F229696

General Info

Members Datasets Scaffolds Average Seq Length
158 108 316 189

Family's Representative Sequence

Representative Sequence 3300013297|Ga0157378_10001125|Ga0157378_1000112519
Length 214
Sequence LPGCQVANGIDRATQQPSNHFGNPATGQPGNRMIGYLEGTLKQLDATRALVLAGGVGYEVHISLQTYYKLEGQKSVALQIYTHVREDALSLYGFGSGEEKFAFEKLISISGIGPTLAQKILSGIDAPDLAEAVTRGDVRIILELRDKLLIPESARQETPSARTSVDDDVHSALINLGYKPRDAETALEMARKELGNEAELSALLKAALRQLTRS

Samples

Sample ID Description Type Environment
1 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
11 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
16 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
17 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
30 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
31 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
32 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
37 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
38 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
43 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
61 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
62 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
86 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
87 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
90 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
93 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
96 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
97 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
98 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
99 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
100 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
101 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
102 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
108 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.63
Rhizosphere 91.14
Stem 0
Stem Tuber 0
Unclassified 9.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157378_10001125 3300013297 Bacteria 24380
2 Ga0065707_10103373 3300005295 Bacteria 2752
3 Ga0070658_10153645 3300005327 Bacteria 1928
4 Ga0070683_100000045 3300005329 Bacteria 97310
5 Ga0070670_100000341 3300005331 Bacteria 39086
6 Ga0070670_100138742 3300005331 Bacteria 2102
7 Ga0070670_101176277 3300005331 Unclassified 700
8 Ga0068869_100016315 3300005334 Bacteria 5004
9 Ga0070680_100016605 3300005336 Bacteria 5794
10 Ga0070682_100186861 3300005337 Bacteria 1452
11 Ga0070689_100141834 3300005340 Bacteria 1932
12 Ga0070689_100264931 3300005340 Bacteria 1421
13 Ga0070687_100002890 3300005343 Bacteria 6572
14 Ga0070687_100334010 3300005343 Bacteria 973
15 Ga0070692_10069460 3300005345 Bacteria 1874
16 Ga0070675_100000021 3300005354 Bacteria 161258
17 Ga0070674_100127127 3300005356 Unclassified 1895
18 Ga0070674_100233609 3300005356 Bacteria 1436
19 Ga0070709_10231636 3300005434 Bacteria 1322
20 Ga0070713_100001776 3300005436 Bacteria 13908
21 Ga0070713_101077664 3300005436 Bacteria 776
22 Ga0070701_10063639 3300005438 Bacteria 1952
23 Ga0070711_100487876 3300005439 Bacteria 1014
24 Ga0070700_100000014 3300005441 Bacteria 156712
