F231830

General Info

Members Datasets Scaffolds Average Seq Length
159 98 318 554

Family's Representative Sequence

Representative Sequence 3300006038|Ga0075365_10054047|Ga0075365_100540472
Length 613
Sequence VRPSSSTEPPGTPLALRSRTTGGRALHLRWLGKVPYAEALAVQTGLFEQSSEDHALLLEHPHVFTMGVRAKPENVLQDANVIGADIVHVNRGGDVTYHGPGQLVGYFVQNVGGRGGLTNTAKYVCALEQVIIDTLDDLGLPGATRERGMPGVWIGDNKIAAIGVRITRGRTMHGFALNVDTDLSWFDKIVPCGLEGKSVTSLHNEGITVTMRQVVDAMTNRLETAAARRLSTRTAPEVAQSAWKVEENFGEWTEVVRYDSAWKVKTTDLSAFTRGEGPGQLTPTQQGPVGGATPNPPKKQPVRLLGRLAEAGVSTKDSIADNARKPDWMKVKANFGPEYTRLKKTVKQLDLVTVCEEAGCPNIFDCWNDGTATFMINGERCTRACGFCLVDTRKPEVLDPQEPQRVADAVAKMQLQHAVITVVARDDLQDGGAGAVAETIRAVHERCVGTAVEVLISDCKGDAESLQKIFDARPEVLNHNLETVVRLQRAVRPSAGYARSLSVLARAKQAGLVTKSGLIVGMGETFDEVTAAMFDLRSVGVDILTVGQYLRPTTNHLPMSRWWTPQEFDELKKAGDAMGFAHVEASPLTRSSYHAKQGAQAAATVTPAQAQFA

