F230884
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 158 | 129 | 152 | 891 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2786546517|2787435372 |
| Length | 1034 |
| Sequence | FLLDGMALAYRAHFALATNPIFTSRGFNTSAVYGFTNTLVDLLRNQKPTHLAVALDTSAPTQRHVDYPEYKAQREAMPEELSAALPYVRRLVEAFNIPVLVMDGYEADDIIGTYALRAEQVTEPEPFTTYMVTPDKDFGQLVSDRTLIYKPGRSGEGVEILGVKEVLEKWGIADVSQVVDILALWGDASDNIPGVPGIGEKTAQKLIAQFGSVEGLLANTAQLKGKQKENVEANRDQALLCKKLATILRDVPIEQDLEALRVRPWDEARLKPLFMELEFNSLGRRLFGEDFRAGRSGTAGMEQSLFTPATGRAASSSVFSSPLAGTTSASRAQAAAIGDDGSGGDLFELGAAARAKAAGQSSQPADASELASDTEGGEGDDGAAFDEGADVVVDSANLLNITQVTHEYSIAATPAERAALLAEMQKQPAVSFDLETTSLDARTCEIVGLAVCWEDHKAAYVPFPQGSARDEEVLELMGAISPATAASAAYHAVVEEFRPFFENAAITKIGHNIKFDYTVLRWHGITVRGPLFDTMLAHSLLEPEQRHGMDYLSEVFLGYTPIPISALIGEKRPATGRGSRSTPQTPQLNIRDVAVAKVAEYAAEDADVAWQLRGKLAPMLTEKHQEKVFFEIECPLLPVLVAMEAEGVTLDTGALSDFSGKLGRNIVALESRIYEIAGAPFNINSTRQLGEVLARVLELTGKTKKTRTGLMATDEATLLSLAGKHEIVQKVLDFREATKLKATYVDALPSAILPKTGRVHTTYNQAVTATGRLNSSDPNLQNIPIRTDQGKEIRRAFVSRGDGWLLLSADYSQIELRIIAALAGDENMRAAFESGMDIHKATAARVYGVEPENVSAEMRRSAKMVNFGIAYGLTAFGLAQRLGIPRKEAAGIISAYFRQYPGISDYMRETIDFARANGFVQTITGRRRYLRNINSSNAMVRGAAERNAINAPIQGTAADMIKIAMTNIQKALEEKRLRSRMILQVHDELVFELAEDEKTEVFALVEDGMKNAIPNLRVPIVVEMGVGRDWLTAH |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2522125168 | Dyadobacter beijingensis DSM 21582 | Isolate | Rhizosphere |
| 2 | 2786546517 | Verrucomicrobia bacterium LW23 | Isolate | Rhizoplane |
| 3 | 2818991444 | Filimonas endophytica 3197 | Isolate | Unclassified |
| 4 | 2839989709 | Pontibacter arcticus 2b14 | Isolate | Unclassified |
| 5 | 2881955468 | Edaphocola flava HME-24 | Isolate | Rhizosphere |
| 6 | 2919692658 | Algoriphagus sp. 4150 | Isolate | Rhizosphere |
| 7 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 8 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 9 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 10 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 11 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 13 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 17 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 19 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 20 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 21 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 23 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 24 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 25 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 26 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 27 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 28 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 29 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 30 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 31 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 32 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 33 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 35 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 37 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 38 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 39 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 40 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 47 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 54 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 55 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 56 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 57 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 80 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 81 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 82 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 83 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 