F230923

General Info

Members Datasets Scaffolds Average Seq Length
158 104 314 559

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2920107658|2920111440
Length 642
Sequence RRKSLLLALAATLAPAYGLLAQEPSPPGTAGDKPAAKPAAESKAAEPKKDAKAAETITDPIERIKDEGLNRSQVMATLSYLTDVIGPRLTASPGLKRANEWTCQTLAKWGMSNAHLEAWGPFGRGWTLKRFSAQIIEPQCIPLIAFPKAWSPGTDGPLKAPVVYFNVKTESDFEKHKGKLKGAIVLTGPPREISTGFEPEANRRTDKELLDLADSDGQRPQRPSPTAAGPNANRGPGAPGGPGGAPAGGPQARRSRFGPEMMAQMQLAGKKAKFLADEGAAVLVDCSSQGDGGTLFVAQASVPGVSSFSMPGQPRPAKRVSVWDKDAPKIPVQMTMSKEHYNRLVRMIEQGEKPTMVVDLSVQFHDEDLMAYNTIAEIPGTDLKDEVVMLGGHIDSWHSATGTTDNGVGVATTMEAMRILKALDLKPRRTIRIGLWSGEEQGLFGSRAYVAQHFGKNYDAMAAMMGGPQPSSESKEKDPASPVKTSTDPKGEFERFSAYYNLDNGTGKIRGVYMEGNEAVRPIFRKMLAPFRELGATTLTLSNTGGTDHQSFDGIGLPGFQFIQDEMHYSTRTHHSNQDVFDEASADDLKQAATIMAAFAYETAMLDEKLPRKPARPAPERRAPSGSPTATPPGGGPGPATP

Samples

Sample ID Description Type Environment
1 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
12 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
28 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
57 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
58 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
82 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
83 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
86 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
87 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
88 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
89 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
90 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
91 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
92 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
93 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
94 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
95 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
96 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
97 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
98 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
99 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
100 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
101 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
104 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.1
Metatranscriptomes 0.63
Isolates 1.27

