F230332

General Info

Members Datasets Scaffolds Average Seq Length
158 34 316 125

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0307834|Ga0453684_0307834_998_1456
Length 152
Sequence MSLNRHIPSFLAKIGNQYKTINIRRKREMAVKLEIYKCNLCGNVVELLHGGDGDLVCCGQPMVLMKENTVDAAKEKHVPVMEKTPDGIRVRVGSVAHPMEEKHYIEWIELIADGKAYRQFLKPGDKPEALFTVKADQVTVREYCNLHGVWKS

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
3 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
4 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
5 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
6 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
7 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
8 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
9 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
10 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
11 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
12 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
13 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
14 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
15 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
19 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
20 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
21 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
22 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
23 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
24 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
25 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
26 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
27 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
28 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
29 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
30 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
31 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
32 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
33 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
34 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 51.9
Metatranscriptomes 48.1
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 94.94
Stem 0
Stem Tuber 0
Unclassified 4.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0307834 3300044712 Bacteria 1799
2 Ga0265328_10020533 3300031239 Bacteria 2528
3 Ga0265327_10063810 3300031251 Bacteria 1869
4 Ga0265316_10474408 3300031344 Bacteria 896
5 Ga0316575_10040944 3300031665 Bacteria 1831
6 Ga0316575_10042113 3300031665 Bacteria 1808
7 Ga0316579_10002544 3300031691 Bacteria 6895
8 Ga0316579_10098990 3300031691 Bacteria 1395
9 Ga0316579_10338495 3300031691 Archaea 728
10 Ga0316579_10415142 3300031691 Bacteria 651
11 Ga0316579_10570270 3300031691 Bacteria 548
12 Ga0265314_10156143 3300031711 Unclassified 1393
13 Ga0265342_10190607 3300031712 Bacteria 1119
14 Ga0316576_10034396 3300031727 Bacteria 3611
15 Ga0316576_10066268 3300031727 Bacteria 2655
16 Ga0316576_10069890 3300031727 Bacteria 2589
17 Ga0316576_10081211 3300031727 Bacteria 2405
18 Ga0316578_10014546 3300031728 Bacteria 4207
19 Ga0316578_10014893 3300031728 Bacteria 4168
20 Ga0316578_10137965 3300031728 Bacteria 1468
21 Ga0316577_10005449 3300031733 Bacteria 6673
22 Ga0316577_10017053 3300031733 Bacteria 4007
23 Ga0316577_10043924 3300031733 Bacteria 2500
24 Ga0316577_10073109 3300031733 Bacteria 1914
25 Ga0316577_10225599 3300031733 Bacteria 1059
26 Ga0316577_10625924 3300031733 Unclassified 612
27 Ga0316583_10006829 3300032133 Bacteria 4111
28 Ga0316583_10033044 3300032133 Bacteria 1838
29 Ga0316583_10057971 3300032133 Bacteria 1359
30 Ga0316585_10007223 3300032137 Bacteria 3196
31 Ga0316585_10011340 3300032137 Bacteria 2628
32 Ga0316585_10019078 3300032137 Bacteria 2087
33 Ga0316585_10115137 3300032137 Archaea 884
34 Ga0316580_10019407 3300032139 Bacteria 2092
35 Ga0316580_10020888 3300032139 Bacteria 2017
36 Ga0316580_10121283 3300032139 Bacteria 800
37 Ga0316593_10001053 3300032168 Bacteria 5758
38 Ga0316593_10001659 3300032168 Bacteria 5010
39 Ga0316593_10001711 3300032168 Bacteria 4958
40 Ga0316593_10002244 3300032168 Bacteria 4525
41 Ga0316593_10007134 3300032168 Bacteria 3055
42 Ga0316593_10012971 3300032168 Bacteria 2457
43 Ga0316593_10021818 3300032168 Bacteria 2006
44 Ga0316593_10022214 3300032168 Bacteria 1992
45 Ga0316593_10024541 3300032168 Unclassified 1912
46 Ga0316593_10036132 3300032168 Unclassified 1628
