F230303

General Info

Members Datasets Scaffolds Average Seq Length
158 124 316 205

Family's Representative Sequence

Representative Sequence 3300044658|Ga0466972_0102008|Ga0466972_0102008_259_942
Length 227
Sequence MRYIGFRSRRAAVTNGDNLRVTTGADLLTLSPVIPVVVVDDADHAVPLAQALLRGGVRVIELTLRTPAALAAIENVAREVPEIVIGAGTVTAPEHAEQAAKAGAAFLVTPGTTDRVLDAADATGLPYLPGAATVSEVLRLAERGLTALKFFPAEAAGGVDYLKSIGGPVPHVRFCPTGGITPQTAPNYLALANVGCVGGSWLAPKDALANGDWERIETLAREASQLG

Samples

Sample ID Description Type Environment
1 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
13 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
14 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
15 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
16 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
17 3300012478 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610 Metagenome Rhizosphere
18 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
19 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
36 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
37 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
38 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
39 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
40 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
41 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
42 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
43 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
46 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
47 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
48 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
49 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
50 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
51 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
52 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
53 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
54 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
55 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
56 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
57 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
58 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
59 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
60 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
61 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
62 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
63 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
64 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
65 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
66 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
67 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
68 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
69 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
70 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
71 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
72 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
73 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
74 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
75 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
89 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
90 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
91 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
92 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
93 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
94 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
100 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
103 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
104 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
105 2558860280 Kutzneria sp. 744 Isolate Unclassified
106 2582580736 Prauserella sp. Am3 Isolate Unclassified
107 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
108 2643221547 Pseudolabrys sp. Root1462 Isolate Unclassified
109 2643221615 Nocardioides sp. Root224 Isolate Unclassified
110 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
111 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
112 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
113 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
114 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
115 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
116 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
117 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
118 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
119 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
120 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
121 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
122 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
123 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
124 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 86.08
Metatranscriptomes 1.27
Isolates 12.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.16
Nodule 0
Rhizoplane 8.23
Rhizosphere 73.42
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466972_0102008 3300044658 Bacteria 1357
2 Ga0070683_100199628 3300005329 Bacteria 1899
3 Ga0068868_100367529 3300005338 Bacteria 1235
4 Ga0070689_101404121 3300005340 Bacteria 631
5 Ga0070669_100569331 3300005353 Bacteria 946