Samples

Sample ID Description Type Environment
1 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
5 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
6 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
7 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
9 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
10 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
11 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
12 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
13 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
16 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
19 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
20 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
24 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
25 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
26 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
27 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
32 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
34 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
35 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
36 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
37 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
38 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
39 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
40 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
41 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
42 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
43 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
44 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
45 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
46 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
47 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
48 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
49 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
50 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
51 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
52 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
53 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
54 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
55 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
56 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
57 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
58 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
59 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
60 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
61 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
62 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
63 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
64 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
79 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
80 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
81 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
82 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
83 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
84 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
85 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
89 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
90 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
91 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
92 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
93 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
94 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
95 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
96 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
97 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
98 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.58
Nodule 0
Rhizoplane 1.26
Rhizosphere 80.5
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075365_10054047 3300006038 Bacteria 2662
2 JGI25407J50210_10000755 3300003373 Bacteria 6807
3 Ga0070668_100031638 3300005347 Bacteria 4026
4 Ga0070671_100018715 3300005355 Bacteria 5628
5 Ga0070671_100037306 3300005355 Bacteria 4030
6 Ga0068858_100121087 3300005842 Bacteria 2447
7 Ga0068860_100017639 3300005843 Bacteria 6955
8 Ga0081455_10003477 3300005937 Bacteria 18091
9 Ga0081455_10007053 3300005937 Bacteria 11929
10 Ga0081538_10000578 3300005981 Bacteria 40775
11 Ga0081538_10003962 3300005981 Bacteria 13804
12 Ga0081538_10027704 3300005981 Bacteria 3919
13 Ga0075365_10006109 3300006038 Bacteria 6584
14 Ga0075365_10014709 3300006038 Bacteria 4712
15 Ga0075365_10029628 3300006038 Bacteria 3501
16 Ga0075365_10050549 3300006038 Bacteria 2742
17 Ga0075365_10064149 3300006038 Bacteria 2460
18 Ga0075368_10018706 3300006042 Bacteria 2607
19 Ga0075364_10021787 3300006051 Bacteria 4040
20 Ga0075364_10042273 3300006051 Bacteria 2960
21 Ga0075362_10011194 3300006177 Bacteria 3529
22 Ga0075369_10021545 3300006186 Bacteria 2650
23 Ga0075370_10046799 3300006353 Bacteria 2449
24 Ga0075428_100000422 3300006844 Bacteria 42096