25 Ga0070708_100014336 3300005445 Bacteria 6519
26 Ga0070708_100359778 3300005445 Bacteria 1372
27 Ga0070685_10019458 3300005466 Bacteria 3663
28 Ga0070706_100020825 3300005467 Bacteria 6038
29 Ga0070706_100104823 3300005467 Bacteria 2630
30 Ga0070706_100210655 3300005467 Bacteria 1815
31 Ga0070706_100559250 3300005467 Bacteria 1064
32 Ga0070707_100072927 3300005468 Bacteria 3310
33 Ga0070707_100146671 3300005468 Bacteria 2297
34 Ga0070707_100254813 3300005468 Unclassified 1708
35 Ga0070707_100792182 3300005468 Unclassified 912
36 Ga0070698_100038825 3300005471 Bacteria 4906
37 Ga0070698_100116017 3300005471 Unclassified 2641
38 Ga0070698_100956612 3300005471 Bacteria 803
39 Ga0070699_100030341 3300005518 Bacteria 4666
40 Ga0070699_100055315 3300005518 Bacteria 3436
41 Ga0070679_100864055 3300005530 Unclassified 848
42 Ga0070684_100000169 3300005535 Bacteria 44981
43 Ga0070697_100056053 3300005536 Bacteria 3205
44 Ga0070697_100446925 3300005536 Bacteria 1126
45 Ga0070697_100503023 3300005536 Unclassified 1060
46 Ga0070672_100204700 3300005543 Bacteria 1651
47 Ga0070686_100514235 3300005544 Unclassified 931
48 Ga0070693_100110615 3300005547 Bacteria 1689
49 Ga0070704_100701160 3300005549 Bacteria 898
50 Ga0070664_100490884 3300005564 Bacteria 1131
51 Ga0068857_100037102 3300005577 Bacteria 4317
52 Ga0070702_100175736 3300005615 Bacteria 1397
53 Ga0068859_101249308 3300005617 Bacteria 818
54 Ga0068861_100027172 3300005719 Bacteria 4166
55 Ga0068870_10296468 3300005840 Bacteria 1019
56 Ga0070717_10000022 3300006028 Bacteria 161825
57 Ga0070717_10434145 3300006028 Bacteria 1182
58 Ga0070717_10867252 3300006028 Bacteria 822
59 Ga0075428_100021761 3300006844 Bacteria 7099
60 Ga0075431_100005984 3300006847 Bacteria 12051
61 Ga0075434_100115978 3300006871 Bacteria 2691
62 Ga0075434_100398590 3300006871 Unclassified 1397
63 Ga0075429_100114652 3300006880 Bacteria 2356
64 Ga0075436_100010446 3300006914 Bacteria 6363
65 Ga0097620_100831963 3300006931 Bacteria 1010
66 Ga0097620_101249533 3300006931 Bacteria 818
67 Ga0075435_100000056 3300007076 Bacteria 58362
68 Ga0075435_100040482 3300007076 Bacteria 3721
69 Ga0075435_100053465 3300007076 Bacteria 3257
70 Ga0105244_10017839 3300009036 Bacteria 3999
71 Ga0105240_10040218 3300009093 Bacteria 5983
72 Ga0111539_10000016 3300009094 Bacteria 276730
73 Ga0105245_10345620 3300009098 Bacteria 1472
74 Ga0105242_10007081 3300009176 Bacteria 8664
75 Ga0105238_10000001 3300009551 Bacteria 2036163
76 Ga0105239_10027759 3300010375 Bacteria 6228
77 Ga0157369_10004088 3300013105 Bacteria 17277
78 Ga0157369_10268884 3300013105 Bacteria 1777
79 Ga0157374_10000022 3300013296 Bacteria 270307
80 Ga0157378_10000034 3300013297 Bacteria 120274
81 Ga0157378_10489840 3300013297 Unclassified 1226
82 Ga0157372_10417806 3300013307 Bacteria 1563
83 Ga0157375_10000054 3300013308 Bacteria 126807
84 Ga0157375_10000329 3300013308 Bacteria 42630
85 Ga0163163_10144308 3300014325 Bacteria 2423
86 Ga0157377_10000009 3300014745 Bacteria 385287
87 Ga0157377_10000122 3300014745 Bacteria 50493
88 Ga0157376_10000024 3300014969 Bacteria 220018
