F231785

General Info

Members Datasets Scaffolds Average Seq Length
159 106 318 194

Family's Representative Sequence

Representative Sequence 3300005981|Ga0081538_10049872|Ga0081538_100498722
Length 217
Sequence VAHGAYTRLGVDERRRRLLELGADLFARHSFDELSMARIAREAGISKALLYHYFPSKRDFFVATLEQAAGEVQRRTEPDPALPAPAALAGSLDAFLAWVEENGTAYRKLMESAGSVPEVGALIDAVRDRTSARILAGLDAGAETPPRVRTAARAWLWFLDGAILDWLDHRDLSRAELRDFLLGSLAGALDAAGAGDLLPGVSPASGDAAHGRRRGGS

Samples

Sample ID Description Type Environment
1 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
7 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
8 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
11 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
12 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
13 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
27 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
28 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
31 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
32 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
33 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
46 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
49 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
50 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
51 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
52 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
53 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
54 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
55 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
56 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
57 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
58 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
59 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
60 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
61 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
66 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
67 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
68 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
69 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
70 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
71 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
72 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
73 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
74 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
75 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
76 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
77 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
78 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
79 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
80 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
81 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
84 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
85 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
86 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
87 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
88 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
89 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
90 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
91 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
92 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
93 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
94 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
95 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
96 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
98 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
99 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
100 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
101 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
104 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
105 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
106 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 17.61
Rhizosphere 77.36
Stem 0
Stem Tuber 0
Unclassified 5.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081538_10049872 3300005981 Bacteria 2535
2 JGI25407J50210_10009927 3300003373 Bacteria 2417
3 Ga0070668_100014397 3300005347 Bacteria 5911
4 Ga0070659_100431229 3300005366 Bacteria 1116
5 Ga0070659_100663357 3300005366 Bacteria 900
6 Ga0070709_10134786 3300005434 Bacteria 1690
7 Ga0070700_100027872 3300005441 Bacteria 3355
8 Ga0070700_100135750 3300005441 Bacteria 1665
9 Ga0070662_100025137 3300005457 Bacteria 4109
10 Ga0070679_100321487 3300005530 Bacteria 1497
11 Ga0070684_100051494 3300005535 Bacteria 3577
12 Ga0070695_100281073 3300005545 Bacteria 1223
13 Ga0070696_100123963 3300005546 Bacteria 1873
14 Ga0068854_100467481 3300005578 Bacteria 1057
15 Ga0068851_10159827 3300005834 Bacteria 1237
16 Ga0081455_10106914 3300005937 Bacteria 2231
17 Ga0081538_10002223 3300005981 Bacteria 19231
18 Ga0081538_10004541 3300005981 Bacteria 12781
19 Ga0081538_10015106 3300005981 Bacteria 5999
20 Ga0081538_10019721 3300005981 Bacteria 4994
21 Ga0081538_10039469 3300005981 Bacteria 3028
