F230534

General Info

Members Datasets Scaffolds Average Seq Length
158 114 150 253

Family's Representative Sequence

Representative Sequence 3300047472|Ga0495686_0245256|Ga0495686_0245256_37_906
Length 289
Sequence MINDLSFWHSVGPLPGNQKIKIMKSQIHEHPKETNMNVRKVVVIGGSGLIGTKVVAKIRQAGHQVIAASPAVGINTITGEGLAEALANTDVVIDLANSPSFEDKAVMEFFQTAGHNLLAAEINAGVKHHVALSIVGVDLMQDSGYMRAKKVQEDLIRQSGVPYTIIRSTQFLEFLSGIANQATEGNIVHISDVQFQPIAAEDVATFVAEAALEAPVNGIKEIAGPGRYTMPELIARYLQDTNDPRKVTPNSNSQYYGAQIGFTSLVPAGQARLGAINYETWLAYQTQHA

Samples

Sample ID Description Type Environment
1 2599185354 Sphingomonas sp. NFR15 Isolate Rhizoplane
2 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
3 2738541278 Niastella sp. CF465 Isolate Unclassified
4 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
5 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
6 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
7 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
8 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
52 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
53 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
54 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
55 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
56 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
57 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
58 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
59 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
62 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
63 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
64 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
65 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
66 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
67 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
68 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
69 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
70 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
71 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
72 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
73 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
74 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
75 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
76 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
77 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
78 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
79 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
80 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
81 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
82 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
83 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
84 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
85 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
86 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
87 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
88 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
89 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
92 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
93 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
94 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
95 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
96 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
97 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
105 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
106 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
108 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
109 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
110 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
111 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
112 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
113 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
114 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.94
Metatranscriptomes 0
Isolates 5.06