6 Ga0070709_10982564 3300005434 Bacteria 671
7 Ga0070710_10000470 3300005437 Bacteria 18972
8 Ga0070708_100317222 3300005445 Bacteria 1468
9 Ga0070708_100575246 3300005445 Bacteria 1062
10 Ga0070663_100034673 3300005455 Bacteria 3496
11 Ga0070678_100282356 3300005456 Bacteria 1404
12 Ga0070698_100032133 3300005471 Bacteria 5438
13 Ga0068852_100057283 3300005616 Bacteria 3372
14 Ga0068870_10053523 3300005840 Bacteria 2144
15 Ga0105251_10007431 3300009011 Bacteria 6749
16 Ga0105245_10244434 3300009098 Bacteria 1741
17 Ga0105245_10503590 3300009098 Bacteria 1227
18 Ga0105238_10014242 3300009551 Bacteria 8042
19 Ga0105238_11089225 3300009551 Bacteria 821
20 Ga0157328_1002777 3300012478 Bacteria 869
21 Ga0157369_10598304 3300013105 Bacteria 1138
22 Ga0157369_11381218 3300013105 Bacteria 717
23 Ga0207692_10004299 3300025898 Bacteria 5632
24 Ga0207662_10064152 3300025918 Bacteria 2209
25 Ga0207687_10044748 3300025927 Bacteria 3057
26 Ga0207687_10522785 3300025927 Bacteria 993
27 Ga0207686_10828306 3300025934 Bacteria 743
28 Ga0207661_10522662 3300025944 Bacteria 1086
29 Ga0207668_10012837 3300025972 Bacteria 5139
30 Ga0207639_10141027 3300026041 Bacteria 2008
31 Ga0207678_10000166 3300026067 Bacteria 55793
32 Ga0207708_10078591 3300026075 Bacteria 2533
33 Ga0207648_10197701 3300026089 Bacteria 1783
34 Ga0207648_10822049 3300026089 Bacteria 866
35 Ga0207676_10091476 3300026095 Bacteria 2500
36 Ga0207675_100448721 3300026118 Bacteria 1278
37 Ga0207683_10355957 3300026121 Bacteria 1344
38 Ga0207698_11314851 3300026142 Bacteria 738
39 Ga0268266_10397451 3300028379 Bacteria 1303
40 Ga0307515_10042505 3300028794 Bacteria 7105
41 Ga0307511_10000482 3300030521 Bacteria 43322
42 Ga0316177_1063862 3300030731 Bacteria 2599
43 Ga0316176_1193244 3300030732 Bacteria 11905
44 Ga0314311_1145313 3300030733 Bacteria 2958
45 Ga0316180_1049724 3300030736 Bacteria 2170
46 Ga0307509_10375800 3300031507 Bacteria 1136
47 Ga0307518_10000154 3300031838 Bacteria 50652
48 Ga0307406_10689232 3300031901 Bacteria 852
49 Ga0307407_10132479 3300031903 Bacteria 1597
50 Ga0307409_100067258 3300031995 Bacteria 2829
51 Ga0307411_10016606 3300032005 Bacteria 4170
52 Ga0307411_10620806 3300032005 Bacteria 932
53 Ga0307507_10185194 3300033179 Bacteria 1478
54 Ga0307510_10010213 3300033180 Bacteria 11163
55 Ga0373925_0052816 3300037068 Bacteria 3037
56 Ga0395900_0025826 3300037418 Bacteria 6013
57 Ga0395898_0280998 3300037466 Bacteria 1588
58 Ga0395901_0001632 3300038443 Bacteria 23197
59 Ga0395901_0083746 3300038443 Bacteria 3334
60 Ga0466969_0051453 3300044656 Bacteria 2027
61 Ga0466972_0004226 3300044658 Bacteria 7176
62 Ga0466972_0036610 3300044658 Bacteria 2400
63 Ga0466965_0094410 3300044683 Bacteria 1524
64 Ga0466965_0236017 3300044683 Bacteria 978
65 Ga0466966_0128602 3300044684 Bacteria 1552
66 Ga0466966_0270832 3300044684 Bacteria 1022
67 Ga0466966_0296928 3300044684 Bacteria 971
68 Ga0466961_0143937 3300044693 Bacteria 1491
69 Ga0466961_0420803 3300044693 Bacteria 810
70 Ga0466971_0107133 3300044719 Bacteria 1288
71 Ga0466968_0364934 3300044735 Bacteria 703
72 Ga0466970_0004494 3300044765 Bacteria 6876
73 Ga0466970_0035622 3300044765 Bacteria 2636
74 Ga0466957_0046111 3300044842 Bacteria 2645
75 Ga0466960_0000960 3300044901 Bacteria 10239
76 Ga0466959_0296925 3300045049 Bacteria 1107
77 Ga0466967_0000594 3300045976 Bacteria 17970
78 Ga0466967_0468610 3300045976 Bacteria 1233
79 Ga0466967_0486543 3300045976 Bacteria 1209
80 Ga0496100_0119566 3300048903 Bacteria 1841
81 Ga0496102_0437918 3300048905 Bacteria 1227
82 Ga0496103_0087841 3300048906 Bacteria 1960
83 Ga0496104_0359139 3300048907 Bacteria 1369
84 Ga0496105_0075321 3300048908 Bacteria 2787
85 Ga0496105_0653827 3300048908 Bacteria 811
86 Ga0496106_0060653 3300048909 Bacteria 2867
87 Ga0496109_0040820 3300048912 Bacteria 4203
88 Ga0496109_0628568 3300048912 Bacteria 1010
89 Ga0496110_0314360 3300048913 Bacteria 1426
90 Ga0496112_0023339 3300048915 Bacteria 5909
91 Ga0496112_0072852 3300048915 Bacteria 3396
92 Ga0496114_0178775 3300048917 Bacteria 1852
93 Ga0501311_001495 3300049527 Bacteria 2047
94 Ga0501316_018465 3300049532 Bacteria 862
95 Ga0501031_0007720 3300049568 Bacteria 7002
96 Ga0501032_0006000 3300049569 Bacteria 8962
97 Ga0501033_0001049 3300049570 Bacteria 25208
98 Ga0501033_0106167 3300049570 Bacteria 2046
99 Ga0501034_0002829 3300049571 Bacteria 20228
100 Ga0501034_0138096 3300049571 Bacteria 2418
101 Ga0501036_0037344 3300049572 Bacteria 4109
102 Ga0501036_0473805 3300049572 Bacteria 1042
103 Ga0501037_0022395 3300049573 Bacteria 4674
104 Ga0501037_0085665 3300049573 Bacteria 2281
105 Ga0501038_0001733 3300049574 Bacteria 20297
106 Ga0501038_0039254 3300049574 Bacteria 4141
107 Ga0501038_0201986 3300049574 Bacteria 1595
108 Ga0501039_0009449 3300049575 Bacteria 7434
109 Ga0501039_0591074 3300049575 Bacteria 870
110 Ga0501042_0024818 3300049578 Bacteria 4208
111 Ga0501043_0008794 3300049579 Bacteria 7947
112 Ga0501043_0060707 3300049579 Bacteria 2968
113 Ga0501043_0904738 3300049579 Bacteria 633
114 Ga0501046_0004692 3300049580 Bacteria 12336
115 Ga0501046_0012340 3300049580 Bacteria 7279
116 Ga0501047_0090282 3300049581 Bacteria 2940
117 Ga0501047_0213003 3300049581 Bacteria 1790
118 Ga0501048_0009595 3300049582 Bacteria 7262