22 Ga0081538_10048458 3300005981 Bacteria 2590
23 Ga0081540_1071080 3300005983 Bacteria 1609
24 Ga0081539_10026695 3300005985 Bacteria 3676
25 Ga0070717_10193511 3300006028 Bacteria 1778
26 Ga0075428_100144372 3300006844 Bacteria 2587
27 Ga0075428_100284316 3300006844 Bacteria 1780
28 Ga0075431_100091311 3300006847 Bacteria 3143
29 Ga0075431_100642715 3300006847 Bacteria 1042
30 Ga0075433_10137340 3300006852 Bacteria 2173
31 Ga0111539_10043948 3300009094 Bacteria 5354
32 Ga0105245_10053240 3300009098 Bacteria 3632
33 Ga0114129_10865506 3300009147 Bacteria 1148
34 Ga0114129_11242210 3300009147 Bacteria 926
35 Ga0105243_10400801 3300009148 Bacteria 1274
36 Ga0105249_10696585 3300009553 Bacteria 1076
37 Ga0157371_10601286 3300013102 Unclassified 818
38 Ga0163162_10586359 3300013306 Unclassified 1242
39 Ga0157375_10697527 3300013308 Bacteria 1169
40 Ga0163163_10207507 3300014325 Unclassified 2008
41 Ga0163163_11600518 3300014325 Bacteria 712
42 Ga0157376_11186168 3300014969 Bacteria 791
43 Ga0157376_11695332 3300014969 Unclassified 667
44 Ga0213876_10129867 3300021384 Bacteria 1339
45 Ga0213875_10075981 3300021388 Unclassified 1568
46 Ga0207645_10107441 3300025907 Bacteria 1805
47 Ga0207690_10261892 3300025932 Bacteria 1340
48 Ga0207706_10030440 3300025933 Bacteria 4814
49 Ga0207704_10545191 3300025938 Bacteria 942
50 Ga0207661_10073345 3300025944 Bacteria 2803
51 Ga0207679_10036602 3300025945 Bacteria 3482
52 Ga0207712_10007222 3300025961 Bacteria 7005
53 Ga0207668_10091237 3300025972 Bacteria 2238
54 Ga0207668_10525479 3300025972 Bacteria 1022
55 Ga0207640_10897876 3300025981 Bacteria 774
56 Ga0207640_10902368 3300025981 Bacteria 772
57 Ga0207708_10017694 3300026075 Bacteria 5364
58 Ga0207708_10166312 3300026075 Bacteria 1744
59 Ga0207708_10405793 3300026075 Bacteria 1128
60 Ga0207675_100059695 3300026118 Bacteria 3559
61 Ga0207698_10785011 3300026142 Bacteria 954
62 Ga0207428_10059619 3300027907 Bacteria 3026
63 Ga0268264_10066611 3300028381 Bacteria 3037
64 Ga0307408_100943918 3300031548 Bacteria 792
65 Ga0307410_10093031 3300031852 Bacteria 2145
66 Ga0307406_10027425 3300031901 Bacteria 3432
67 Ga0307407_10035967 3300031903 Unclassified 2725
68 Ga0307409_100007622 3300031995 Bacteria 6491
69 Ga0307409_100109981 3300031995 Bacteria 2309
70 Ga0307416_100023697 3300032002 Bacteria 4461
71 Ga0307416_100040289 3300032002 Unclassified 3627
72 Ga0307415_100016011 3300032126 Bacteria 4456
73 Ga0307415_100871015 3300032126 Bacteria 828
74 Ga0373948_0012311 3300034817 Bacteria 1526
75 Ga0373949_0011575 3300035090 Bacteria 1944
76 Ga0373932_0222692 3300035112 Bacteria 679
77 Ga0373960_0014600 3300035121 Bacteria 1993
78 Ga0395899_0175551 3300037312 Bacteria 1507
79 Ga0395899_0565296 3300037312 Bacteria 729
80 Ga0395900_0125860 3300037418 Bacteria 2628
81 Ga0395898_0057796 3300037466 Bacteria 3778
82 Ga0395898_0078333 3300037466 Bacteria 3189
83 Ga0395898_0276648 3300037466 Bacteria 1601
84 Ga0395898_0517284 3300037466 Bacteria 1135
85 Ga0395905_0059542 3300037471 Bacteria 3570
86 Ga0395905_0065368 3300037471 Bacteria 3405
87 Ga0436364_0533791 3300037853 Bacteria 7941
88 Ga0395901_0096368 3300038443 Bacteria 3100
89 Ga0395901_0117498 3300038443 Bacteria 2794
90 Ga0395901_0539641 3300038443 Bacteria 1183
91 Ga0395901_1335433 3300038443 Bacteria 678
92 Ga0436365_0215686 3300039437 Bacteria 839
93 Ga0436360_1062391 3300039438 Bacteria 984
94 Ga0436363_1054660 3300039450 Bacteria 834
95 Ga0451793_0272529 3300041452 Bacteria 890
96 Ga0451793_0804755 3300041452 Bacteria 1556
97 Ga0466963_0077704 3300044694 Bacteria 2243
98 Ga0466963_0117228 3300044694 Bacteria 1830
99 Ga0466963_0191119 3300044694 Bacteria 1430
100 Ga0466963_0496710 3300044694 Bacteria 861
101 Ga0466971_0007509 3300044719 Bacteria 4751
102 Ga0466971_0023685 3300044719 Bacteria 2737
103 Ga0466957_0131993 3300044842 Bacteria 1601
104 Ga0466957_0286059 3300044842 Bacteria 1104
105 Ga0466957_0804662 3300044842 Bacteria 668
106 Ga0466960_0193531 3300044901 Bacteria 1108
107 Ga0466960_0216844 3300044901 Bacteria 1051
108 Ga0466958_0025862 3300045836 Bacteria 3464
109 Ga0466967_0007842 3300045976 Bacteria 7754
110 Ga0466967_0039434 3300045976 Bacteria 4061
111 Ga0466967_0346553 3300045976 Bacteria 1437
112 Ga0466967_0378640 3300045976 Bacteria 1374
113 Ga0466967_0488785 3300045976 Bacteria 1207
114 Ga0466967_0802668 3300045976 Bacteria 934
115 Ga0495605_0188769 3300046474 Bacteria 903
116 Ga0495630_0127354 3300046517 Bacteria 1933
117 Ga0495637_0329554 3300046520 Bacteria 538
118 Ga0495667_0127783 3300046559 Bacteria 1640
119 Ga0495624_0508942 3300046690 Bacteria 720
120 Ga0496100_0002659 3300048903 Bacteria 9113
121 Ga0496101_0001403 3300048904 Bacteria 14427
122 Ga0496101_0261714 3300048904 Bacteria 1349
123 Ga0496102_0127535 3300048905 Bacteria 2379
124 Ga0496102_0296613 3300048905 Bacteria 1524
125 Ga0496104_0094129 3300048907 Bacteria 2866
126 Ga0496104_0211096 3300048907 Bacteria 1853
127 Ga0496105_0127290 3300048908 Bacteria 2100
128 Ga0496106_0154641 3300048909 Bacteria 1810
129 Ga0496107_0609573 3300048910 Unclassified 806