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.06
Nodule 0.63
Rhizoplane 0.63
Rhizosphere 81.01
Stem 0
Stem Tuber 0
Unclassified 12.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10174319 3300003320 Bacteria 1049
2 rootH1_10266579 3300003323 Bacteria 2202
3 Ga0068869_100240056 3300005334 Bacteria 1443
4 Ga0070666_10065035 3300005335 Bacteria 2474
5 Ga0070668_100466093 3300005347 Bacteria 1089
6 Ga0070713_100162229 3300005436 Bacteria 1996
7 Ga0070681_10084830 3300005458 Bacteria 3120
8 Ga0068867_100426532 3300005459 Bacteria 1124
9 Ga0068853_100001159 3300005539 Bacteria 18727
10 Ga0070665_100000063 3300005548 Bacteria 218300
11 Ga0068855_100066671 3300005563 Bacteria 4197
12 Ga0068854_100161428 3300005578 Bacteria 1736
13 Ga0068856_100063520 3300005614 Bacteria 3648
14 Ga0068852_100115808 3300005616 Bacteria 2444
15 Ga0068852_100899415 3300005616 Bacteria 902
16 Ga0068860_100000053 3300005843 Bacteria 207331
17 Ga0068860_100005825 3300005843 Bacteria 12407
18 Ga0068860_100657897 3300005843 Bacteria 1056
19 Ga0105240_10000195 3300009093 Bacteria 123313
20 Ga0105240_10000328 3300009093 Bacteria 89466
21 Ga0105240_10002263 3300009093 Bacteria 31206
22 Ga0105240_10004092 3300009093 Bacteria 22408
23 Ga0105240_10027856 3300009093 Bacteria 7392
24 Ga0105240_10040129 3300009093 Bacteria 5991
25 Ga0105240_10152871 3300009093 Bacteria 2747
26 Ga0111539_11027176 3300009094 Bacteria 958
27 Ga0105241_10008534 3300009174 Bacteria 7535
28 Ga0105241_10068704 3300009174 Bacteria 2746
29 Ga0105237_10002300 3300009545 Bacteria 23745
30 Ga0105237_10006570 3300009545 Bacteria 12861
31 Ga0105237_10007171 3300009545 Bacteria 12245
32 Ga0105237_10020824 3300009545 Bacteria 6753
33 Ga0105237_10050672 3300009545 Bacteria 4172
34 Ga0105237_10579901 3300009545 Bacteria 1128
35 Ga0105238_10016511 3300009551 Bacteria 7473
36 Ga0105238_10328728 3300009551 Bacteria 1515
37 Ga0105249_10395443 3300009553 Bacteria 1411
38 Ga0105239_10002354 3300010375 Bacteria 24082
39 Ga0105239_10003965 3300010375 Bacteria 17933
40 Ga0105239_10004744 3300010375 Bacteria 16140
41 Ga0105239_10030583 3300010375 Bacteria 5921
42 Ga0105239_10429039 3300010375 Bacteria 1498
43 Ga0105239_10599172 3300010375 Bacteria 1257
44 Ga0157374_10000002 3300013296 Bacteria 1054226
45 Ga0163162_10000223 3300013306 Bacteria 51991
46 Ga0157372_10016612 3300013307 Bacteria 7898
47 Ga0157372_10039530 3300013307 Bacteria 5207
48 Ga0157372_10158035 3300013307 Bacteria 2619
49 Ga0157376_10000893 3300014969 Bacteria 19513
50 Ga0163161_10138948 3300017792 Bacteria 1838
51 Ga0207680_10029567 3300025903 Bacteria 3080
52 Ga0207647_10022773 3300025904 Bacteria 4155
53 Ga0207647_10230210 3300025904 Bacteria 1066
54 Ga0207654_10002383 3300025911 Bacteria 9617
55 Ga0207707_10062443 3300025912 Bacteria 3242
56 Ga0207695_10000023 3300025913 Bacteria 657903
57 Ga0207695_10000229 3300025913 Bacteria 149313
58 Ga0207695_10004812 3300025913 Bacteria 18267
59 Ga0207695_10024898 3300025913 Bacteria 6718
60 Ga0207695_10247485 3300025913 Bacteria 1682
61 Ga0207671_10000609 3300025914 Bacteria 47411
62 Ga0207671_10001278 3300025914 Bacteria 29614
63 Ga0207671_10048322 3300025914 Bacteria 3149
64 Ga0207671_10059172 3300025914 Bacteria 2840
65 Ga0207671_10064727 3300025914 Bacteria 2718
66 Ga0207694_10040812 3300025924 Bacteria 3575
67 Ga0207667_10011013 3300025949 Bacteria 10536
68 Ga0207667_10088097 3300025949 Bacteria 3211
69 Ga0207703_10365469 3300026035 Bacteria 1332
70 Ga0207639_10006158 3300026041 Bacteria 8145
71 Ga0207702_10045694 3300026078 Bacteria 3684
72 Ga0207648_10000394 3300026089 Bacteria 48433
73 Ga0207674_10147644 3300026116 Bacteria 2309