119 Ga0501048_0134299 3300049582 Bacteria 1748
120 Ga0501067_0037901 3300049583 Bacteria 2677
121 Ga0501067_0153151 3300049583 Bacteria 1284
122 Ga0501068_0132783 3300049584 Bacteria 1557
123 Ga0501069_0026169 3300049585 Bacteria 3194
124 Ga0501070_0240863 3300049586 Bacteria 1481
125 Ga0501074_0275910 3300049590 Bacteria 1195
126 Ga0501075_0744694 3300049591 Bacteria 746
127 Ga0501077_0183124 3300049593 Bacteria 1331
128 Ga0501083_0203332 3300049744 Bacteria 1292
129 Ga0501035_0042940 3300049822 Bacteria 4075
130 Ga0501035_0149231 3300049822 Bacteria 2029
131 Ga0501044_0588565 3300049823 Bacteria 1006
132 Ga0501045_0053922 3300049824 Bacteria 2939
133 nmdc:mga0yw44_41106_c1 3300050492 Bacteria 2750
134 nmdc:mga06z11_200708_c1 3300050494 Bacteria 1158
135 nmdc:mga08y16_367795_c1 3300050511 Bacteria 1475
136 Ga0500556_0001094 3300053104 Bacteria 13591
137 Ga0500593_000635 3300053117 Bacteria 13503
138 Ga0500573_0041970 3300053140 Bacteria 2641
139 2559430254 2558860280 Bacteria 11429938
140 2583152827 2582580736 Bacteria 5325865
141 2586062744 2585427649 Bacteria 9053857
142 2643754786 2643221547 Bacteria 4740017
143 2644093037 2643221615 Bacteria 5487866
144 2644322648 2643221657 Bacteria 5490246
145 2753070252 2751185734 Bacteria 8863695
146 2774395223 2773857762 Bacteria 5971770
147 2809193943 2808606439 Bacteria 5952208
148 2809588073 2808606522 Bacteria 9488490
149 2812348684 2811994878 Bacteria 5992952
150 2857483158 2857481737 Bacteria 4761446
151 2866615103 2866612099 Bacteria 7543886
152 2870729944 2870721527 Bacteria 9689237
153 2891973581 2891968417 Bacteria 5821697
154 2899363913 2899359706 Bacteria 10940472
155 2915773594 2915768154 Bacteria 8424322
156 2917741837 2917736166 Bacteria 9690793
157 8003318008 8003314358 Bacteria 10575343
158 8047711802 8047710418 Bacteria 11023148
159 Ga0466972_0102008
160 Ga0070683_100199628
161 Ga0068868_100367529
162 Ga0070689_101404121
163 Ga0070669_100569331
164 Ga0070709_10982564
165 Ga0070710_10000470
166 Ga0070708_100317222
167 Ga0070708_100575246
168 Ga0070663_100034673
169 Ga0070678_100282356
170 Ga0070698_100032133
171 Ga0068852_100057283
172 Ga0068870_10053523
173 Ga0105251_10007431
174 Ga0105245_10244434
175 Ga0105245_10503590
176 Ga0105238_10014242
177 Ga0105238_11089225
178 Ga0157328_1002777
179 Ga0157369_10598304
180 Ga0157369_11381218
181 Ga0207692_10004299
182 Ga0207662_10064152
183 Ga0207687_10044748
184 Ga0207687_10522785
185 Ga0207686_10828306
186 Ga0207661_10522662
187 Ga0207668_10012837
188 Ga0207639_10141027
189 Ga0207678_10000166
190 Ga0207708_10078591
191 Ga0207648_10197701
192 Ga0207648_10822049
193 Ga0207676_10091476
194 Ga0207675_100448721
195 Ga0207683_10355957
196 Ga0207698_11314851
197 Ga0268266_10397451
198 Ga0307515_10042505
199 Ga0307511_10000482
200 Ga0316177_1063862
201 Ga0316176_1193244
202 Ga0314311_1145313
203 Ga0316180_1049724
204 Ga0307509_10375800
205 Ga0307518_10000154
206 Ga0307406_10689232
207 Ga0307407_10132479
208 Ga0307409_100067258
209 Ga0307411_10016606
210 Ga0307411_10620806
211 Ga0307507_10185194
212 Ga0307510_10010213
213 Ga0373925_0052816
214 Ga0395900_0025826
215 Ga0395898_0280998
216 Ga0395901_0001632
217 Ga0395901_0083746
218 Ga0466969_0051453
219 Ga0466972_0004226
220 Ga0466972_0036610
221 Ga0466965_0094410
222 Ga0466965_0236017
223 Ga0466966_0128602
224 Ga0466966_0270832
225 Ga0466966_0296928
226 Ga0466961_0143937
227 Ga0466961_0420803
228 Ga0466971_0107133
229 Ga0466968_0364934
230 Ga0466970_0004494
231 Ga0466970_0035622
232 Ga0466957_0046111
233 Ga0466960_0000960
234 Ga0466959_0296925
235 Ga0466967_0000594
236 Ga0466967_0468610
237 Ga0466967_0486543
238 Ga0496100_0119566
239 Ga0496102_0437918
240 Ga0496103_0087841
241 Ga0496104_0359139
242 Ga0496105_0075321
243 Ga0496105_0653827
244 Ga0496106_0060653
245 Ga0496109_0040820
246 Ga0496109_0628568
247 Ga0496110_0314360
248 Ga0496112_0023339
249 Ga0496112_0072852
250 Ga0496114_0178775
251 Ga0501311_001495
252 Ga0501316_018465
253 Ga0501031_0007720
254 Ga0501032_0006000
255 Ga0501033_0001049
256 Ga0501033_0106167
257 Ga0501034_0002829
258 Ga0501034_0138096
259 Ga0501036_0037344
260 Ga0501036_0473805
261 Ga0501037_0022395
262 Ga0501037_0085665
263 Ga0501038_0001733
264 Ga0501038_0039254
265 Ga0501038_0201986
266 Ga0501039_0009449
267 Ga0501039_0591074
268 Ga0501042_0024818
269 Ga0501043_0008794
270 Ga0501043_0060707
271 Ga0501043_0904738
272 Ga0501046_0004692
273 Ga0501046_0012340
274 Ga0501047_0090282
275 Ga0501047_0213003
276 Ga0501048_0009595
277 Ga0501048_0134299
278 Ga0501067_0037901
279 Ga0501067_0153151
280 Ga0501068_0132783
281 Ga0501069_0026169
282 Ga0501070_0240863
283 Ga0501074_0275910
284 Ga0501075_0744694
285 Ga0501077_0183124
286 Ga0501083_0203332
287 Ga0501035_0042940
288 Ga0501035_0149231
289 Ga0501044_0588565
290 Ga0501045_0053922
291 nmdc:mga0yw44_41106_c1
292 nmdc:mga06z11_200708_c1
293 nmdc:mga08y16_367795_c1
294 Ga0500556_0001094
295 Ga0500593_000635
296 Ga0500573_0041970
297 2559430254
298 2583152827
299 2586062744
300 2643754786
301 2644093037
302 2644322648
303 2753070252
304 2774395223
305 2809193943
306 2809588073
307 2812348684
308 2857483158
309 2866615103
310 2870729944
311 2891973581
312 2899363913
313 2915773594
314 2917741837
315 8003318008
316 8047711802