25 Ga0075428_100004714 3300006844 Bacteria 15089
26 Ga0075430_100003124 3300006846 Bacteria 13854
27 Ga0075431_100005076 3300006847 Bacteria 12951
28 Ga0075431_100025447 3300006847 Bacteria 6065
29 Ga0075431_100059439 3300006847 Bacteria 3945
30 Ga0075429_100000377 3300006880 Bacteria 32771
31 Ga0075429_100003697 3300006880 Bacteria 13034
32 Ga0075429_100006133 3300006880 Bacteria 10390
33 Ga0111539_10009297 3300009094 Bacteria 12409
34 Ga0111539_10019137 3300009094 Bacteria 8459
35 Ga0111539_10035013 3300009094 Bacteria 6081
36 Ga0105245_10030474 3300009098 Bacteria 4769
37 Ga0105245_10064303 3300009098 Bacteria 3315
38 Ga0114129_10005107 3300009147 Bacteria 18473
39 Ga0114129_10005963 3300009147 Bacteria 17254
40 Ga0114129_10185962 3300009147 Bacteria 2823
41 Ga0105242_10074455 3300009176 Bacteria 2825
42 Ga0105239_10105169 3300010375 Bacteria 3126
43 Ga0182008_10002289 3300014497 Bacteria 12076
44 Ga0157379_10134271 3300014968 Bacteria 2229
45 Ga0213876_10016020 3300021384 Bacteria 3965
46 Ga0224572_1002330 3300024225 Bacteria 3042
47 Ga0207687_10007753 3300025927 Bacteria 7043
48 Ga0207687_10056853 3300025927 Bacteria 2745
49 Ga0207644_10074304 3300025931 Bacteria 2495
50 Ga0207686_10048815 3300025934 Bacteria 2624
51 Ga0207703_10103323 3300026035 Bacteria 2419
52 Ga0207428_10068907 3300027907 Bacteria 2782
53 Ga0268264_10004113 3300028381 Bacteria 12444
54 Ga0268264_10045490 3300028381 Bacteria 3644
55 Ga0265327_10025122 3300031251 Bacteria 3481
56 Ga0316576_10012391 3300031727 Bacteria 5629
57 Ga0316576_10015545 3300031727 Bacteria 5112
58 Ga0316576_10020247 3300031727 Bacteria 4574
59 Ga0316576_10035044 3300031727 Bacteria 3581
60 Ga0316578_10027439 3300031728 Bacteria 3219
61 Ga0316577_10043326 3300031733 Bacteria 2518
62 Ga0307410_10069584 3300031852 Bacteria 2435
63 Ga0307411_10035595 3300032005 Bacteria 3111
64 Ga0373930_0000334 3300034816 Bacteria 6106
65 Ga0373932_0001557 3300035112 Bacteria 6339
66 Ga0373931_0000013 3300035691 Bacteria 266932
67 Ga0373931_0000035 3300035691 Bacteria 80746
68 Ga0373927_0004386 3300035695 Bacteria 9896
69 Ga0373937_0034254 3300036401 Bacteria 4619
70 Ga0316584_0042312 3300036712 Bacteria 3397
71 Ga0373925_0015090 3300037068 Bacteria 5583
72 Ga0400485_02320 3300038735 Bacteria 3848
73 Ga0400483_000486 3300039062 Bacteria 18776
74 Ga0400483_002308 3300039062 Bacteria 77591
75 Ga0400483_040110 3300039062 Bacteria 5610
76 Ga0400483_160994 3300039062 Bacteria 2968
77 Ga0400483_208570 3300039062 Bacteria 32190
78 Ga0400483_214351 3300039062 Bacteria 70978
79 Ga0436365_1281686 3300039437 Bacteria 14221
80 Ga0436362_1240826 3300039453 Bacteria 7756
81 Ga0439448_0003101 3300042005 Bacteria 4576
82 Ga0439464_0007949 3300042439 Bacteria 2780
83 Ga0451577_0055528 3300042876 Bacteria 3533
84 Ga0453684_0003959 3300044712 Bacteria 32387
85 Ga0495639_0047230 3300046475 Bacteria 1950
86 Ga0495618_0012032 3300046514 Bacteria 5251
87 Ga0495667_0005899 3300046559 Bacteria 8292
88 Ga0495634_0002239 3300046642 Bacteria 16208
89 Ga0495635_0068915 3300046663 Bacteria 2426
90 Ga0495623_0023715 3300046679 Bacteria 3958
91 Ga0495674_0113077 3300047319 Bacteria 2300
92 Ga0495672_0007318 3300047320 Bacteria 8326
93 Ga0495602_0025921 3300048088 Bacteria 5666
94 Ga0496104_0182471 3300048907 Bacteria 2009
95 Ga0496104_0192250 3300048907 Bacteria 1953
96 Ga0501032_0002740 3300049569 Bacteria 13718
97 Ga0501033_0024031 3300049570 Bacteria 4598
98 Ga0501034_0000419 3300049571 Bacteria 71157
99 Ga0501034_0000520 3300049571 Bacteria 61951
100 Ga0501034_0017810 3300049571 Bacteria 7287
101 Ga0501034_0045030 3300049571 Bacteria 4460
102 Ga0501036_0031026 3300049572 Bacteria 4517
103 Ga0501036_0040169 3300049572 Bacteria 3957
104 Ga0501036_0090651 3300049572 Bacteria 2582
105 Ga0501037_0000592 3300049573 Bacteria 28402
106 Ga0501038_0004313 3300049574 Bacteria 13220
107 Ga0501039_0008324 3300049575 Bacteria 7902
108 Ga0501040_0005597 3300049576 Bacteria 8116
109 Ga0501040_0083344 3300049576 Bacteria 2218
110 Ga0501041_0001340 3300049577 Bacteria 13555
111 Ga0501041_0070143 3300049577 Bacteria 2151
112 Ga0501042_0007513 3300049578 Bacteria 7146
113 Ga0501043_0035811 3300049579 Bacteria 3905
114 Ga0501043_0040116 3300049579 Bacteria 3680
115 Ga0501046_0001357 3300049580 Bacteria 23652
116 Ga0501046_0024837 3300049580 Bacteria 4910
117 Ga0501047_0105941 3300049581 Bacteria 2692
118 Ga0501048_0023504 3300049582 Bacteria 4503
119 Ga0501048_0032576 3300049582 Bacteria 3766
120 Ga0501048_0056712 3300049582 Bacteria 2779
121 Ga0501067_0017659 3300049583 Bacteria 3950
122 Ga0501070_0005321 3300049586 Bacteria 10977
123 Ga0501070_0010106 3300049586 Bacteria 7988
124 Ga0501072_0008505 3300049588 Bacteria 7788
125 Ga0501072_0010509 3300049588 Bacteria 7048
126 Ga0501072_0041823 3300049588 Bacteria 3599
127 Ga0501072_0058439 3300049588 Bacteria 3039
128 Ga0501076_0002146 3300049592 Bacteria 13536
129 Ga0501076_0005639 3300049592 Bacteria 9022
130 Ga0501077_0017863 3300049593 Bacteria 4482
131 Ga0501079_0012859 3300049741 Bacteria 6389