84 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 85 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 86 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 87 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 88 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 89 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 90 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 91 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 92 | 3300039093 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 | Metagenome | Unclassified |
| 93 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 94 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 95 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 96 | 3300041406 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 | Metagenome | Rhizosphere |
| 97 | 3300042007 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 | Metagenome | Rhizosphere |
| 98 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 99 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 100 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 101 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 102 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 103 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 104 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 105 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 106 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 107 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 108 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300046531 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 114 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300048903 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled | Metagenome | Rhizoplane |
| 117 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 118 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 119 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 120 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 121 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300049766 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought | Metagenome | Rhizosphere |
| 123 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 124 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 125 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 126 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 127 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 128 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 129 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 96.2 |
| Metatranscriptomes | 0 |
| Isolates | 3.8 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 1.9 |
| Nodule | 0 |
| Rhizoplane | 3.16 |
| Rhizosphere | 87.97 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 6.96 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | rootH2_10001529 | 3300003320 | Bacteria | 89054 |
| 2 | rootL2_10005636 | 3300003322 | Bacteria | 11180 |
| 3 | rootH1_10003667 | 3300003323 | Bacteria | 128566 |
| 4 | rootH1_10008582 | 3300003323 | Bacteria | 172664 |
| 5 | Ga0065165_1003004 | 3300005262 | Bacteria | 12766 |
| 6 | Ga0070658_10034058 | 3300005327 | Bacteria | 4098 |
| 7 | Ga0070682_100026380 | 3300005337 | Bacteria | 3476 |
| 8 | Ga0070660_100039015 | 3300005339 | Bacteria | 3608 |
| 9 | Ga0070675_100000887 | 3300005354 | Bacteria | 21288 |
| 10 | Ga0070675_100001073 | 3300005354 | Bacteria | 19720 |
| 11 | Ga0070675_100003724 | 3300005354 | Bacteria | 11589 |
| 12 | Ga0070673_100000775 | 3300005364 | Bacteria | 17745 |
| 13 | Ga0070688_100011058 | 3300005365 | Bacteria | 5006 |
| 14 | Ga0070667_100000741 | 3300005367 | Bacteria | 31255 |
