | Bacteria | 4110805 |
| 153 | 2902049958 | 2902048731 | Bacteria | 4976191 |
| 154 | 2904785370 | 2904780799 | Bacteria | 5840761 |
| 155 | 2910249968 | 2910245624 | Bacteria | 6935613 |
| 156 | 2919179152 | 2919177583 | Bacteria | 5641607 |
| 157 | 2919513368 | 2919509842 | Bacteria | 4104664 |
| 158 | 3003235397 | 3003233435 | Bacteria | 4458031 |
| 159 | 8036736931 | 8036736890 | Bacteria | 2944828 |
| 160 | Ga0495659_0014555 | |||
| 161 | Ga0065704_10003704 | |||
| 162 | Ga0070658_10033888 | |||
| 163 | Ga0070658_10079593 | |||
| 164 | Ga0070683_100015643 | |||
| 165 | Ga0070683_100148174 | |||
| 166 | Ga0070666_10052353 | |||
| 167 | Ga0070680_100139829 | |||
| 168 | Ga0070713_100237684 | |||
| 169 | Ga0070710_10016094 | |||
| 170 | Ga0070708_100035302 | |||
| 171 | Ga0070708_100114294 | |||
| 172 | Ga0070678_100054465 | |||
| 173 | Ga0070681_10018296 | |||
| 174 | Ga0070706_100000110 | |||
| 175 | Ga0070706_100027902 | |||
| 176 | Ga0070707_100000926 | |||
| 177 | Ga0070707_100012763 | |||
| 178 | Ga0070707_100021030 | |||
| 179 | Ga0070707_100032954 | |||
| 180 | Ga0070698_100003770 | |||
| 181 | Ga0070698_100045913 | |||
| 182 | Ga0070699_100017234 | |||
| 183 | Ga0070699_100167961 | |||
| 184 | Ga0070679_100032589 | |||
| 185 | Ga0070679_100107595 | |||
| 186 | Ga0070697_100000777 | |||
| 187 | Ga0070697_100009852 | |||
| 188 | Ga0070697_100060090 | |||
| 189 | Ga0070697_100069004 | |||
| 190 | Ga0070693_100004056 | |||
| 191 | Ga0070704_100019691 | |||
| 192 | Ga0068855_100020293 | |||
| 193 | Ga0068855_100119302 | |||
| 194 | Ga0068852_100100046 | |||
| 195 | Ga0068851_10000113 | |||
| 196 | Ga0068862_100230506 | |||
| 197 | Ga0075428_100154926 | |||
| 198 | Ga0075431_100208721 | |||
| 199 | Ga0075433_10000123 | |||
| 200 | Ga0075433_10001648 | |||
| 201 | Ga0075434_100005380 | |||
| 202 | Ga0075434_100010773 | |||
| 203 | Ga0099794_10000055 | |||
| 204 | Ga0111539_10006893 | |||
| 205 | Ga0111539_10018655 | |||
| 206 | Ga0114129_10013578 | |||
| 207 | Ga0114129_10118304 | |||
| 208 | Ga0114129_10156236 | |||
| 209 | Ga0105243_10000008 | |||
| 210 | Ga0105238_10192874 | |||
| 211 | Ga0157373_10021324 | |||
| 212 | Ga0157371_10016925 | |||
| 213 | Ga0157371_10038453 | |||
| 214 | Ga0157371_10134261 | |||
| 215 | Ga0157370_10022217 | |||
| 216 | Ga0157369_10045717 | |||
| 217 | Ga0157369_10202582 | |||
| 218 | Ga0157372_10032503 | |||
| 219 | Ga0157372_10055977 | |||
| 220 | Ga0157372_10097065 | |||
| 221 | Ga0157380_10009002 | |||
| 222 | Ga0207656_10001008 | |||
| 223 | Ga0207692_10029980 | |||
| 224 | Ga0207680_10038930 | |||
| 225 | Ga0207705_10015008 | |||
| 226 | Ga0207705_10048817 | |||
| 227 | Ga0207705_10151627 | |||
| 228 | Ga0207684_10000125 | |||
| 229 | Ga0207684_10011295 | |||
| 230 | Ga0207684_10043217 | |||
| 231 | Ga0207684_10054966 | |||
| 232 | Ga0207707_10026876 | |||
| 233 | Ga0207707_10074784 | |||
| 234 | Ga0207652_10000093 | |||
| 235 | Ga0207652_10007964 | |||
| 236 | Ga0207652_10082145 | |||
| 237 | Ga0207646_10000005 | |||
| 238 | Ga0207646_10002121 | |||
| 239 | Ga0207646_10047945 | |||
| 240 | Ga0207646_10167454 | |||
| 241 | Ga0207709_10000006 | |||
| 242 | Ga0207661_10099802 | |||
| 243 | Ga0207667_10055144 | |||
| 244 | Ga0207640_10124741 | |||
| 245 | Ga0207702_10157048 | |||
| 246 | Ga0207674_10050086 | |||
| 247 | Ga0207698_10130460 | |||
| 248 | Ga0209588_1000012 | |||
| 249 | Ga0207428_10024194 | |||
| 250 | Ga0316177_1156263 | |||
| 251 | Ga0316176_1046024 | |||
| 252 | Ga0316183_1108470 | |||
| 253 | Ga0307408_100000958 | |||
| 254 | Ga0307408_100001471 | |||
| 255 | Ga0307408_100012021 | |||
| 256 | Ga0307410_10081786 | |||
| 257 | Ga0307412_10004285 | |||
| 258 | Ga0307412_10019145 | |||
| 259 | Ga0307412_10092469 | |||
| 260 | Ga0307416_100018061 | |||
| 261 | Ga0307414_10000016 | |||
| 262 | Ga0307414_10051333 | |||
| 263 | Ga0307414_10054470 | |||