130 Ga0496108_0011707 3300048911 Bacteria 7136
131 Ga0496108_0563061 3300048911 Bacteria 994
132 Ga0496109_0021709 3300048912 Bacteria 5681
133 Ga0496109_0342704 3300048912 Bacteria 1411
134 Ga0496110_0082847 3300048913 Bacteria 2861
135 Ga0496110_0892638 3300048913 Bacteria 795
136 Ga0496111_0091029 3300048914 Bacteria 2235
137 Ga0496111_0091203 3300048914 Bacteria 2233
138 Ga0496112_0003119 3300048915 Bacteria 13589
139 Ga0496112_0050878 3300048915 Bacteria 4063
140 Ga0496112_0144720 3300048915 Bacteria 2345
141 Ga0496112_0147149 3300048915 Bacteria 2324
142 Ga0496113_0013134 3300048916 Bacteria 5594
143 Ga0496113_0065027 3300048916 Bacteria 2759
144 Ga0496114_0515017 3300048917 Unclassified 1058
145 Ga0496115_0000209 3300048918 Bacteria 54079
146 Ga0496120_0005968 3300048923 Bacteria 9491
147 Ga0496121_0012315 3300048924 Bacteria 9354
148 Ga0496121_0026410 3300048924 Bacteria 5474
149 Ga0501039_0219356 3300049575 Bacteria 1495
150 Ga0501067_0222315 3300049583 Bacteria 1052
151 Ga0501071_0262476 3300049587 Bacteria 1305
152 Ga0501072_0234224 3300049588 Bacteria 1463
153 Ga0501075_0114379 3300049591 Bacteria 2052
154 Ga0501076_0640384 3300049592 Bacteria 877
155 nmdc:mga05p37_792690_c1 3300050507 Bacteria 1038
156 nmdc:mga08y16_72890_c1 3300050511 Bacteria 3579
157 nmdc:mga0a205_375956_c1 3300050515 Bacteria 1286
158 Ga0501082_0449666 3300060353 Bacteria 1126
159 Ga0466962_0017125 3300061719 Bacteria 3492
160 Ga0081538_10049872
161 JGI25407J50210_10009927
162 Ga0070668_100014397
163 Ga0070659_100431229
164 Ga0070659_100663357
165 Ga0070709_10134786
166 Ga0070700_100027872
167 Ga0070700_100135750
168 Ga0070662_100025137
169 Ga0070679_100321487
170 Ga0070684_100051494
171 Ga0070695_100281073
172 Ga0070696_100123963
173 Ga0068854_100467481
174 Ga0068851_10159827
175 Ga0081455_10106914
176 Ga0081538_10002223
177 Ga0081538_10004541
178 Ga0081538_10015106
179 Ga0081538_10019721
180 Ga0081538_10039469
181 Ga0081538_10048458
182 Ga0081540_1071080
183 Ga0081539_10026695
184 Ga0070717_10193511
185 Ga0075428_100144372
186 Ga0075428_100284316
187 Ga0075431_100091311
188 Ga0075431_100642715
189 Ga0075433_10137340
190 Ga0111539_10043948
191 Ga0105245_10053240
192 Ga0114129_10865506
193 Ga0114129_11242210
194 Ga0105243_10400801
195 Ga0105249_10696585
196 Ga0157371_10601286
197 Ga0163162_10586359
198 Ga0157375_10697527
199 Ga0163163_10207507
200 Ga0163163_11600518
201 Ga0157376_11186168
202 Ga0157376_11695332
203 Ga0213876_10129867
204 Ga0213875_10075981
205 Ga0207645_10107441
206 Ga0207690_10261892
207 Ga0207706_10030440
208 Ga0207704_10545191
209 Ga0207661_10073345
210 Ga0207679_10036602
211 Ga0207712_10007222
212 Ga0207668_10091237
213 Ga0207668_10525479
214 Ga0207640_10897876
215 Ga0207640_10902368
216 Ga0207708_10017694
217 Ga0207708_10166312
218 Ga0207708_10405793
219 Ga0207675_100059695
220 Ga0207698_10785011
221 Ga0207428_10059619
222 Ga0268264_10066611
223 Ga0307408_100943918
224 Ga0307410_10093031
225 Ga0307406_10027425
226 Ga0307407_10035967
227 Ga0307409_100007622
228 Ga0307409_100109981
229 Ga0307416_100023697
230 Ga0307416_100040289
231 Ga0307415_100016011
232 Ga0307415_100871015
233 Ga0373948_0012311
234 Ga0373949_0011575
235 Ga0373932_0222692
236 Ga0373960_0014600
237 Ga0395899_0175551
238 Ga0395899_0565296
239 Ga0395900_0125860
240 Ga0395898_0057796
241 Ga0395898_0078333
242 Ga0395898_0276648
243 Ga0395898_0517284
244 Ga0395905_0059542
245 Ga0395905_0065368
246 Ga0436364_0533791
247 Ga0395901_0096368
248 Ga0395901_0117498
249 Ga0395901_0539641
250 Ga0395901_1335433
251 Ga0436365_0215686
252 Ga0436360_1062391
253 Ga0436363_1054660
254 Ga0451793_0272529
255 Ga0451793_0804755
256 Ga0466963_0077704
257 Ga0466963_0117228
258 Ga0466963_0191119
259 Ga0466963_0496710
260 Ga0466971_0007509
261 Ga0466971_0023685
262 Ga0466957_0131993
263 Ga0466957_0286059
264 Ga0466957_0804662
265 Ga0466960_0193531
266 Ga0466960_0216844
267 Ga0466958_0025862
268 Ga0466967_0007842
269 Ga0466967_0039434
270 Ga0466967_0346553
271 Ga0466967_0378640
272 Ga0466967_0488785
273 Ga0466967_0802668
274 Ga0495605_0188769
275 Ga0495630_0127354
276 Ga0495637_0329554
277 Ga0495667_0127783
278 Ga0495624_0508942
279 Ga0496100_0002659
280 Ga0496101_0001403
281 Ga0496101_0261714
282 Ga0496102_0127535
283 Ga0496102_0296613
284 Ga0496104_0094129
285 Ga0496104_0211096
286 Ga0496105_0127290
287 Ga0496106_0154641
288 Ga0496107_0609573
289 Ga0496108_0011707
290 Ga0496108_0563061
291 Ga0496109_0021709
292 Ga0496109_0342704
293 Ga0496110_0082847
294 Ga0496110_0892638
295 Ga0496111_0091029
296 Ga0496111_0091203
297 Ga0496112_0003119
298 Ga0496112_0050878
299 Ga0496112_0144720
300 Ga0496112_0147149
301 Ga0496113_0013134
302 Ga0496113_0065027
303 Ga0496114_0515017
304 Ga0496115_0000209
305 Ga0496120_0005968
306 Ga0496121_0012315
307 Ga0496121_0026410
308 Ga0501039_0219356
309 Ga0501067_0222315
310 Ga0501071_0262476
311 Ga0501072_0234224
312 Ga0501075_0114379
313 Ga0501076_0640384
314 nmdc:mga05p37_792690_c1
315 nmdc:mga08y16_72890_c1
316 nmdc:mga0a205_375956_c1
317 Ga0501082_0449666
318 Ga0466962_0017125