89 Ga0213873_10000001 3300021358 Bacteria 1657979
90 Ga0213876_10000002 3300021384 Bacteria 1168769
91 Ga0213876_10000375 3300021384 Bacteria 38082
92 Ga0213876_10001257 3300021384 Bacteria 15995
93 Ga0213876_10022985 3300021384 Bacteria 3294
94 Ga0213876_10087397 3300021384 Bacteria 1650
95 Ga0213876_10239707 3300021384 Bacteria 964
96 Ga0207684_10161003 3300025910 Bacteria 1933
97 Ga0207695_10144590 3300025913 Bacteria 2323
98 Ga0207660_10012494 3300025917 Bacteria 5557
99 Ga0207662_10005887 3300025918 Bacteria 6576
100 Ga0207662_10086993 3300025918 Bacteria 1916
101 Ga0207646_10019005 3300025922 Bacteria 6398
102 Ga0207646_10036242 3300025922 Bacteria 4453
103 Ga0207646_10231054 3300025922 Bacteria 1671
104 Ga0207646_10391703 3300025922 Unclassified 1255
105 Ga0207694_10000001 3300025924 Bacteria 4078485
106 Ga0207650_10000060 3300025925 Bacteria 150844
107 Ga0207650_10079969 3300025925 Bacteria 2477
108 Ga0207659_10000056 3300025926 Bacteria 73171
109 Ga0207700_10009125 3300025928 Bacteria 6177
110 Ga0207686_10030749 3300025934 Bacteria 3183
111 Ga0207670_10074582 3300025936 Bacteria 2356
112 Ga0207669_10173610 3300025937 Bacteria 1537
113 Ga0207665_10023751 3300025939 Bacteria 4038
114 Ga0207665_10433183 3300025939 Bacteria 1006
115 Ga0207691_10465855 3300025940 Bacteria 1075
116 Ga0207689_10005968 3300025942 Bacteria 10775
117 Ga0207689_10355178 3300025942 Bacteria 1219
118 Ga0207661_10000007 3300025944 Bacteria 471636
119 Ga0207640_10002045 3300025981 Bacteria 10908
120 Ga0207677_10000433 3300026023 Bacteria 28244
121 Ga0207639_10000003 3300026041 Bacteria 806887
122 Ga0207708_10000012 3300026075 Bacteria 207611
123 Ga0207674_10018719 3300026116 Bacteria 7517
124 Ga0207675_100061738 3300026118 Bacteria 3499
125 Ga0207683_10250901 3300026121 Bacteria 1615
126 Ga0207428_10000020 3300027907 Bacteria 276713
127 Ga0307511_10009189 3300030521 Bacteria 9849
128 Ga0307412_10323692 3300031911 Bacteria 1228
129 Ga0307416_100239717 3300032002 Bacteria 1756
130 Ga0373932_0001701 3300035112 Bacteria 5982
131 Ga0373943_0057478 3300035170 Bacteria 1933
132 Ga0436365_0190860 3300039437 Bacteria 42582
133 Ga0436365_0487307 3300039437 Bacteria 11346
134 Ga0436365_0576559 3300039437 Bacteria 21960
135 Ga0436365_1065350 3300039437 Bacteria 21502
136 Ga0436365_1258604 3300039437 Bacteria 831
137 Ga0436362_0649416 3300039453 Bacteria 210038
138 Ga0436362_0924283 3300039453 Bacteria 7937
139 Ga0451839_0156625 3300041496 Bacteria 2398
140 Ga0451577_0655232 3300042876 Unclassified 952
141 Ga0466960_0299034 3300044901 Bacteria 906
142 Ga0451576_0864418 3300045051 Unclassified 949
143 Ga0495620_0176275 3300046515 Bacteria 827
144 Ga0495679_020838 3300047446 Bacteria 2276
145 Ga0496106_1085978 3300048909 Bacteria 627
146 Ga0501073_0039548 3300049589 Bacteria 3340
147 nmdc:mga05p37_240229_c1 3300050507 Bacteria 2178
148 nmdc:mga09592_273900_c1 3300050508 Bacteria 1464
149 nmdc:mga06r32_4261_c2 3300050510 Bacteria 6499
150 nmdc:mga08y16_20_c1 3300050511 Bacteria 276739
151 nmdc:mga0n895_118998_c1 3300050512 Bacteria 2662
152 nmdc:mga0n895_209165_c1 3300050512 Bacteria 1981