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.63
Rhizosphere 96.2
Stem 0
Stem Tuber 0
Unclassified 18.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065715_10001648 3300005293 Bacteria 8018
2 Ga0065707_10112807 3300005295 Bacteria 2348
3 Ga0065707_10116369 3300005295 Bacteria 2240
4 Ga0070670_100011393 3300005331 Bacteria 7603
5 Ga0068869_100022447 3300005334 Bacteria 4349
6 Ga0070682_100000058 3300005337 Bacteria 108660
7 Ga0070682_100011596 3300005337 Bacteria 5039
8 Ga0068868_100075917 3300005338 Bacteria 2686
9 Ga0070687_100019671 3300005343 Unclassified 3145
10 Ga0070687_100024956 3300005343 Unclassified 2862
11 Ga0070692_10038701 3300005345 Unclassified 2432
12 Ga0070669_100001067 3300005353 Bacteria 20037
13 Ga0070669_100083591 3300005353 Bacteria 2381
14 Ga0070671_100010163 3300005355 Bacteria 7553
15 Ga0070671_100015094 3300005355 Bacteria 6239
16 Ga0070671_100019637 3300005355 Bacteria 5502
17 Ga0070671_100045407 3300005355 Unclassified 3652
18 Ga0070703_10000043 3300005406 Bacteria 62037
19 Ga0070703_10001612 3300005406 Bacteria 6711
20 Ga0070705_100018487 3300005440 Bacteria 3654
21 Ga0070694_100001183 3300005444 Bacteria 14993
22 Ga0070694_100017105 3300005444 Bacteria 4576
23 Ga0070694_100034361 3300005444 Bacteria 3343
24 Ga0070678_100077347 3300005456 Bacteria 2510
25 Ga0068867_100039517 3300005459 Bacteria 3440
26 Ga0070685_10058248 3300005466 Bacteria 2251
27 Ga0070698_100115643 3300005471 Unclassified 2646
28 Ga0070697_100000014 3300005536 Bacteria 144589
29 Ga0070686_100032342 3300005544 Unclassified 3207
30 Ga0070665_100036848 3300005548 Unclassified 4918
31 Ga0070704_100098297 3300005549 Bacteria 2199
32 Ga0070704_100142209 3300005549 Unclassified 1875
33 Ga0068855_100102068 3300005563 Unclassified 3301
34 Ga0068857_100020761 3300005577 Bacteria 5779
35 Ga0068857_100049226 3300005577 Bacteria 3739
36 Ga0068852_100043240 3300005616 Bacteria 3820
37 Ga0068859_100063399 3300005617 Bacteria 3727
38 Ga0068859_100066108 3300005617 Bacteria 3650
39 Ga0068864_100006277 3300005618 Bacteria 9751
40 Ga0068864_100078717 3300005618 Bacteria 2885
41 Ga0068851_10000668 3300005834 Bacteria 14663
42 Ga0068870_10067775 3300005840 Bacteria 1937
43 Ga0068863_100063055 3300005841 Unclassified 3505
44 Ga0068858_100060866 3300005842 Bacteria 3490
45 Ga0068862_100012944 3300005844 Bacteria 6902
46 Ga0068862_100078500 3300005844 Unclassified 2860
47 Ga0081539_10001923 3300005985 Bacteria 32064
48 Ga0068871_100003305 3300006358 Bacteria 11063
49 Ga0068871_100004889 3300006358 Bacteria 9360
50 Ga0068871_100020040 3300006358 Bacteria 5118
51 Ga0075428_100011380 3300006844 Bacteria 9895
52 Ga0075428_100155876 3300006844 Bacteria 2481
53 Ga0075433_10084064 3300006852 Unclassified 2809
54 Ga0068865_100062311 3300006881 Unclassified 2618
55 Ga0097620_100063399 3300006931 Bacteria 3727
56 Ga0097620_100066108 3300006931 Bacteria 3650
57 Ga0105240_10014319 3300009093 Bacteria 10832
58 Ga0105245_10009438 3300009098 Bacteria 8514
59 Ga0114129_10024231 3300009147 Bacteria 8600
60 Ga0114129_10044662 3300009147 Bacteria 6233
61 Ga0114129_10078976 3300009147 Unclassified 4576
62 Ga0114129_10356355 3300009147 Unclassified 1937
63 Ga0105241_10067678 3300009174 Bacteria 2765
64 Ga0105242_10145461 3300009176 Bacteria 2062
65 Ga0105248_10002850 3300009177 Bacteria 19191
66 Ga0105248_10065382 3300009177 Bacteria 4084
67 Ga0105237_10004382 3300009545 Bacteria 16366
68 Ga0105249_10051975 3300009553 Unclassified 3740
69 Ga0105249_10055221 3300009553 Bacteria 3632
70 Ga0105239_10023257 3300010375 Bacteria 6827
71 Ga0105239_10118007 3300010375 Bacteria 2945
72 Ga0157371_10102710 3300013102 Unclassified 2028
73 Ga0157374_10014190 3300013296 Bacteria 6966
74 Ga0157374_10215673 3300013296 Bacteria 1882
75 Ga0157378_10013200 3300013297 Bacteria 7224