| 15 | Ga0070667_100006522 | 3300005367 | Bacteria | 9695 |
| 16 | Ga0070685_10009170 | 3300005466 | Bacteria | 5107 |
| 17 | Ga0070706_100003175 | 3300005467 | Bacteria | 16226 |
| 18 | Ga0070684_100003982 | 3300005535 | Bacteria | 11194 |
| 19 | Ga0070696_100023669 | 3300005546 | Bacteria | 4175 |
| 20 | Ga0068855_100000589 | 3300005563 | Bacteria | 44536 |
| 21 | Ga0068857_100001594 | 3300005577 | Bacteria | 18197 |
| 22 | Ga0068856_100005653 | 3300005614 | Bacteria | 12308 |
| 23 | Ga0068852_100000025 | 3300005616 | Bacteria | 115410 |
| 24 | Ga0068852_100011017 | 3300005616 | Bacteria | 6785 |
| 25 | Ga0068859_100001996 | 3300005617 | Bacteria | 20837 |
| 26 | Ga0068864_100002587 | 3300005618 | Bacteria | 14938 |
| 27 | Ga0068863_100004815 | 3300005841 | Bacteria | 13294 |
| 28 | Ga0068863_100011729 | 3300005841 | Bacteria | 8476 |
| 29 | Ga0068858_100003898 | 3300005842 | Bacteria | 14741 |
| 30 | Ga0068860_100014398 | 3300005843 | Bacteria | 7749 |
| 31 | Ga0081455_10015915 | 3300005937 | Bacteria | 7281 |
| 32 | Ga0081539_10000528 | 3300005985 | Bacteria | 79508 |
| 33 | Ga0070717_10000788 | 3300006028 | Bacteria | 20778 |
| 34 | Ga0070712_100008755 | 3300006175 | Bacteria | 6370 |
| 35 | Ga0097621_100001047 | 3300006237 | Bacteria | 19421 |
| 36 | Ga0068871_100026207 | 3300006358 | Bacteria | 4547 |
| 37 | Ga0075428_100034455 | 3300006844 | Bacteria | 5584 |
| 38 | Ga0075428_100041217 | 3300006844 | Bacteria | 5078 |
| 39 | Ga0075428_100084973 | 3300006844 | Bacteria | 3452 |
| 40 | Ga0075433_10011101 | 3300006852 | Bacteria | 7244 |
| 41 | Ga0075429_100008084 | 3300006880 | Bacteria | 9142 |
| 42 | Ga0097620_100001996 | 3300006931 | Bacteria | 20837 |
| 43 | Ga0105240_10000280 | 3300009093 | Bacteria | 100888 |
| 44 | Ga0111539_10009768 | 3300009094 | Bacteria | 12111 |
| 45 | Ga0111539_10022102 | 3300009094 | Bacteria | 7818 |
| 46 | Ga0114129_10086119 | 3300009147 | Bacteria | 4358 |
| 47 | Ga0105248_10006962 | 3300009177 | Bacteria | 12388 |
| 48 | Ga0105238_10001336 | 3300009551 | Bacteria | 24751 |
| 49 | Ga0105249_10049798 | 3300009553 | Bacteria | 3820 |
| 50 | Ga0157370_10000012 | 3300013104 | Bacteria | 201181 |
| 51 | Ga0157370_10010052 | 3300013104 | Bacteria | 10006 |
| 52 | Ga0157369_10000096 | 3300013105 | Bacteria | 121542 |
| 53 | Ga0157374_10075349 | 3300013296 | Bacteria | 3188 |
| 54 | Ga0157374_10077141 | 3300013296 | Bacteria | 3153 |
| 55 | Ga0157372_10000066 | 3300013307 | Bacteria | 113120 |
| 56 | Ga0157375_10000837 | 3300013308 | Bacteria | 26889 |
| 57 | Ga0157375_10007063 | 3300013308 | Bacteria | 9808 |
| 58 | Ga0163163_10000675 | 3300014325 | Bacteria | 29153 |
| 59 | Ga0163163_10033487 | 3300014325 | Bacteria | 4971 |
| 60 | Ga0157380_10018407 | 3300014326 | Bacteria | 5183 |
| 61 | Ga0157379_10000708 | 3300014968 | Bacteria | 27005 |
| 62 | Ga0163161_10058013 | 3300017792 | Bacteria | 2813 |
| 63 | Ga0209676_1000329 | 3300025292 | Bacteria | 91571 |
| 64 | Ga0207684_10001324 | 3300025910 | Bacteria | 27196 |
| 65 | Ga0207654_10000633 | 3300025911 | Bacteria | 19853 |
| 66 | Ga0207695_10000028 | 3300025913 | Bacteria | 551835 |
| 67 | Ga0207695_10007011 | 3300025913 | Bacteria | 14457 |
| 68 | Ga0207695_10021784 | 3300025913 | Bacteria | 7300 |
| 69 | Ga0207657_10046903 | 3300025919 | Bacteria | 3783 |
| 70 | Ga0207694_10001124 | 3300025924 | Bacteria | 23166 |
| 71 | Ga0207659_10001419 | 3300025926 | Bacteria | 14281 |
| 72 | Ga0207659_10002317 | 3300025926 | Bacteria | 11342 |
| 73 | Ga0207687_10007284 | 3300025927 | Bacteria | 7297 |
| 74 | Ga0207691_10004765 | 3300025940 | Bacteria | 13120 |
| 75 | Ga0207691_10049575 | 3300025940 | Bacteria | 3847 |