| 264 | Ga0307414_10059172 | |||
| 265 | Ga0395899_0095826 | |||
| 266 | Ga0395898_0169361 | |||
| 267 | Ga0395905_0024228 | |||
| 268 | Ga0395905_0040384 | |||
| 269 | Ga0395905_0045497 | |||
| 270 | Ga0451577_0153944 | |||
| 271 | Ga0453683_0008873 | |||
| 272 | Ga0466959_0023943 | |||
| 273 | Ga0451576_0001327 | |||
| 274 | Ga0451576_0027059 | |||
| 275 | Ga0495629_0011653 | |||
| 276 | Ga0495624_0117149 | |||
| 277 | Ga0495676_0078445 | |||
| 278 | Ga0496110_0082727 | |||
| 279 | Ga0496111_0000883 | |||
| 280 | Ga0496116_0009394 | |||
| 281 | Ga0496117_0002807 | |||
| 282 | Ga0496122_0004057 | |||
| 283 | Ga0496123_0045512 | |||
| 284 | Ga0501223_000666 | |||
| 285 | nmdc:mga05p37_132730_c1 | |||
| 286 | nmdc:mga05p37_137530_c1 | |||
| 287 | nmdc:mga05p37_14048_c1 | |||
| 288 | nmdc:mga05p37_247169_c1 | |||
| 289 | nmdc:mga05p37_435058_c1 | |||
| 290 | nmdc:mga05p37_82448_c1 | |||
| 291 | nmdc:mga08y16_144420_c1 | |||
| 292 | nmdc:mga08y16_39655_c1 | |||
| 293 | nmdc:mga0n895_1634_c1 | |||
| 294 | nmdc:mga0n895_5247_c1 | |||
| 295 | nmdc:mga0n895_89251_c1 | |||
| 296 | nmdc:mga0rr50_30676_c1 | |||
| 297 | nmdc:mga0a205_179_c1 | |||
| 298 | nmdc:mga0a205_9946_c1 | |||
| 299 | Ga0495601_0068107 | |||
| 300 | Ga0500556_0007274 | |||
| 301 | Ga0590071_000067 | |||
| 302 | Ga0590077_006734 | |||
| 303 | 2722728790 | |||
| 304 | 2839992005 | |||
| 305 | 2842909437 | |||
| 306 | 2881248696 | |||
| 307 | 2890740379 | |||
| 308 | 2896317714 | |||
| 309 | 2896346419 | |||
| 310 | 2898714895 | |||
| 311 | 2898715045 | |||
| 312 | 2902049958 | |||
| 313 | 2904785370 | |||
| 314 | 2910249968 | |||
| 315 | 2919179152 | |||
| 316 | 2919513368 | |||
| 317 | 3003235397 | |||
| 318 | 8036736931 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6ctf-assembly1.cif.gz_B | crystal structure of gltph fast mutant - r276s/m395r | 0.8757 | 56 | 460 |
| 6x15-assembly1.cif.gz_B | inward-facing state of the glutamate transporter homologue gltph in complex with l-aspartate and sodium ions | 0.8739 | 51 | 462 |
| 6x15-assembly1.cif.gz_C | inward-facing state of the glutamate transporter homologue gltph in complex with l-aspartate and sodium ions | 0.8739 | 51 | 462 |
| 3v8g-assembly2.cif.gz_E | crystal structure of an asymmetric trimer of a glutamate transporter homologue (gltph) | 0.873 | 56 | 460 |
| 3kbc-assembly1.cif.gz_B | crystal structure of gltph k55c-a364c mutant crosslinked with divalent mercury | 0.8723 | 56 | 460 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4p3jC00 | Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter | 0.8646 | 55 | 460 | 1.10.3860.10 |
| 4p3jC00 | Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter | 0.8446 | 55 | 460 | 1.10.3860.10 |
| af_P0AGE4_8_406_1.10.3860.10 | Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter | 0.8259 | 48 | 462 | 1.10.3860.10 |
| af_P0AGE4_8_406_1.10.3860.10 | Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter | 0.8182 | 48 | 462 | 1.10.3860.10 |
| af_P0A830_1_408_1.10.3860.10 | Mainly Alpha;Orthogonal Bundle;Proton glutamate symport protein;Sodium:dicarboxylate symporter | 0.5612 | 54 | 467 | 1.10.3860.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A520CIS3-F1-model_v4 | Cation:dicarboxylase symporter family transporter | 0.9903 | 265 | 468 |
GO:0005886
GO:0006835 GO:0015293 |
| AF-A0A7W1KNZ5-F1-model_v4 | Cation:dicarboxylase symporter family transporter | 0.9897 | 282 | 465 |
GO:0005886
GO:0006835 GO:0015293 |
| AF-A0A5C7MDU5-F1-model_v4 | Cation:dicarboxylase symporter family transporter | 0.9772 | 3 | 468 |
GO:0005886
GO:0006835 GO:0015293 |
| AF-A0A7W0W582-F1-model_v4 | Cation:dicarboxylase symporter family transporter | 0.9735 | 268 | 465 |
GO:0005886
GO:0006835 GO:0015293 |
| AF-A0A380FMM2-F1-model_v4 | Proton sodium-glutamate symport protein | 0.9712 | 263 | 468 |
GO:0005886
GO:0006835 GO:0015293 |