76 Ga0157378_10014029 3300013297 Bacteria 7015
77 Ga0157378_10022945 3300013297 Bacteria 5494
78 Ga0157378_10094368 3300013297 Bacteria 2724
79 Ga0163162_10005428 3300013306 Bacteria 12322
80 Ga0163162_10173043 3300013306 Unclassified 2284
81 Ga0157372_10008428 3300013307 Bacteria 10945
82 Ga0157372_10036837 3300013307 Bacteria 5394
83 Ga0157372_10167018 3300013307 Bacteria 2545
84 Ga0157375_10002447 3300013308 Bacteria 16063
85 Ga0157375_10187463 3300013308 Unclassified 2222
86 Ga0163163_10180407 3300014325 Unclassified 2159
87 Ga0157380_10001270 3300014326 Bacteria 16394
88 Ga0157380_10015672 3300014326 Bacteria 5572
89 Ga0157380_10051931 3300014326 Bacteria 3245
90 Ga0157376_10003575 3300014969 Bacteria 10718
91 Ga0163161_10002834 3300017792 Bacteria 12298
92 Ga0213876_10000033 3300021384 Bacteria 205318
93 Ga0213876_10000143 3300021384 Bacteria 76974
94 Ga0224712_10014070 3300022467 Bacteria 2565
95 Ga0207653_10000263 3300025885 Bacteria 32142
96 Ga0207705_10038850 3300025909 Bacteria 3410
97 Ga0207695_10001167 3300025913 Bacteria 45324
98 Ga0207660_10091253 3300025917 Bacteria 2259
99 Ga0207662_10005576 3300025918 Bacteria 6726
100 Ga0207662_10016043 3300025918 Unclassified 4222
101 Ga0207662_10039800 3300025918 Unclassified 2759
102 Ga0207681_10004117 3300025923 Bacteria 9012
103 Ga0207681_10105943 3300025923 Bacteria 2036
104 Ga0207650_10000555 3300025925 Bacteria 30291
105 Ga0207650_10018894 3300025925 Bacteria 4842
106 Ga0207644_10023329 3300025931 Unclassified 4237
107 Ga0207644_10026587 3300025931 Bacteria 3989
108 Ga0207644_10035470 3300025931 Bacteria 3495
109 Ga0207644_10035619 3300025931 Bacteria 3489
110 Ga0207686_10000127 3300025934 Bacteria 61880
111 Ga0207691_10002015 3300025940 Bacteria 19898
112 Ga0207691_10022507 3300025940 Bacteria 5943
113 Ga0207691_10033284 3300025940 Bacteria 4798
114 Ga0207711_10010159 3300025941 Bacteria 7817
115 Ga0207711_10023094 3300025941 Bacteria 5208
116 Ga0207689_10002880 3300025942 Bacteria 15865
117 Ga0207689_10111483 3300025942 Bacteria 2249
118 Ga0207712_10079768 3300025961 Unclassified 2379
119 Ga0207640_10048987 3300025981 Bacteria 2734
120 Ga0207703_10015471 3300026035 Bacteria 5947
121 Ga0207639_10000924 3300026041 Bacteria 19892
122 Ga0207708_10035006 3300026075 Unclassified 3821
123 Ga0207641_10024619 3300026088 Unclassified 4960
124 Ga0207641_10120690 3300026088 Bacteria 2339
125 Ga0207674_10003614 3300026116 Bacteria 18852
126 Ga0207674_10062712 3300026116 Bacteria 3754
127 Ga0207675_100019677 3300026118 Bacteria 6301
128 Ga0207675_100055885 3300026118 Unclassified 3683
129 Ga0268264_10083030 3300028381 Bacteria 2743
130 Ga0395900_0114877 3300037418 Bacteria 2763
131 Ga0395900_0132138 3300037418 Bacteria 2558
132 Ga0395905_0203304 3300037471 Bacteria 1857
133 Ga0436365_0198252 3300039437 Bacteria 179679
134 Ga0436365_0369396 3300039437 Bacteria 13961
135 Ga0451577_0046747 3300042876 Bacteria 3871
136 Ga0453684_0029524 3300044712 Bacteria 7781
137 Ga0451576_0018350 3300045051 Bacteria 7671
138 Ga0495582_0014351 3300046473 Bacteria 4355
139 Ga0495630_0000024 3300046517 Bacteria 155139
140 Ga0495663_0000063 3300046525 Bacteria 49946
141 Ga0495666_0011957 3300046526 Bacteria 4333
142 Ga0495640_0062122 3300046533 Bacteria 2535
143 Ga0495586_0000006 3300046535 Bacteria 168866
144 Ga0495586_0003923 3300046535 Bacteria 7977
145 Ga0495598_0000927 3300046537 Bacteria 5656
146 Ga0495621_0000827 3300046539 Bacteria 7848
147 Ga0495634_0008413 3300046642 Bacteria 7686
148 Ga0495599_0078823 3300046678 Unclassified 2057
149 Ga0495613_0009486 3300046689 Bacteria 7220
150 Ga0495624_0011194 3300046690 Bacteria 6172
151 Ga0495674_0000839 3300047319 Bacteria 29332
152 Ga0496113_0061494 3300048916 Bacteria 2834
153 Ga0501075_0126214 3300049591 Bacteria 1948