| 76 | Ga0207711_10004601 | 3300025941 | Bacteria | 11730 |
| 77 | Ga0207689_10037920 | 3300025942 | Bacteria | 3995 |
| 78 | Ga0207667_10030015 | 3300025949 | Bacteria | 5888 |
| 79 | Ga0207651_10000704 | 3300025960 | Bacteria | 14338 |
| 80 | Ga0207712_10029347 | 3300025961 | Bacteria | 3689 |
| 81 | Ga0207658_10002226 | 3300025986 | Bacteria | 14390 |
| 82 | Ga0207658_10011716 | 3300025986 | Bacteria | 5971 |
| 83 | Ga0207677_10020489 | 3300026023 | Bacteria | 4015 |
| 84 | Ga0207703_10039921 | 3300026035 | Bacteria | 3754 |
| 85 | Ga0207708_10018304 | 3300026075 | Bacteria | 5275 |
| 86 | Ga0207702_10014126 | 3300026078 | Bacteria | 6631 |
| 87 | Ga0207641_10002281 | 3300026088 | Bacteria | 17876 |
| 88 | Ga0207641_10035852 | 3300026088 | Bacteria | 4136 |
| 89 | Ga0207676_10005794 | 3300026095 | Bacteria | 8734 |
| 90 | Ga0207676_10018706 | 3300026095 | Bacteria | 5043 |
| 91 | Ga0207674_10008665 | 3300026116 | Bacteria | 11714 |
| 92 | Ga0207674_10015169 | 3300026116 | Bacteria | 8479 |
| 93 | Ga0207698_10000029 | 3300026142 | Bacteria | 116462 |
| 94 | Ga0207428_10027753 | 3300027907 | Bacteria | 4710 |
| 95 | Ga0265330_10000198 | 3300031235 | Bacteria | 46563 |
| 96 | Ga0265325_10000414 | 3300031241 | Bacteria | 30450 |
| 97 | Ga0265339_10003521 | 3300031249 | Bacteria | 10938 |
| 98 | Ga0265316_10000110 | 3300031344 | Bacteria | 87898 |
| 99 | Ga0265316_10000434 | 3300031344 | Bacteria | 47748 |
| 100 | Ga0307509_10016122 | 3300031507 | Bacteria | 8663 |
| 101 | Ga0265313_10007847 | 3300031595 | Bacteria | 7199 |
| 102 | Ga0265342_10001753 | 3300031712 | Bacteria | 19807 |
| 103 | Ga0307416_100019040 | 3300032002 | Bacteria | 4857 |
| 104 | Ga0307414_10000082 | 3300032004 | Bacteria | 87561 |
| 105 | Ga0316582_0000506 | 3300036647 | Bacteria | 14703 |
| 106 | Ga0316582_0006512 | 3300036647 | Bacteria | 6139 |
| 107 | Ga0395905_0040097 | 3300037471 | Bacteria | 4393 |
| 108 | Ga0400483_088786 | 3300039062 | Bacteria | 3015 |
| 109 | Ga0400489_16302 | 3300039093 | Bacteria | 3228 |
| 110 | Ga0436365_0379330 | 3300039437 | Bacteria | 12095 |
| 111 | Ga0436363_0596319 | 3300039450 | Bacteria | 8485 |
| 112 | Ga0436362_0239911 | 3300039453 | Bacteria | 6312 |
| 113 | Ga0439439_0002345 | 3300041406 | Bacteria | 4007 |
| 114 | Ga0439449_0007741 | 3300042007 | Bacteria | 4081 |
| 115 | Ga0451577_0000498 | 3300042876 | Bacteria | 66109 |
| 116 | Ga0451577_0029536 | 3300042876 | Bacteria | 4956 |
| 117 | Ga0466969_0002548 | 3300044656 | Bacteria | 9735 |
| 118 | Ga0466972_0015881 | 3300044658 | Bacteria | 3764 |
| 119 | Ga0453683_0000172 | 3300044673 | Bacteria | 89472 |
| 120 | Ga0453683_0021001 | 3300044673 | Bacteria | 4170 |
| 121 | Ga0466966_0002383 | 3300044684 | Bacteria | 12278 |
| 122 | Ga0466964_0000534 | 3300044706 | Bacteria | 11930 |
| 123 | Ga0453684_0003961 | 3300044712 | Bacteria | 32375 |
| 124 | Ga0453684_0007695 | 3300044712 | Bacteria | 19692 |
| 125 | Ga0453684_0026281 | 3300044712 | Bacteria | 8419 |
| 126 | Ga0466968_0000139 | 3300044735 | Bacteria | 21671 |
| 127 | Ga0466970_0000234 | 3300044765 | Bacteria | 27183 |
| 128 | Ga0451576_0018697 | 3300045051 | Bacteria | 7582 |
| 129 | Ga0495592_0004819 | 3300046454 | Bacteria | 9918 |
| 130 | Ga0495582_0008755 | 3300046473 | Bacteria | 5581 |
| 131 | Ga0495630_0032849 | 3300046517 | Bacteria | 3869 |
| 132 | Ga0495665_0007618 | 3300046531 | Bacteria | 5864 |
| 133 | Ga0495668_0002008 | 3300046616 | Bacteria | 17793 |
| 134 | Ga0495658_0000233 | 3300046683 | Bacteria | 31887 |
| 135 | Ga0495676_0002908 | 3300047321 | Bacteria | 15464 |
| 136 | Ga0495686_0001092 | 3300047472 | Bacteria | 32244 |
| 137 | Ga0496100_0000001 | 3300048903 | Bacteria | 530179 |