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

18

64

0.95

PF21943

TetR_C_46

Tetracyclin repressor-like, C-terminal domain

85

187

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qib-assembly1.cif.gz_B crystal structure of tetr-family transcriptional regulator from streptomyces coelicolor 0.8891 7 184
2qib-assembly1.cif.gz_A crystal structure of tetr-family transcriptional regulator from streptomyces coelicolor 0.8849 1 185
2qib-assembly1.cif.gz_A crystal structure of tetr-family transcriptional regulator from streptomyces coelicolor 0.8467 1 185
6o6n-assembly1.cif.gz_A structure of the regulator fasr from mycobacterium tuberculosis in complex with c20-coa 0.8213 5 182
6o6o-assembly1.cif.gz_B structure of the regulator fasr from mycobacterium tuberculosis 0.8069 7 182
ID Description Score Start End Superfamily
3mvpB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9278 5 46 1.10.10.60
1pb6B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9223 3 55 1.10.10.60
2eh3A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9105 6 52 1.10.10.60
2ns7A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.91 7 63 1.10.10.60
4x1eB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9035 10 55 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A6J7H9R3-F1-model_v4 Unannotated protein 0.9547 3 185 GO:0000976
GO:0003700
AF-A0A7W0RCV0-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9529 2 181 GO:0000976
GO:0003700
AF-A0A328VJQ6-F1-model_v4 HTH tetR-type domain-containing protein 0.9514 6 185 GO:0000976
GO:0003700
AF-A0A537XCR0-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9446 2 185 GO:0000976
GO:0003700
AF-H0E7S5-F1-model_v4 Transcriptional regulator TetR family 0.9423 3 185 GO:0000976
GO:0003700

Map