47 Ga0316593_10036774 3300032168 Bacteria 1615
48 Ga0316593_10038345 3300032168 Bacteria 1586
49 Ga0316593_10045671 3300032168 Bacteria 1468
50 Ga0316593_10046369 3300032168 Bacteria 1459
51 Ga0316593_10046447 3300032168 Bacteria 1458
52 Ga0316593_10062763 3300032168 Bacteria 1273
53 Ga0316593_10071707 3300032168 Bacteria 1199
54 Ga0316593_10073567 3300032168 Bacteria 1184
55 Ga0316593_10078041 3300032168 Bacteria 1152
56 Ga0316593_10097449 3300032168 Bacteria 1040
57 Ga0316593_10105256 3300032168 Bacteria 1004
58 Ga0316593_10136522 3300032168 Unclassified 887
59 Ga0316593_10168170 3300032168 Bacteria 803
60 Ga0316593_10207065 3300032168 Bacteria 726
61 Ga0316593_10207843 3300032168 Bacteria 725
62 Ga0316593_10216314 3300032168 Bacteria 711
63 Ga0316593_10231636 3300032168 Bacteria 688
64 Ga0316593_10264118 3300032168 Bacteria 646
65 Ga0316593_10282125 3300032168 Bacteria 626
66 Ga0316593_10329104 3300032168 Unclassified 582
67 Ga0316592_1000779 3300033524 Bacteria 4748
68 Ga0316592_1001000 3300033524 Bacteria 4366
69 Ga0316592_1002966 3300033524 Bacteria 2998
70 Ga0316592_1010288 3300033524 Bacteria 1884
71 Ga0316592_1019068 3300033524 Bacteria 1449
72 Ga0316592_1020090 3300033524 Bacteria 1416
73 Ga0316592_1035721 3300033524 Bacteria 1090
74 Ga0316592_1046748 3300033524 Bacteria 964
75 Ga0316592_1047173 3300033524 Bacteria 960
76 Ga0316592_1072954 3300033524 Bacteria 777
77 Ga0316592_1085963 3300033524 Bacteria 717
78 Ga0316592_1090995 3300033524 Bacteria 698
79 Ga0316592_1108720 3300033524 Bacteria 640
80 Ga0316592_1125678 3300033524 Bacteria 597
81 Ga0316586_1000425 3300033527 Bacteria 4072
82 Ga0316586_1003423 3300033527 Bacteria 2081
83 Ga0316588_1009115 3300033528 Bacteria 2062
84 Ga0316588_1015142 3300033528 Bacteria 1696
85 Ga0316588_1020345 3300033528 Bacteria 1502
86 Ga0316588_1038618 3300033528 Bacteria 1138
87 Ga0316588_1059685 3300033528 Bacteria 930
88 Ga0316588_1062556 3300033528 Bacteria 909
89 Ga0316588_1094667 3300033528 Bacteria 746
90 Ga0316588_1114837 3300033528 Bacteria 679
91 Ga0316588_1138224 3300033528 Bacteria 622
92 Ga0316587_1002513 3300033529 Bacteria 2455
93 Ga0316587_1010588 3300033529 Bacteria 1476
94 Ga0316587_1014228 3300033529 Bacteria 1312
95 Ga0316587_1027410 3300033529 Bacteria 996
96 Ga0316587_1051714 3300033529 Bacteria 753
97 Ga0316596_1000732 3300033541 Bacteria 5996
98 Ga0316596_1001203 3300033541 Bacteria 5104
99 Ga0316596_1002236 3300033541 Bacteria 4103
100 Ga0316596_1005509 3300033541 Bacteria 2896
101 Ga0316596_1008211 3300033541 Bacteria 2483
102 Ga0316596_1021173 3300033541 Bacteria 1657
103 Ga0316596_1023994 3300033541 Bacteria 1565
104 Ga0316596_1033812 3300033541 Bacteria 1333
105 Ga0316596_1037833 3300033541 Bacteria 1263
106 Ga0316596_1040992 3300033541 Bacteria 1217
107 Ga0316596_1050555 3300033541 Bacteria 1100
108 Ga0316596_1053404 3300033541 Bacteria 1072
109 Ga0316596_1111786 3300033541 Bacteria 741
110 Ga0316596_1120822 3300033541 Bacteria 713
111 Ga0316596_1125362 3300033541 Bacteria 700
112 Ga0316596_1127004 3300033541 Unclassified 695
113 Ga0373953_0433853 3300035117 Bacteria 580
114 Ga0316574_0013240 3300035398 Bacteria 4736
115 Ga0316574_0024903 3300035398 Bacteria 3586
116 Ga0316574_0141631 3300035398 Bacteria 1549
117 Ga0316582_0007598 3300036647 Bacteria 5778
118 Ga0316582_0009943 3300036647 Bacteria 5187
119 Ga0316582_0070368 3300036647 Bacteria 2263
120 Ga0316582_0080888 3300036647 Bacteria 2121
121 Ga0316582_0103939 3300036647 Bacteria 1884
122 Ga0316582_0129442 3300036647 Bacteria 1694
123 Ga0316582_0150808 3300036647 Bacteria 1571
124 Ga0316582_0474542 3300036647 Archaea 862
125 Ga0316582_0517041 3300036647 Bacteria 823
126 Ga0316582_0741928 3300036647 Bacteria 674
127 Ga0316582_0851989 3300036647 Bacteria 624
128 Ga0316584_0028226 3300036712 Bacteria 4135
129 Ga0316584_0032115 3300036712 Bacteria 3884
130 Ga0316584_0048889 3300036712 Bacteria 3160
131 Ga0316584_0308283 3300036712 Bacteria 1145
132 Ga0316584_0349094 3300036712 Bacteria 1062
133 Ga0316581_0032268 3300037588 Bacteria 1580
134 Ga0316581_0233125 3300037588 Bacteria 566
135 Ga0400484_08123 3300038725 Bacteria 6591
136 Ga0400490_04521 3300038726 Bacteria 8693
137 Ga0400490_09791 3300038726 Bacteria 1671
138 Ga0400485_17162 3300038735 Bacteria 11537
139 Ga0400486_07465 3300038742 Bacteria 26936
140 Ga0400486_10278 3300038742 Bacteria 6788