| 138 | Ga0496101_0000004 | 3300048904 | Bacteria | 331599 |
| 139 | Ga0496106_0000091 | 3300048909 | Bacteria | 71361 |
| 140 | Ga0496107_0000002 | 3300048910 | Bacteria | 320871 |
| 141 | Ga0501034_0000302 | 3300049571 | Bacteria | 87888 |
| 142 | Ga0501034_0093898 | 3300049571 | Bacteria | 2997 |
| 143 | Ga0501071_0009032 | 3300049587 | Bacteria | 6616 |
| 144 | Ga0501269_000950 | 3300049766 | Unclassified | 4224 |
| 145 | Ga0501044_0005176 | 3300049823 | Bacteria | 14522 |
| 146 | nmdc:mga08y16_29555_c1 | 3300050511 | Bacteria | 5773 |
| 147 | nmdc:mga08y16_35794_c1 | 3300050511 | Bacteria | 5214 |
| 148 | nmdc:mga0rr50_8425_c1 | 3300050513 | Bacteria | 6418 |
| 149 | nmdc:mga0a205_2482_c1 | 3300050515 | Bacteria | 16267 |
| 150 | Ga0500616_0000314 | 3300053153 | Bacteria | 69589 |
| 151 | Ga0501084_0015784 | 3300054114 | Bacteria | 6264 |
| 152 | Ga0530510_0003908 | 3300061734 | Bacteria | 10275 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300049766 | Ga0501269_000950 | Ga0501269_000950_1940_4201 | 722 |
| 2 | 3300005367 | Ga0070667_100000741 | Ga0070667_1000007415 | 771 |
| 3 | 3300005466 | Ga0070685_10009170 | Ga0070685_100091702 | 776 |
| 4 | 3300005617 | Ga0068859_100001996 | Ga0068859_10000199619 | 776 |
| 5 | 3300006931 | Ga0097620_100001996 | Ga0097620_10000199619 | 776 |
| 6 | 3300025940 | Ga0207691_10049575 | Ga0207691_100495752 | 776 |
| 7 | 3300026095 | Ga0207676_10018706 | Ga0207676_100187062 | 776 |
| 8 | 3300005354 | Ga0070675_100000887 | Ga0070675_1000008876 | 777 |
| 9 | 3300025926 | Ga0207659_10001419 | Ga0207659_1000141913 | 777 |
| 10 | 3300017792 | Ga0163161_10058013 | Ga0163161_100580131 | 783 |
| 11 | 3300049571 | Ga0501034_0093898 | Ga0501034_0093898_99_2927 | 786 |
| 12 | 3300005354 | Ga0070675_100001073 | Ga0070675_10000107314 | 791 |
| 13 | 3300005354 | Ga0070675_100003724 | Ga0070675_1000037248 | 791 |
| 14 | 3300005364 | Ga0070673_100000775 | Ga0070673_10000077512 | 791 |
| 15 | 3300005365 | Ga0070688_100011058 | Ga0070688_1000110583 | 791 |
| 16 | 3300005367 | Ga0070667_100006522 | Ga0070667_1000065224 | 791 |
| 17 | 3300005841 | Ga0068863_100004815 | Ga0068863_1000048157 | 791 |
| 18 | 3300005842 | Ga0068858_100003898 | Ga0068858_1000038983 | 791 |
| 19 | 3300005843 | Ga0068860_100014398 | Ga0068860_10001439810 | 791 |
| 20 | 3300006237 | Ga0097621_100001047 | Ga0097621_10000104718 | 791 |
| 21 | 3300006358 | Ga0068871_100026207 | Ga0068871_1000262073 | 791 |
| 22 | 3300009177 | Ga0105248_10006962 | Ga0105248_100069627 | 791 |
| 23 | 3300013296 | Ga0157374_10077141 | Ga0157374_100771412 | 791 |
| 24 | 3300013308 | Ga0157375_10000837 | Ga0157375_100008377 | 791 |
| 25 | 3300014325 | Ga0163163_10033487 | Ga0163163_100334873 | 791 |
| 26 | 3300014968 | Ga0157379_10000708 | Ga0157379_1000070820 | 791 |
| 27 | 3300025926 | Ga0207659_10002317 | Ga0207659_100023173 | 791 |
| 28 | 3300025940 | Ga0207691_10004765 | Ga0207691_100047656 | 791 |
| 29 | 3300025941 | Ga0207711_10004601 | Ga0207711_100046016 | 791 |
| 30 | 3300025960 | Ga0207651_10000704 | Ga0207651_100007043 | 791 |
| 31 | 3300025986 | Ga0207658_10011716 | Ga0207658_100117162 | 791 |
| 32 | 3300026088 | Ga0207641_10002281 | Ga0207641_100022815 | 791 |
| 33 | 3300027907 | Ga0207428_10027753 | Ga0207428_100277534 | 791 |
| 34 | 3300050511 | nmdc:mga08y16_29555_c1 | nmdc:mga08y16_29555_c1_2886_5372 | 791 |
| 35 | 3300005618 | Ga0068864_100002587 | Ga0068864_1000025873 | 794 |
| 36 | 3300009093 | Ga0105240_10000280 | Ga0105240_1000028047 | 794 |
| 37 | 3300009551 | Ga0105238_10001336 | Ga0105238_100013365 | 794 |
| 38 | 3300009553 | Ga0105249_10049798 | Ga0105249_100497982 | 794 |
| 39 | 3300013104 | Ga0157370_10000012 | Ga0157370_1000001261 | 794 |