154 nmdc:mga05p37_58677_c1 3300050507 Bacteria 4740
155 nmdc:mga08y16_96553_c1 3300050511 Unclassified 3078
156 2920111440 2920107658 Bacteria 10042636
157 2889420942 2889415604 Bacteria 8048700
158 Ga0065715_10001648
159 Ga0065707_10112807
160 Ga0065707_10116369
161 Ga0070670_100011393
162 Ga0068869_100022447
163 Ga0070682_100000058
164 Ga0070682_100011596
165 Ga0068868_100075917
166 Ga0070687_100019671
167 Ga0070687_100024956
168 Ga0070692_10038701
169 Ga0070669_100001067
170 Ga0070669_100083591
171 Ga0070671_100010163
172 Ga0070671_100015094
173 Ga0070671_100019637
174 Ga0070671_100045407
175 Ga0070703_10000043
176 Ga0070703_10001612
177 Ga0070705_100018487
178 Ga0070694_100001183
179 Ga0070694_100017105
180 Ga0070694_100034361
181 Ga0070678_100077347
182 Ga0068867_100039517
183 Ga0070685_10058248
184 Ga0070698_100115643
185 Ga0070697_100000014
186 Ga0070686_100032342
187 Ga0070665_100036848
188 Ga0070704_100098297
189 Ga0070704_100142209
190 Ga0068855_100102068
191 Ga0068857_100020761
192 Ga0068857_100049226
193 Ga0068852_100043240
194 Ga0068859_100063399
195 Ga0068859_100066108
196 Ga0068864_100006277
197 Ga0068864_100078717
198 Ga0068851_10000668
199 Ga0068870_10067775
200 Ga0068863_100063055
201 Ga0068858_100060866
202 Ga0068862_100012944
203 Ga0068862_100078500
204 Ga0081539_10001923
205 Ga0068871_100003305
206 Ga0068871_100004889
207 Ga0068871_100020040
208 Ga0075428_100011380
209 Ga0075428_100155876
210 Ga0075433_10084064
211 Ga0068865_100062311
212 Ga0097620_100063399
213 Ga0097620_100066108
214 Ga0105240_10014319
215 Ga0105245_10009438
216 Ga0114129_10024231
217 Ga0114129_10044662
218 Ga0114129_10078976
219 Ga0114129_10356355
220 Ga0105241_10067678
221 Ga0105242_10145461
222 Ga0105248_10002850
223 Ga0105248_10065382
224 Ga0105237_10004382
225 Ga0105249_10051975
226 Ga0105249_10055221
227 Ga0105239_10023257
228 Ga0105239_10118007
229 Ga0157371_10102710
230 Ga0157374_10014190
231 Ga0157374_10215673
232 Ga0157378_10013200
233 Ga0157378_10014029
234 Ga0157378_10022945
235 Ga0157378_10094368
236 Ga0163162_10005428
237 Ga0163162_10173043
238 Ga0157372_10008428
239 Ga0157372_10036837
240 Ga0157372_10167018
241 Ga0157375_10002447
242 Ga0157375_10187463
243 Ga0163163_10180407
244 Ga0157380_10001270
245 Ga0157380_10015672
246 Ga0157380_10051931
247 Ga0157376_10003575
248 Ga0163161_10002834
249 Ga0213876_10000033
250 Ga0213876_10000143
251 Ga0224712_10014070
252 Ga0207653_10000263
253 Ga0207705_10038850
254 Ga0207695_10001167
255 Ga0207660_10091253
256 Ga0207662_10005576
257 Ga0207662_10016043
258 Ga0207662_10039800
259 Ga0207681_10004117
260 Ga0207681_10105943
261 Ga0207650_10000555
262 Ga0207650_10018894
263 Ga0207644_10023329
264 Ga0207644_10026587
265 Ga0207644_10035470
266 Ga0207644_10035619
267 Ga0207686_10000127
268 Ga0207691_10002015
269 Ga0207691_10022507
270 Ga0207691_10033284
271 Ga0207711_10010159
272 Ga0207711_10023094
273 Ga0207689_10002880
274 Ga0207689_10111483
275 Ga0207712_10079768
276 Ga0207640_10048987
277 Ga0207703_10015471
278 Ga0207639_10000924
279 Ga0207708_10035006
280 Ga0207641_10024619
281 Ga0207641_10120690
282 Ga0207674_10003614
283 Ga0207674_10062712
284 Ga0207675_100019677
285 Ga0207675_100055885
286 Ga0268264_10083030
287 Ga0395900_0114877
288 Ga0395900_0132138
289 Ga0395905_0203304
290 Ga0436365_0198252
291 Ga0436365_0369396
292 Ga0451577_0046747
293 Ga0453684_0029524
294 Ga0451576_0018350
295 Ga0495582_0014351
296 Ga0495630_0000024
297 Ga0495663_0000063
298 Ga0495666_0011957
299 Ga0495640_0062122
300 Ga0495586_0000006
301 Ga0495586_0003923
302 Ga0495598_0000927
303 Ga0495621_0000827
304 Ga0495634_0008413
305 Ga0495599_0078823
306 Ga0495613_0009486
307 Ga0495624_0011194
308 Ga0495674_0000839
309 Ga0496113_0061494
310 Ga0501075_0126214
311 nmdc:mga05p37_58677_c1
312 nmdc:mga08y16_96553_c1
313 2920111440
314 2889420942