141 Ga0400483_137949 3300039062 Bacteria 72420
142 Ga0400487_42170 3300039110 Bacteria 1262
143 Ga0451577_0175831 3300042876 Bacteria 1930
144 Ga0451577_1631604 3300042876 Bacteria 568
145 Ga0453683_0000168 3300044673 Bacteria 91041
146 Ga0453684_0003445 3300044712 Bacteria 35638
147 Ga0453684_0013601 3300044712 Bacteria 13190
148 Ga0453684_0014455 3300044712 Bacteria 12627
149 Ga0453684_0020882 3300044712 Bacteria 9829
150 Ga0453684_0051558 3300044712 Bacteria 5391
151 Ga0453684_0133631 3300044712 Bacteria 2974
152 Ga0453684_0154024 3300044712 Bacteria 2728
153 Ga0453684_0199815 3300044712 Bacteria 2331
154 Ga0453684_0200394 3300044712 Bacteria 2327
155 Ga0453684_0260342 3300044712 Bacteria 1987
156 Ga0453684_0579937 3300044712 Bacteria 1232
157 Ga0451576_0000011 3300045051 Bacteria 676436
158 Ga0451576_0824931 3300045051 Bacteria 974
159 Ga0453684_0307834
160 Ga0265328_10020533
161 Ga0265327_10063810
162 Ga0265316_10474408
163 Ga0316575_10040944
164 Ga0316575_10042113
165 Ga0316579_10002544
166 Ga0316579_10098990
167 Ga0316579_10338495
168 Ga0316579_10415142
169 Ga0316579_10570270
170 Ga0265314_10156143
171 Ga0265342_10190607
172 Ga0316576_10034396
173 Ga0316576_10066268
174 Ga0316576_10069890
175 Ga0316576_10081211
176 Ga0316578_10014546
177 Ga0316578_10014893
178 Ga0316578_10137965
179 Ga0316577_10005449
180 Ga0316577_10017053
181 Ga0316577_10043924
182 Ga0316577_10073109
183 Ga0316577_10225599
184 Ga0316577_10625924
185 Ga0316583_10006829
186 Ga0316583_10033044
187 Ga0316583_10057971
188 Ga0316585_10007223
189 Ga0316585_10011340
190 Ga0316585_10019078
191 Ga0316585_10115137
192 Ga0316580_10019407
193 Ga0316580_10020888
194 Ga0316580_10121283
195 Ga0316593_10001053
196 Ga0316593_10001659
197 Ga0316593_10001711
198 Ga0316593_10002244
199 Ga0316593_10007134
200 Ga0316593_10012971
201 Ga0316593_10021818
202 Ga0316593_10022214
203 Ga0316593_10024541
204 Ga0316593_10036132
205 Ga0316593_10036774
206 Ga0316593_10038345
207 Ga0316593_10045671
208 Ga0316593_10046369
209 Ga0316593_10046447
210 Ga0316593_10062763
211 Ga0316593_10071707
212 Ga0316593_10073567
213 Ga0316593_10078041
214 Ga0316593_10097449
215 Ga0316593_10105256
216 Ga0316593_10136522
217 Ga0316593_10168170
218 Ga0316593_10207065
219 Ga0316593_10207843
220 Ga0316593_10216314
221 Ga0316593_10231636
222 Ga0316593_10264118
223 Ga0316593_10282125
224 Ga0316593_10329104
225 Ga0316592_1000779
226 Ga0316592_1001000
227 Ga0316592_1002966
228 Ga0316592_1010288
229 Ga0316592_1019068
230 Ga0316592_1020090
231 Ga0316592_1035721
232 Ga0316592_1046748
233 Ga0316592_1047173
234 Ga0316592_1072954
235 Ga0316592_1085963
236 Ga0316592_1090995
237 Ga0316592_1108720
238 Ga0316592_1125678
239 Ga0316586_1000425
240 Ga0316586_1003423
241 Ga0316588_1009115
242 Ga0316588_1015142
243 Ga0316588_1020345
244 Ga0316588_1038618
245 Ga0316588_1059685
246 Ga0316588_1062556
247 Ga0316588_1094667
248 Ga0316588_1114837
249 Ga0316588_1138224
250 Ga0316587_1002513
251 Ga0316587_1010588
252 Ga0316587_1014228
253 Ga0316587_1027410
254 Ga0316587_1051714
255 Ga0316596_1000732
256 Ga0316596_1001203
257 Ga0316596_1002236
258 Ga0316596_1005509
259 Ga0316596_1008211
260 Ga0316596_1021173
261 Ga0316596_1023994
262 Ga0316596_1033812
263 Ga0316596_1037833
264 Ga0316596_1040992
265 Ga0316596_1050555
266 Ga0316596_1053404
267 Ga0316596_1111786
268 Ga0316596_1120822
269 Ga0316596_1125362
270 Ga0316596_1127004
271 Ga0373953_0433853
272 Ga0316574_0013240
273 Ga0316574_0024903
274 Ga0316574_0141631
275 Ga0316582_0007598
276 Ga0316582_0009943
277 Ga0316582_0070368
278 Ga0316582_0080888
279 Ga0316582_0103939
280 Ga0316582_0129442
281 Ga0316582_0150808
282 Ga0316582_0474542
283 Ga0316582_0517041
284 Ga0316582_0741928
285 Ga0316582_0851989
286 Ga0316584_0028226
287 Ga0316584_0032115
288 Ga0316584_0048889
289 Ga0316584_0308283
290 Ga0316584_0349094
291 Ga0316581_0032268
292 Ga0316581_0233125
293 Ga0400484_08123
294 Ga0400490_04521
295 Ga0400490_09791
296 Ga0400485_17162
297 Ga0400486_07465
298 Ga0400486_10278
299 Ga0400483_137949
300 Ga0400487_42170
301 Ga0451577_0175831
302 Ga0451577_1631604
303 Ga0453683_0000168
304 Ga0453684_0003445
305 Ga0453684_0013601
306 Ga0453684_0014455
307 Ga0453684_0020882
308 Ga0453684_0051558
309 Ga0453684_0133631
310 Ga0453684_0154024
311 Ga0453684_0199815
312 Ga0453684_0200394
313 Ga0453684_0260342
314 Ga0453684_0579937
315 Ga0451576_0000011
316 Ga0451576_0824931