| 40 | 3300013105 | Ga0157369_10000096 | Ga0157369_1000009665 | 794 |
| 41 | 3300013307 | Ga0157372_10000066 | Ga0157372_1000006634 | 794 |
| 42 | 3300013308 | Ga0157375_10007063 | Ga0157375_100070633 | 794 |
| 43 | 3300014325 | Ga0163163_10000675 | Ga0163163_1000067518 | 794 |
| 44 | 3300025911 | Ga0207654_10000633 | Ga0207654_100006332 | 794 |
| 45 | 3300025913 | Ga0207695_10021784 | Ga0207695_100217842 | 794 |
| 46 | 3300025924 | Ga0207694_10001124 | Ga0207694_100011242 | 794 |
| 47 | 3300025927 | Ga0207687_10007284 | Ga0207687_100072843 | 794 |
| 48 | 3300025949 | Ga0207667_10030015 | Ga0207667_100300152 | 794 |
| 49 | 3300025961 | Ga0207712_10029347 | Ga0207712_100293471 | 794 |
| 50 | 3300025986 | Ga0207658_10002226 | Ga0207658_100022269 | 794 |
| 51 | 3300026023 | Ga0207677_10020489 | Ga0207677_100204892 | 794 |
| 52 | 3300026035 | Ga0207703_10039921 | Ga0207703_100399212 | 794 |
| 53 | 3300026088 | Ga0207641_10035852 | Ga0207641_100358522 | 794 |
| 54 | 3300026095 | Ga0207676_10005794 | Ga0207676_100057942 | 794 |
| 55 | 3300026116 | Ga0207674_10015169 | Ga0207674_100151694 | 794 |
| 56 | 3300047321 | Ga0495676_0002908 | Ga0495676_0002908_4507_7134 | 794 |
| 57 | 3300048903 | Ga0496100_0000001 | Ga0496100_0000001_226256_228883 | 794 |
| 58 | 3300048904 | Ga0496101_0000004 | Ga0496101_0000004_27608_30235 | 794 |
| 59 | 3300048909 | Ga0496106_0000091 | Ga0496106_0000091_19921_22548 | 794 |
| 60 | 3300048910 | Ga0496107_0000002 | Ga0496107_0000002_19605_22232 | 794 |
| 61 | 3300025913 | Ga0207695_10007011 | Ga0207695_1000701111 | 795 |
| 62 | 3300013296 | Ga0157374_10075349 | Ga0157374_100753492 | 800 |
| 63 | 3300005535 | Ga0070684_100003982 | Ga0070684_1000039824 | 801 |
| 64 | 3300006028 | Ga0070717_10000788 | Ga0070717_1000078813 | 803 |
| 65 | 3300031235 | Ga0265330_10000198 | Ga0265330_1000019812 | 803 |
| 66 | 3300031241 | Ga0265325_10000414 | Ga0265325_100004148 | 803 |
| 67 | 3300031249 | Ga0265339_10003521 | Ga0265339_100035215 | 803 |
| 68 | 3300031344 | Ga0265316_10000110 | Ga0265316_1000011078 | 803 |
| 69 | 3300031595 | Ga0265313_10007847 | Ga0265313_100078474 | 803 |
| 70 | 3300031712 | Ga0265342_10001753 | Ga0265342_100017538 | 803 |
| 71 | 3300044673 | Ga0453683_0021001 | Ga0453683_0021001_1538_4159 | 804 |
| 72 | 3300039093 | Ga0400489_16302 | Ga0400489_16302_31_2742 | 806 |
| 73 | 3300005563 | Ga0068855_100000589 | Ga0068855_10000058933 | 807 |
| 74 | 3300005616 | Ga0068852_100000025 | Ga0068852_10000002540 | 807 |
| 75 | 3300025913 | Ga0207695_10000028 | Ga0207695_1000002877 | 807 |
| 76 | 3300026142 | Ga0207698_10000029 | Ga0207698_1000002977 | 807 |
| 77 | 3300025942 | Ga0207689_10037920 | Ga0207689_100379202 | 808 |
| 78 | 3300005546 | Ga0070696_100023669 | Ga0070696_1000236691 | 813 |
| 79 | 3300046531 | Ga0495665_0007618 | Ga0495665_0007618_103_2742 | 813 |
| 80 | 3300046454 | Ga0495592_0004819 | Ga0495592_0004819_6550_9165 | 814 |
| 81 | 3300046517 | Ga0495630_0032849 | Ga0495630_0032849_1216_3837 | 814 |
| 82 | 3300014326 | Ga0157380_10018407 | Ga0157380_100184072 | 819 |
| 83 | 3300044673 | Ga0453683_0000172 | Ga0453683_0000172_52085_54760 | 820 |
| 84 | 3300005937 | Ga0081455_10015915 | Ga0081455_100159153 | 828 |
| 85 | 3300006175 | Ga0070712_100008755 | Ga0070712_1000087555 | 828 |
| 86 | 3300006844 | Ga0075428_100041217 | Ga0075428_1000412173 | 832 |
| 87 | 3300005985 | Ga0081539_10000528 | Ga0081539_1000052845 | 834 |
| 88 | 3300006880 | Ga0075429_100008084 | Ga0075429_1000080845 | 836 |
| 89 | 3300009147 | Ga0114129_10086119 | Ga0114129_100861192 | 837 |
| 90 | 3300032002 | Ga0307416_100019040 | Ga0307416_1000190404 | 837 |