132 Ga0501079_0019738 3300049741 Bacteria 5148
133 Ga0501080_0025421 3300049742 Bacteria 5496
134 Ga0501080_0057245 3300049742 Bacteria 3630
135 Ga0501080_0057248 3300049742 Bacteria 3630
136 Ga0501081_0001152 3300049743 Bacteria 16001
137 Ga0501081_0078188 3300049743 Bacteria 2312
138 Ga0501035_0068704 3300049822 Bacteria 3141
139 Ga0501044_0004834 3300049823 Bacteria 15064
140 Ga0501044_0005352 3300049823 Bacteria 14266
141 Ga0501045_0000276 3300049824 Bacteria 29874
142 nmdc:mga0yw44_117_c1 3300050492 Bacteria 27765
143 nmdc:mga0yw44_12721_c1 3300050492 Bacteria 4398
144 nmdc:mga0yw44_29319_c1 3300050492 Bacteria 3176
145 nmdc:mga0yw44_33157_c1 3300050492 Bacteria 3015
146 nmdc:mga0yw44_3962_c1 3300050492 Bacteria 6683
147 nmdc:mga09592_1520_c1 3300050508 Bacteria 18680
148 nmdc:mga09592_22009_c1 3300050508 Bacteria 5259
149 nmdc:mga09592_584_c1 3300050508 Bacteria 27581
150 nmdc:mga06r32_1338_c1 3300050510 Bacteria 22226
151 nmdc:mga06r32_4994_c1 3300050510 Bacteria 11941
152 nmdc:mga06r32_78021_c1 3300050510 Bacteria 3219
153 Ga0495595_0022931 3300053084 Bacteria 2744
154 Ga0495619_0004690 3300053085 Bacteria 8710
155 Ga0500566_0009553 3300053094 Bacteria 5728
156 Ga0500568_0000018 3300053139 Bacteria 196030
157 Ga0500616_0001307 3300053153 Bacteria 24658
158 Ga0501084_0032988 3300054114 Bacteria 4332
159 Ga0501082_0032411 3300060353 Bacteria 4507
160 Ga0075365_10054047
161 JGI25407J50210_10000755
162 Ga0070668_100031638
163 Ga0070671_100018715
164 Ga0070671_100037306
165 Ga0068858_100121087
166 Ga0068860_100017639
167 Ga0081455_10003477
168 Ga0081455_10007053
169 Ga0081538_10000578
170 Ga0081538_10003962
171 Ga0081538_10027704
172 Ga0075365_10006109
173 Ga0075365_10014709
174 Ga0075365_10029628
175 Ga0075365_10050549
176 Ga0075365_10064149
177 Ga0075368_10018706
178 Ga0075364_10021787
179 Ga0075364_10042273
180 Ga0075362_10011194
181 Ga0075369_10021545
182 Ga0075370_10046799
183 Ga0075428_100000422
184 Ga0075428_100004714
185 Ga0075430_100003124
186 Ga0075431_100005076
187 Ga0075431_100025447
188 Ga0075431_100059439
189 Ga0075429_100000377
190 Ga0075429_100003697
191 Ga0075429_100006133
192 Ga0111539_10009297
193 Ga0111539_10019137
194 Ga0111539_10035013
195 Ga0105245_10030474
196 Ga0105245_10064303
197 Ga0114129_10005107
198 Ga0114129_10005963
199 Ga0114129_10185962
200 Ga0105242_10074455
201 Ga0105239_10105169
202 Ga0182008_10002289
203 Ga0157379_10134271
204 Ga0213876_10016020
205 Ga0224572_1002330
206 Ga0207687_10007753
207 Ga0207687_10056853
208 Ga0207644_10074304
209 Ga0207686_10048815
210 Ga0207703_10103323
211 Ga0207428_10068907
212 Ga0268264_10004113
213 Ga0268264_10045490
214 Ga0265327_10025122
215 Ga0316576_10012391
216 Ga0316576_10015545
217 Ga0316576_10020247
218 Ga0316576_10035044
219 Ga0316578_10027439
220 Ga0316577_10043326
221 Ga0307410_10069584
222 Ga0307411_10035595
223 Ga0373930_0000334
224 Ga0373932_0001557
225 Ga0373931_0000013
226 Ga0373931_0000035
227 Ga0373927_0004386
228 Ga0373937_0034254
229 Ga0316584_0042312
230 Ga0373925_0015090
231 Ga0400485_02320
232 Ga0400483_000486
233 Ga0400483_002308
234 Ga0400483_040110
235 Ga0400483_160994
236 Ga0400483_208570
237 Ga0400483_214351
238 Ga0436365_1281686
239 Ga0436362_1240826
240 Ga0439448_0003101
241 Ga0439464_0007949
242 Ga0451577_0055528
243 Ga0453684_0003959
244 Ga0495639_0047230
245 Ga0495618_0012032
246 Ga0495667_0005899
247 Ga0495634_0002239
248 Ga0495635_0068915
249 Ga0495623_0023715
250 Ga0495674_0113077
251 Ga0495672_0007318
252 Ga0495602_0025921
253 Ga0496104_0182471
254 Ga0496104_0192250
255 Ga0501032_0002740
256 Ga0501033_0024031
257 Ga0501034_0000419
258 Ga0501034_0000520
259 Ga0501034_0017810
260 Ga0501034_0045030
261 Ga0501036_0031026
262 Ga0501036_0040169
263 Ga0501036_0090651
264 Ga0501037_0000592
265 Ga0501038_0004313
266 Ga0501039_0008324
267 Ga0501040_0005597
268 Ga0501040_0083344
269 Ga0501041_0001340
270 Ga0501041_0070143
271 Ga0501042_0007513
272 Ga0501043_0035811
273 Ga0501043_0040116
274 Ga0501046_0001357
275 Ga0501046_0024837
276 Ga0501047_0105941
277 Ga0501048_0023504
278 Ga0501048_0032576
279 Ga0501048_0056712
280 Ga0501067_0017659
281 Ga0501070_0005321
282 Ga0501070_0010106
283 Ga0501072_0008505
284 Ga0501072_0010509
285 Ga0501072_0041823
286 Ga0501072_0058439
287 Ga0501076_0002146
288 Ga0501076_0005639
289 Ga0501077_0017863
290 Ga0501079_0012859
291 Ga0501079_0019738
292 Ga0501080_0025421
293 Ga0501080_0057245
294 Ga0501080_0057248
295 Ga0501081_0001152
296 Ga0501081_0078188
297 Ga0501035_0068704
298 Ga0501044_0004834
299 Ga0501044_0005352
300 Ga0501045_0000276
301 nmdc:mga0yw44_117_c1
302 nmdc:mga0yw44_12721_c1
303 nmdc:mga0yw44_29319_c1
304 nmdc:mga0yw44_33157_c1
305 nmdc:mga0yw44_3962_c1
306 nmdc:mga09592_1520_c1
307 nmdc:mga09592_22009_c1
308 nmdc:mga09592_584_c1
309 nmdc:mga06r32_1338_c1
310 nmdc:mga06r32_4994_c1
311 nmdc:mga06r32_78021_c1
312 Ga0495595_0022931
313 Ga0495619_0004690
314 Ga0500566_0009553
315 Ga0500568_0000018
316 Ga0500616_0001307
317 Ga0501084_0032988
318 Ga0501082_0032411