74 Ga0207674_10207663 3300026116 Bacteria 1907
75 Ga0268266_10000057 3300028379 Bacteria 284777
76 Ga0268264_10000098 3300028381 Bacteria 229055
77 Ga0268264_10014773 3300028381 Bacteria 6414
78 Ga0307517_10137066 3300028786 Bacteria 1736
79 Ga0307517_10154413 3300028786 Bacteria 1563
80 Ga0307517_10242592 3300028786 Bacteria 1067
81 Ga0307511_10000046 3300030521 Bacteria 100284
82 Ga0307513_10412215 3300031456 Bacteria 1083
83 Ga0307508_10007092 3300031616 Bacteria 10447
84 Ga0307516_10007384 3300031730 Bacteria 12649
85 Ga0307510_10000825 3300033180 Bacteria 32314
86 Ga0373935_0282896 3300035692 Bacteria 1168
87 Ga0466972_0009857 3300044658 Bacteria 4797
88 Ga0466966_0084377 3300044684 Bacteria 1976
89 Ga0466961_0044621 3300044693 Bacteria 2837
90 Ga0466971_0010533 3300044719 Bacteria 4043
91 Ga0466970_0034535 3300044765 Bacteria 2678
92 Ga0466960_0045702 3300044901 Bacteria 2093
93 Ga0466958_0144974 3300045836 Bacteria 1496
94 Ga0495638_0022521 3300046460 Bacteria 4135
95 Ga0495650_0107464 3300046471 Bacteria 1040
96 Ga0495605_0003999 3300046474 Bacteria 8708
97 Ga0495585_0033112 3300046492 Bacteria 2927
98 Ga0495583_0056013 3300046506 Bacteria 1780
99 Ga0495606_0027021 3300046507 Bacteria 4076
100 Ga0495616_0023913 3300046513 Bacteria 3283
101 Ga0495620_0085252 3300046515 Bacteria 1273
102 Ga0495631_0002160 3300046518 Bacteria 11358
103 Ga0495632_0050314 3300046519 Bacteria 2055
104 Ga0495648_0094739 3300046524 Bacteria 1662
105 Ga0495648_0273691 3300046524 Bacteria 804
106 Ga0495642_0185038 3300046528 Bacteria 907
107 Ga0495654_0047455 3300046530 Bacteria 2111
108 Ga0495609_0015751 3300046538 Bacteria 3535
109 Ga0495668_0007117 3300046616 Bacteria 7207
110 Ga0495668_0009959 3300046616 Bacteria 5793
111 Ga0495611_0001790 3300046648 Bacteria 10332
112 Ga0495611_0013889 3300046648 Bacteria 3435
113 Ga0495625_0001563 3300046660 Bacteria 27247
114 Ga0495625_0057171 3300046660 Unclassified 2775
115 Ga0495670_0098023 3300046691 Bacteria 1507
116 Ga0495649_0031464 3300046694 Bacteria 2926
117 Ga0495672_0032066 3300047320 Bacteria 3273
118 Ga0495672_0033327 3300047320 Bacteria 3191
119 Ga0495687_000006 3300047443 Bacteria 571936
120 Ga0495677_0167871 3300047445 Unclassified 848
121 Ga0495685_060415 3300047447 Unclassified 1278
122 Ga0495686_0000309 3300047472 Bacteria 82637
123 Ga0495686_0245256 3300047472 Unclassified 1009
124 Ga0496119_0008541 3300048922 Bacteria 8981
125 Ga0496121_0002737 3300048924 Bacteria 26253
126 Ga0496122_0001001 3300048925 Bacteria 50171
127 Ga0496123_0002319 3300048926 Bacteria 23906
128 Ga0496124_0001076 3300048927 Bacteria 43141
129 Ga0496126_0041212 3300048929 Bacteria 4275
130 Ga0495678_020747 3300049459 Bacteria 2903
131 Ga0495682_0026113 3300049460 Bacteria 2171
132 Ga0501033_0082716 3300049570 Bacteria 2354
133 Ga0501034_0002226 3300049571 Bacteria 23906
134 Ga0501037_0017582 3300049573 Bacteria 5263
135 Ga0501038_0073036 3300049574 Bacteria 2906
136 Ga0501039_0261272 3300049575 Bacteria 1361
137 Ga0501043_0006937 3300049579 Bacteria 9032
138 Ga0501047_0104458 3300049581 Bacteria 2713
139 Ga0501219_000102 3300049703 Bacteria 14894
140 Ga0501241_004660 3300049758 Bacteria 2559
141 Ga0501035_0003921 3300049822 Bacteria 14188
142 Ga0501284_00057 3300050005 Bacteria 40428
143 Ga0500569_002171 3300053109 Bacteria 3825
144 Ga0500594_0001281 3300053118 Bacteria 5458
145 Ga0500618_005973 3300053125 Bacteria 3630
146 Ga0500642_0017857 3300053130 Bacteria 2730
147 Ga0500568_0078537 3300053139 Bacteria 1255
148 Ga0500622_0001237 3300053156 Bacteria 20921
149 Ga0500622_0001932 3300053156 Bacteria 15629
150 Ga0500645_030823 3300053730 Bacteria 1613