| 91 | 3300039062 | Ga0400483_088786 | Ga0400483_088786_36_2783 | 837 |
| 92 | 3300005577 | Ga0068857_100001594 | Ga0068857_10000159410 | 839 |
| 93 | 3300006844 | Ga0075428_100084973 | Ga0075428_1000849733 | 839 |
| 94 | 3300006852 | Ga0075433_10011101 | Ga0075433_100111013 | 839 |
| 95 | 3300026075 | Ga0207708_10018304 | Ga0207708_100183043 | 839 |
| 96 | 3300026116 | Ga0207674_10008665 | Ga0207674_100086655 | 839 |
| 97 | 3300009094 | Ga0111539_10022102 | Ga0111539_100221025 | 841 |
| 98 | 3300036647 | Ga0316582_0000506 | Ga0316582_0000506_144_2912 | 842 |
| 99 | 3300046473 | Ga0495582_0008755 | Ga0495582_0008755_2626_5391 | 842 |
| 100 | 3300050513 | nmdc:mga0rr50_8425_c1 | nmdc:mga0rr50_8425_c1_3549_6326 | 842 |
| 101 | 3300050515 | nmdc:mga0a205_2482_c1 | nmdc:mga0a205_2482_c1_1236_3950 | 843 |
| 102 | 3300036647 | Ga0316582_0006512 | Ga0316582_0006512_1774_4554 | 844 |
| 103 | 3300049571 | Ga0501034_0000302 | Ga0501034_0000302_72972_75758 | 844 |
| 104 | 3300049587 | Ga0501071_0009032 | Ga0501071_0009032_321_3317 | 845 |
| 105 | 3300054114 | Ga0501084_0015784 | Ga0501084_0015784_462_3458 | 845 |
| 106 | 3300061734 | Ga0530510_0003908 | Ga0530510_0003908_3149_6145 | 845 |
| 107 | 3300046683 | Ga0495658_0000233 | Ga0495658_0000233_18029_20956 | 854 |
| 108 | 3300042876 | Ga0451577_0029536 | Ga0451577_0029536_1388_4141 | 857 |
| 109 | 3300044712 | Ga0453684_0026281 | Ga0453684_0026281_2130_4883 | 857 |
| 110 | 3300045051 | Ga0451576_0018697 | Ga0451576_0018697_137_2872 | 859 |
| 111 | 3300037471 | Ga0395905_0040097 | Ga0395905_0040097_1211_4024 | 862 |
| 112 | 3300031344 | Ga0265316_10000434 | Ga0265316_1000043424 | 865 |
| 113 | iso_pu_bacteria | 2881955468 | 2881957502 | 865 |
| 114 | 3300013104 | Ga0157370_10010052 | Ga0157370_100100524 | 866 |
| 115 | iso_pu_bacteria | 2818991444 | 2819585943 | 867 |
| 116 | 3300044712 | Ga0453684_0007695 | Ga0453684_0007695_14233_17040 | 868 |
| 117 | 3300044656 | Ga0466969_0002548 | Ga0466969_0002548_1791_4883 | 870 |
| 118 | 3300044684 | Ga0466966_0002383 | Ga0466966_0002383_7573_10665 | 870 |
| 119 | 3300044706 | Ga0466964_0000534 | Ga0466964_0000534_1669_4761 | 870 |
| 120 | 3300044735 | Ga0466968_0000139 | Ga0466968_0000139_14866_17958 | 870 |
| 121 | 3300044765 | Ga0466970_0000234 | Ga0466970_0000234_7599_10691 | 870 |
| 122 | iso_pu_bacteria | 2919692658 | 2919693634 | 871 |
| 123 | 3300005327 | Ga0070658_10034058 | Ga0070658_100340582 | 872 |
| 124 | 3300005337 | Ga0070682_100026380 | Ga0070682_1000263802 | 872 |
| 125 | 3300005339 | Ga0070660_100039015 | Ga0070660_1000390152 | 872 |
| 126 | 3300005616 | Ga0068852_100011017 | Ga0068852_1000110172 | 872 |
| 127 | 3300025919 | Ga0207657_10046903 | Ga0207657_100469032 | 872 |
| 128 | 3300039437 | Ga0436365_0379330 | Ga0436365_0379330_7491_10322 | 872 |
| 129 | 3300042876 | Ga0451577_0000498 | Ga0451577_0000498_13668_16457 | 873 |
| 130 | 3300049823 | Ga0501044_0005176 | Ga0501044_0005176_5522_8617 | 873 |
| 131 | 3300005262 | Ga0065165_1003004 | Ga0065165_10030047 | 874 |
| 132 | 3300005841 | Ga0068863_100011729 | Ga0068863_1000117298 | 874 |
| 133 | 3300025292 | Ga0209676_1000329 | Ga0209676_100032913 | 874 |
| 134 | 3300032004 | Ga0307414_10000082 | Ga0307414_1000008245 | 874 |
| 135 | iso_pu_bacteria | 2786546517 | 2787435372 | 875 |
| 136 | 3300031507 | Ga0307509_10016122 | Ga0307509_100161224 | 876 |
| 137 | 3300003323 | rootH1_10008582 | rootH1_1000858245 | 877 |
| 138 | 3300039450 | Ga0436363_0596319 | Ga0436363_0596319_1975_5025 | 878 |
| 139 | 3300039453 | Ga0436362_0239911 | Ga0436362_0239911_1287_4337 | 878 |
| 140 | 3300041406 | Ga0439439_0002345 | Ga0439439_0002345_996_3848 | 878 |
| 141 | 3300042007 | Ga0439449_0007741 | Ga0439449_0007741_350_3202 | 878 |