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01081

Aldolase

KDPG and KHG aldolase

25

219

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ovi-assembly1.cif.gz_B crystal structure of kdpg aldolase from legionella pneumophila with pyruvate captured at low ph as a covalent carbinolamine intermediate 0.9826 6 202
1eua-assembly1.cif.gz_B schiff base intermediate in kdpg aldolase from escherichia coli 0.9783 2 204
1fwr-assembly1.cif.gz_C crystal structure of kdpg aldolase double mutant k133q/t161k 0.9757 2 204
4e38-assembly1.cif.gz_C crystal structure of probable keto-hydroxyglutarate-aldolase from vibrionales bacterium swat-3 (target efi-502156) 0.9743 6 200
4bk9-assembly1.cif.gz_C crystal structure of 2-keto-3-deoxy-6-phospho-gluconate aldolase from zymomonas mobilis atcc 29191 0.9721 6 205
ID Description Score Start End Superfamily
4bk9A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9729 6 205 3.20.20.70
1mxsA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9713 6 204 3.20.20.70
3vcrA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9615 7 204 3.20.20.70
1vhcB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9548 6 204 3.20.20.70
1mxsA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.939 6 204 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A1I3E2F5-F1-model_v4 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) 0.9998 13 205 GO:0008675
AF-A0A7K0DDZ0-F1-model_v4 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) 0.9974 4 205 GO:0008675
AF-A0A1M6LU92-F1-model_v4 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) 0.9973 6 202 GO:0008675
AF-A0A1H4QXN4-F1-model_v4 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) 0.9973 5 202 GO:0008675
AF-A0A4R1HKH0-F1-model_v4 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) 0.997 2 205 GO:0008675

Map