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300017792 Ga0163161_10138948 Ga0163161_101389482 218
2 3300005458 Ga0070681_10084830 Ga0070681_100848304 242
3 3300025912 Ga0207707_10062443 Ga0207707_100624431 242
4 iso_pu_bacteria 2919186247 2919190481 243
5 iso_pu_bacteria 2939664404 2939668762 243
6 iso_pu_bacteria 2599185354 2600203784 247
7 iso_pu_bacteria 2643221643 2644238851 247
8 iso_pu_bacteria 2738541278 2738730247 247
9 iso_pu_bacteria 2818991438 2819554655 247
10 iso_pu_bacteria 2842333319 2842340541 247
11 iso_pu_bacteria 2929921140 2929924873 247
12 3300046471 Ga0495650_0107464 Ga0495650_0107464_16_765 249
13 3300048922 Ga0496119_0008541 Ga0496119_0008541_3941_4693 250
14 3300048925 Ga0496122_0001001 Ga0496122_0001001_47327_48079 250
15 3300048926 Ga0496123_0002319 Ga0496123_0002319_20772_21524 250
16 3300003320 rootH2_10174319 rootH2_101743191 251
17 3300003323 rootH1_10266579 rootH1_102665792 251
18 3300005334 Ga0068869_100240056 Ga0068869_1002400562 251
19 3300005335 Ga0070666_10065035 Ga0070666_100650352 251
20 3300005347 Ga0070668_100466093 Ga0070668_1004660931 251
21 3300005436 Ga0070713_100162229 Ga0070713_1001622291 251
22 3300005459 Ga0068867_100426532 Ga0068867_1004265322 251
23 3300005539 Ga0068853_100001159 Ga0068853_1000011598 251
24 3300005548 Ga0070665_100000063 Ga0070665_100000063108 251
25 3300005563 Ga0068855_100066671 Ga0068855_1000666714 251
26 3300005578 Ga0068854_100161428 Ga0068854_1001614282 251
27 3300005614 Ga0068856_100063520 Ga0068856_1000635202 251
28 3300005616 Ga0068852_100115808 Ga0068852_1001158084 251
29 3300005616 Ga0068852_100899415 Ga0068852_1008994152 251
30 3300005843 Ga0068860_100000053 Ga0068860_10000005382 251
31 3300005843 Ga0068860_100005825 Ga0068860_1000058258 251
32 3300005843 Ga0068860_100657897 Ga0068860_1006578971 251
33 3300009093 Ga0105240_10000195 Ga0105240_1000019569 251
34 3300009093 Ga0105240_10000328 Ga0105240_1000032867 251
35 3300009093 Ga0105240_10002263 Ga0105240_100022636 251
36 3300009093 Ga0105240_10004092 Ga0105240_100040922 251
37 3300009093 Ga0105240_10027856 Ga0105240_100278566 251
38 3300009093 Ga0105240_10040129 Ga0105240_100401294 251
39 3300009093 Ga0105240_10152871 Ga0105240_101528712 251
40 3300009094 Ga0111539_11027176 Ga0111539_110271761 251
41 3300009174 Ga0105241_10008534 Ga0105241_100085343 251
42 3300009174 Ga0105241_10068704 Ga0105241_100687044 251
43 3300009545 Ga0105237_10002300 Ga0105237_100023008 251
44 3300009545 Ga0105237_10006570 Ga0105237_100065709 251
45 3300009545 Ga0105237_10007171 Ga0105237_1000717111 251
46 3300009545 Ga0105237_10020824 Ga0105237_100208242 251
47 3300009545 Ga0105237_10050672 Ga0105237_100506726 251
48 3300009545 Ga0105237_10579901 Ga0105237_105799012 251
49 3300009551 Ga0105238_10016511 Ga0105238_100165115 251
50 3300009551 Ga0105238_10328728 Ga0105238_103287282 251
51 3300009553 Ga0105249_10395443 Ga0105249_103954432 251
52 3300010375 Ga0105239_10002354 Ga0105239_1000235421 251
53 3300010375 Ga0105239_10003965 Ga0105239_1000396515 251
54 3300010375 Ga0105239_10004744 Ga0105239_100047447 251
55 3300010375 Ga0105239_10030583 Ga0105239_1003058310 251
56 3300010375 Ga0105239_10429039 Ga0105239_104290392 251
57 3300010375 Ga0105239_10599172 Ga0105239_105991722 251
58 3300013296 Ga0157374_10000002 Ga0157374_10000002472 251
59 3300013306 Ga0163162_10000223 Ga0163162_1000022311 251
60 3300013307 Ga0157372_10016612 Ga0157372_100166125 251
61 3300013307 Ga0157372_10039530 Ga0157372_100395303 251
62 3300013307 Ga0157372_10158035 Ga0157372_101580354 251
63 3300014969 Ga0157376_10000893 Ga0157376_100008936 251
64 3300025903 Ga0207680_10029567 Ga0207680_100295672 251
65 3300025904 Ga0207647_10022773 Ga0207647_100227732 251
66 3300025904 Ga0207647_10230210 Ga0207647_102302102 251
67 3300025911 Ga0207654_10002383 Ga0207654_100023833 251
68 3300025913 Ga0207695_10000023 Ga0207695_10000023105 251
69 3300025913 Ga0207695_10000229 Ga0207695_1000022943 251
70 3300025913 Ga0207695_10004812 Ga0207695_100048126 251
71 3300025913 Ga0207695_10024898 Ga0207695_100248988 251
72 3300025913 Ga0207695_10247485 Ga0207695_102474852 251
73 3300025914 Ga0207671_10000609 Ga0207671_100006094 251
74 3300025914 Ga0207671_10001278 Ga0207671_100012784 251
75 3300025914 Ga0207671_10048322 Ga0207671_100483225 251
76 3300025914 Ga0207671_10059172 Ga0207671_100591723 251
77 3300025914 Ga0207671_10064727 Ga0207671_100647272 251
78 3300025924 Ga0207694_10040812 Ga0207694_100408122 251
79 3300025949 Ga0207667_10011013 Ga0207667_100110138 251
80 3300025949 Ga0207667_10088097 Ga0207667_100880974 251
81 3300026035 Ga0207703_10365469 Ga0207703_103654691 251
82 3300026041 Ga0207639_10006158 Ga0207639_100061586 251
83 3300026078 Ga0207702_10045694 Ga0207702_100456942 251