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21948

LplA-B_cat

Lipoyl protein ligase A/B catalytic domain

35

223

0.92

PF16881

LIAS_N

N-terminal domain of lipoyl synthase of Radical_SAM family

307

360

0.9

PF04055

Radical_SAM

Radical SAM superfamily

375

536

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5exk-assembly6.cif.gz_K crystal structure of m. tuberculosis lipoyl synthase with 6-thiooctanoyl peptide intermediate 0.945 300 581
4u0p-assembly1.cif.gz_B the crystal structure of lipoyl synthase in complex with s-adenosyl homocysteine 0.9333 300 573
5exi-assembly1.cif.gz_A crystal structure of m. tuberculosis lipoyl synthase at 2.28 a resolution 0.9167 311 582
4u0o-assembly1.cif.gz_B crystal structure of thermosynechococcus elongatus lipoyl synthase 2 complexed with mta and dtt 0.9121 303 573
4u0o-assembly1.cif.gz_B crystal structure of thermosynechococcus elongatus lipoyl synthase 2 complexed with mta and dtt 0.9024 303 573
ID Description Score Start End Superfamily
af_Q2FZX4_3_265_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9557 300 552 3.20.20.70
af_P9WK91_74_280_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9523 351 556 3.20.20.70
af_P60716_82_298_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9445 347 559 3.20.20.70
af_P9WK91_74_280_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9433 351 556 3.20.20.70
af_P0CH67_115_331_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9354 348 547 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A7S3MIA9-F1-model_v4 Radical SAM core domain-containing protein 0.9818 393 521 GO:0005739
GO:0016992
GO:0046872
GO:0051539
AF-A0A3C1S1M4-F1-model_v4 Lipoyl synthase 0.9806 382 493 GO:0016992
GO:0051539
AF-W4V426-F1-model_v4 Lipoyl synthase (EC 2.8.1.8) (Lip-syn) (LS) (Lipoate synthase) (Lipoic acid synthase) (Sulfur insertion protein LipA) 0.9784 372 577 GO:0005737
GO:0016992
GO:0046872
GO:0051539
AF-A0A848UFZ2-F1-model_v4 Lipoyl synthase (EC 2.8.1.8) 0.9781 389 577 GO:0005737
GO:0016992
GO:0046872
GO:0051539
AF-A0A6L8I7H7-F1-model_v4 Lipoyl synthase (EC 2.8.1.8) 0.9767 386 578 GO:0016992
GO:0046872
GO:0051539

Map