| 142 | 3300006844 | Ga0075428_100034455 | Ga0075428_1000344552 | 879 |
| 143 | 3300044658 | Ga0466972_0015881 | Ga0466972_0015881_595_3687 | 879 |
| 144 | 3300005467 | Ga0070706_100003175 | Ga0070706_10000317511 | 880 |
| 145 | 3300005614 | Ga0068856_100005653 | Ga0068856_1000056535 | 880 |
| 146 | 3300025910 | Ga0207684_10001324 | Ga0207684_100013244 | 880 |
| 147 | 3300026078 | Ga0207702_10014126 | Ga0207702_100141264 | 880 |
| 148 | 3300044712 | Ga0453684_0003961 | Ga0453684_0003961_3105_5921 | 880 |
| 149 | 3300009094 | Ga0111539_10009768 | Ga0111539_100097683 | 881 |
| 150 | 3300047472 | Ga0495686_0001092 | Ga0495686_0001092_28200_31049 | 881 |
| 151 | 3300050511 | nmdc:mga08y16_35794_c1 | nmdc:mga08y16_35794_c1_1804_4536 | 881 |
| 152 | iso_pu_bacteria | 2522125168 | 2522551104 | 881 |
| 153 | iso_pu_bacteria | 2839989709 | 2839990710 | 881 |
| 154 | 3300046616 | Ga0495668_0002008 | Ga0495668_0002008_11943_14768 | 883 |
| 155 | 3300053153 | Ga0500616_0000314 | Ga0500616_0000314_46364_49189 | 883 |
| 156 | 3300003320 | rootH2_10001529 | rootH2_1000152958 | 889 |
| 157 | 3300003322 | rootL2_10005636 | rootL2_100056367 | 889 |
| 158 | 3300003323 | rootH1_10003667 | rootH1_1000366736 | 889 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3po4-assembly1.cif.gz_A | structure of a mutant of the large fragment of dna polymerase i from thermus aquaticus in complex with a blunt-ended dna and ddatp | 0.9491 | 337 | 888 |
| 4n56-assembly1.cif.gz_A | binary complex structure of klenow fragment of taq dna polymerase i707l mutant (cs3c klentaq) with dna | 0.9466 | 337 | 887 |
| 3sv4-assembly1.cif.gz_A | crystal structure of the large fragment of dna polymerase i from thermus aquaticus in an open binary complex with dt as templating nucleobase | 0.9464 | 314 | 888 |
| 3rr7-assembly1.cif.gz_A | binary structure of the large fragment of taq dna polymerase bound to an abasic site | 0.9464 | 337 | 888 |
| 5w6q-assembly2.cif.gz_C | structural basis for recognition of artificial dna by an evolved klentaq variant | 0.9431 | 337 | 889 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4ds5D04 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain | 0.9819 | 670 | 812 | 1.10.150.20 |
| 4ds5D04 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain | 0.9664 | 670 | 812 | 1.10.150.20 |
| af_P00582_543_658_1.20.1060.10 | Mainly Alpha;Up-down Bundle;Taq DNA Polymerase; Chain T, domain 4;Taq DNA Polymerase; Chain T, domain 4 | 0.9619 | 503 | 618 | 1.20.1060.10 |
| 4dqsA02 | Mainly Alpha;Up-down Bundle;Taq DNA Polymerase; Chain T, domain 4;Taq DNA Polymerase; Chain T, domain 4 | 0.9498 | 503 | 617 | 1.20.1060.10 |
| af_Q2FXN9_1_169_3.40.50.1010 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;5'-nuclease | 0.948 | 6 | 174 | 3.40.50.1010 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A519RVX9-F1-model_v4 | DNA-directed DNA polymerase (EC 2.7.7.7) | 0.9993 | 774 | 889 |
GO:0003677
GO:0003887 GO:0006261 GO:0006302 |
| AF-A0A2N1VET7-F1-model_v4 | DNA-directed DNA polymerase (EC 2.7.7.7) | 0.9987 | 767 | 889 |
GO:0003677
GO:0003887 GO:0006261 GO:0006302 |
| AF-A0A257TIZ0-F1-model_v4 | DNA-directed DNA polymerase (EC 2.7.7.7) | 0.9929 | 768 | 889 |
GO:0003677
GO:0003887 GO:0006261 GO:0006302 |
| AF-X1F2P7-F1-model_v4 | DNA-directed DNA polymerase family A palm domain-containing protein | 0.9922 | 750 | 876 |
GO:0003677
GO:0003887 GO:0006261 GO:0006302 |
| AF-A0A383DDN3-F1-model_v4 | DNA-directed DNA polymerase family A palm domain-containing protein | 0.9916 | 732 | 889 |
GO:0003677
GO:0003887 GO:0006261 GO:0006302 |
Predicted Structure (AlphaFold2)
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