84 3300026089 Ga0207648_10000394 Ga0207648_1000039420 251
85 3300026116 Ga0207674_10147644 Ga0207674_101476441 251
86 3300026116 Ga0207674_10207663 Ga0207674_102076634 251
87 3300028379 Ga0268266_10000057 Ga0268266_10000057167 251
88 3300028381 Ga0268264_10000098 Ga0268264_1000009881 251
89 3300028381 Ga0268264_10014773 Ga0268264_100147732 251
90 3300028786 Ga0307517_10137066 Ga0307517_101370662 251
91 3300028786 Ga0307517_10154413 Ga0307517_101544132 251
92 3300028786 Ga0307517_10242592 Ga0307517_102425922 251
93 3300030521 Ga0307511_10000046 Ga0307511_1000004610 251
94 3300031456 Ga0307513_10412215 Ga0307513_104122151 251
95 3300031616 Ga0307508_10007092 Ga0307508_100070924 251
96 3300031730 Ga0307516_10007384 Ga0307516_100073848 251
97 3300033180 Ga0307510_10000825 Ga0307510_100008258 251
98 3300035692 Ga0373935_0282896 Ga0373935_0282896_11_805 251
99 3300044658 Ga0466972_0009857 Ga0466972_0009857_2957_3712 251
100 3300044684 Ga0466966_0084377 Ga0466966_0084377_344_1105 251
101 3300044693 Ga0466961_0044621 Ga0466961_0044621_14_775 251
102 3300044719 Ga0466971_0010533 Ga0466971_0010533_1827_2588 251
103 3300044765 Ga0466970_0034535 Ga0466970_0034535_958_1761 251
104 3300044901 Ga0466960_0045702 Ga0466960_0045702_744_1499 251
105 3300045836 Ga0466958_0144974 Ga0466958_0144974_548_1309 251
106 3300046460 Ga0495638_0022521 Ga0495638_0022521_2757_3512 251
107 3300046474 Ga0495605_0003999 Ga0495605_0003999_4253_5008 251
108 3300046492 Ga0495585_0033112 Ga0495585_0033112_1618_2373 251
109 3300046506 Ga0495583_0056013 Ga0495583_0056013_937_1692 251
110 3300046507 Ga0495606_0027021 Ga0495606_0027021_1806_2561 251
111 3300046513 Ga0495616_0023913 Ga0495616_0023913_726_1481 251
112 3300046515 Ga0495620_0085252 Ga0495620_0085252_419_1174 251
113 3300046518 Ga0495631_0002160 Ga0495631_0002160_3759_4514 251
114 3300046519 Ga0495632_0050314 Ga0495632_0050314_703_1458 251
115 3300046524 Ga0495648_0094739 Ga0495648_0094739_88_843 251
116 3300046524 Ga0495648_0273691 Ga0495648_0273691_39_794 251
117 3300046528 Ga0495642_0185038 Ga0495642_0185038_118_873 251
118 3300046530 Ga0495654_0047455 Ga0495654_0047455_1326_2081 251
119 3300046538 Ga0495609_0015751 Ga0495609_0015751_1458_2213 251
120 3300046616 Ga0495668_0007117 Ga0495668_0007117_5758_6513 251
121 3300046616 Ga0495668_0009959 Ga0495668_0009959_1986_2741 251
122 3300046648 Ga0495611_0001790 Ga0495611_0001790_1988_2743 251
123 3300046648 Ga0495611_0013889 Ga0495611_0013889_987_1742 251
124 3300046660 Ga0495625_0001563 Ga0495625_0001563_16090_16845 251
125 3300046660 Ga0495625_0057171 Ga0495625_0057171_1673_2473 251
126 3300046691 Ga0495670_0098023 Ga0495670_0098023_538_1293 251
127 3300046694 Ga0495649_0031464 Ga0495649_0031464_855_1610 251
128 3300047320 Ga0495672_0032066 Ga0495672_0032066_870_1625 251
129 3300047320 Ga0495672_0033327 Ga0495672_0033327_514_1269 251
130 3300047443 Ga0495687_000006 Ga0495687_000006_434956_435738 251
131 3300047445 Ga0495677_0167871 Ga0495677_0167871_23_832 251
132 3300047447 Ga0495685_060415 Ga0495685_060415_196_1005 251
133 3300047472 Ga0495686_0000309 Ga0495686_0000309_25473_26228 251
134 3300047472 Ga0495686_0245256 Ga0495686_0245256_37_906 251
135 3300048924 Ga0496121_0002737 Ga0496121_0002737_14522_15283 251
136 3300048927 Ga0496124_0001076 Ga0496124_0001076_7206_7967 251
137 3300048929 Ga0496126_0041212 Ga0496126_0041212_2533_3294 251
138 3300049459 Ga0495678_020747 Ga0495678_020747_973_1728 251
139 3300049460 Ga0495682_0026113 Ga0495682_0026113_664_1419 251
140 3300049570 Ga0501033_0082716 Ga0501033_0082716_1538_2293 251
141 3300049571 Ga0501034_0002226 Ga0501034_0002226_6198_7031 251
142 3300049573 Ga0501037_0017582 Ga0501037_0017582_3034_3867 251
143 3300049574 Ga0501038_0073036 Ga0501038_0073036_1081_1836 251
144 3300049575 Ga0501039_0261272 Ga0501039_0261272_266_1099 251
145 3300049579 Ga0501043_0006937 Ga0501043_0006937_4376_5209 251
146 3300049581 Ga0501047_0104458 Ga0501047_0104458_423_1256 251
147 3300049703 Ga0501219_000102 Ga0501219_000102_10429_11184 251
148 3300049758 Ga0501241_004660 Ga0501241_004660_442_1197 251
149 3300049822 Ga0501035_0003921 Ga0501035_0003921_8344_9177 251
150 3300050005 Ga0501284_00057 Ga0501284_00057_24606_25361 251
151 3300053109 Ga0500569_002171 Ga0500569_002171_1763_2518 251
152 3300053118 Ga0500594_0001281 Ga0500594_0001281_3404_4159 251
153 3300053125 Ga0500618_005973 Ga0500618_005973_1650_2405 251
154 3300053130 Ga0500642_0017857 Ga0500642_0017857_525_1280 251
155 3300053139 Ga0500568_0078537 Ga0500568_0078537_146_901 251
156 3300053156 Ga0500622_0001237 Ga0500622_0001237_5558_6313 251
157 3300053156 Ga0500622_0001932 Ga0500622_0001932_2062_2817 251
158 3300053730 Ga0500645_030823 Ga0500645_030823_231_986 251