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04389

Peptidase_M28

Peptidase family M28

373

600

0.9

PF01546

Peptidase_M20

Peptidase family M20/M25/M40

390

602

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
3khx-assembly1.cif.gz_A crystal structure of staphylococcus aureus metallopeptidase (sapep/dape) in the apo-form 0.7895 336 398
3khz-assembly1.cif.gz_A crystal structure of r350a mutant of staphylococcus aureus metallopeptidase (sapep/dape) in the apo-form 0.7879 336 398
3ki9-assembly1.cif.gz_A crystal structure of staphylococcus aureus metallopeptidase (sapep/dape) in the mn2+ bound form 0.7877 336 398
3khx-assembly2.cif.gz_B crystal structure of staphylococcus aureus metallopeptidase (sapep/dape) in the apo-form 0.7791 336 403
3iib-assembly1.cif.gz_A-2 crystal structure of peptidase m28 precursor (yp_926796.1) from shewanella amazonensis sb2b at 1.70 a resolution 0.7664 47 572
ID Description Score Start End Superfamily
3iibA01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8833 47 572 3.40.630.10
3iibA01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8573 47 572 3.40.630.10
af_B6TIJ2_17_198_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8464 335 403 3.40.630.10
3ewbX00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.8237 226 247 3.20.20.70
af_P54638_21_200_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8151 335 403 3.40.630.10
ID Description Score Start End GO Terms
AF-A0A7W1W737-F1-model_v4 Carboxypeptidase Q (Plasma glutamate carboxypeptidase) 0.9696 444 570 GO:0004180
GO:0005576
GO:0005764
GO:0070573
AF-A0A7X4FUV2-F1-model_v4 Carboxypeptidase Q (Plasma glutamate carboxypeptidase) 0.9607 336 571 GO:0004180
GO:0005576
GO:0005764
GO:0070573
AF-A0A7W1QZ37-F1-model_v4 Carboxypeptidase Q (Plasma glutamate carboxypeptidase) 0.9518 342 570 GO:0004180
GO:0005576
GO:0005764
GO:0070573
AF-A0A5C9C5U6-F1-model_v4 Peptidase M28 0.9517 445 571
AF-A0A7W1W737-F1-model_v4 Carboxypeptidase Q (Plasma glutamate carboxypeptidase) 0.9477 444 570 GO:0004180
GO:0005576
GO:0005764
GO:0070573

Map