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06397

Desulfoferrod_N

Desulfoferrodoxin, N-terminal domain

30

65

0.96

PF01880

Desulfoferrodox

Desulfoferrodoxin

69

152

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1dcd-assembly1.cif.gz_A desulforedoxin complexed with cd2+ 1.001 2 36
1dcd-assembly1.cif.gz_B desulforedoxin complexed with cd2+ 0.9993 2 36
1dhg-assembly1.cif.gz_A hg-substituted desulforedoxin 0.9987 2 36
1dxg-assembly1.cif.gz_B crystal structure of desulforedoxin from desulfovibrio gigas at 1.8 a resolution 0.9942 2 36
1cfw-assembly1.cif.gz_A ga-substituted desulforedoxin 0.9915 2 36
ID Description Score Start End Superfamily
2ji2C01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9883 1 39 2.20.28.100
2ji3C01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9826 1 39 2.20.28.100
1vzgB01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9727 2 39 2.20.28.100
1vzhA01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9655 2 39 2.20.28.100
2ji2C01 Mainly Beta;Single Sheet;Rubrerythrin, domain 2;Desulphoferrodoxin, N-terminal domain 0.9643 1 39 2.20.28.100
ID Description Score Start End GO Terms
AF-A0A537YLE7-F1-model_v4 Desulfoferrodoxin 1.008 2 36 GO:0005506
AF-A0A7V5N2I2-F1-model_v4 Desulfoferrodoxin FeS4 iron-binding domain-containing protein 1.006 1 36 GO:0005506
AF-D6STN9-F1-model_v4 Desulfoferrodoxin Dfx domain protein 1.004 1 36 GO:0005506
AF-A0A7V2XXT6-F1-model_v4 Desulfoferrodoxin FeS4 iron-binding domain-containing protein 1.003 1 36 GO:0005506
AF-A0A550G875-F1-model_v4 Desulfoferrodoxin FeS4 iron-binding domain-containing protein 1.003 1 37 GO:0005506

Map