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05368

NmrA

NmrA-like family

73

280

0.78

PF13460

NAD_binding_10

NAD(P)H-binding

45

214

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jkg-assembly1.cif.gz_A the nad+-free form of human nsdhl 0.8673 2 130
6jkh-assembly1.cif.gz_B the nad+-bound form of human nsdhl 0.8567 2 129
5gpn-assembly1.cif.gz_p architecture of mammalian respirasome 0.8462 1 214
6jkh-assembly1.cif.gz_A the nad+-bound form of human nsdhl 0.846 2 130
7ard-assembly1.cif.gz_P cryo-em structure of polytomella complex-i (complete composition) 0.8446 2 211
ID Description Score Start End Superfamily
af_P75822_3_266_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.852 1 212 3.40.50.720
af_Q9SK66_71_329_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8349 4 212 3.40.50.720
af_A0A0N7KJR7_8_180_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8206 2 99 3.40.50.720
af_Q4DUZ8_1_205_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.816 1 129 3.40.50.720
2c59B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8135 1 130 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2V7CXT5-F1-model_v4 NmrA family transcriptional regulator 1.002 1 129
AF-A0A1G9U2B0-F1-model_v4 NAD(P)H-binding 0.9979 1 141
AF-H0G2Z3-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9973 1 112
AF-A0A2V6I120-F1-model_v4 NmrA family transcriptional regulator 0.9969 1 119
AF-A0A2V6TUZ8-F1-model_v4 NmrA family transcriptional regulator 0.9943 1 87

Feature Viewer

pLDDT pTM Quality
94.98 0.92 High
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Predicted Structure (AlphaFold2)

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