153 nmdc:mga0n895_411230_c1 3300050512 Unclassified 1368
154 nmdc:mga0rr50_302221_c1 3300050513 Unclassified 1339
155 nmdc:mga0rr50_32443_c1 3300050513 Bacteria 3721
156 nmdc:mga0rr50_40_c1 3300050513 Bacteria 83054
157 nmdc:mga08x19_3063_c1 3300050514 Bacteria 10045
158 Ga0495655_0000473 3300053083 Bacteria 6746
159 Ga0157378_10001125
160 Ga0065707_10103373
161 Ga0070658_10153645
162 Ga0070683_100000045
163 Ga0070670_100000341
164 Ga0070670_100138742
165 Ga0070670_101176277
166 Ga0068869_100016315
167 Ga0070680_100016605
168 Ga0070682_100186861
169 Ga0070689_100141834
170 Ga0070689_100264931
171 Ga0070687_100002890
172 Ga0070687_100334010
173 Ga0070692_10069460
174 Ga0070675_100000021
175 Ga0070674_100127127
176 Ga0070674_100233609
177 Ga0070709_10231636
178 Ga0070713_100001776
179 Ga0070713_101077664
180 Ga0070701_10063639
181 Ga0070711_100487876
182 Ga0070700_100000014
183 Ga0070708_100014336
184 Ga0070708_100359778
185 Ga0070685_10019458
186 Ga0070706_100020825
187 Ga0070706_100104823
188 Ga0070706_100210655
189 Ga0070706_100559250
190 Ga0070707_100072927
191 Ga0070707_100146671
192 Ga0070707_100254813
193 Ga0070707_100792182
194 Ga0070698_100038825
195 Ga0070698_100116017
196 Ga0070698_100956612
197 Ga0070699_100030341
198 Ga0070699_100055315
199 Ga0070679_100864055
200 Ga0070684_100000169
201 Ga0070697_100056053
202 Ga0070697_100446925
203 Ga0070697_100503023
204 Ga0070672_100204700
205 Ga0070686_100514235
206 Ga0070693_100110615
207 Ga0070704_100701160
208 Ga0070664_100490884
209 Ga0068857_100037102
210 Ga0070702_100175736
211 Ga0068859_101249308
212 Ga0068861_100027172
213 Ga0068870_10296468
214 Ga0070717_10000022
215 Ga0070717_10434145
216 Ga0070717_10867252
217 Ga0075428_100021761
218 Ga0075431_100005984
219 Ga0075434_100115978
220 Ga0075434_100398590
221 Ga0075429_100114652
222 Ga0075436_100010446
223 Ga0097620_100831963
224 Ga0097620_101249533
225 Ga0075435_100000056
226 Ga0075435_100040482
227 Ga0075435_100053465
228 Ga0105244_10017839
229 Ga0105240_10040218
230 Ga0111539_10000016
231 Ga0105245_10345620
232 Ga0105242_10007081
233 Ga0105238_10000001
234 Ga0105239_10027759
235 Ga0157369_10004088
236 Ga0157369_10268884
237 Ga0157374_10000022
238 Ga0157378_10000034
239 Ga0157378_10489840
240 Ga0157372_10417806
241 Ga0157375_10000054
242 Ga0157375_10000329
243 Ga0163163_10144308
244 Ga0157377_10000009
245 Ga0157377_10000122
246 Ga0157376_10000024
247 Ga0213873_10000001
248 Ga0213876_10000002
249 Ga0213876_10000375
250 Ga0213876_10001257
251 Ga0213876_10022985
252 Ga0213876_10087397
253 Ga0213876_10239707
254 Ga0207684_10161003
255 Ga0207695_10144590
256 Ga0207660_10012494
257 Ga0207662_10005887
258 Ga0207662_10086993
259 Ga0207646_10019005
260 Ga0207646_10036242
261 Ga0207646_10231054
262 Ga0207646_10391703
263 Ga0207694_10000001
264 Ga0207650_10000060
265 Ga0207650_10079969
266 Ga0207659_10000056
267 Ga0207700_10009125
268 Ga0207686_10030749
269 Ga0207670_10074582
270 Ga0207669_10173610
271 Ga0207665_10023751
272 Ga0207665_10433183
273 Ga0207691_10465855
274 Ga0207689_10005968
275 Ga0207689_10355178
276 Ga0207661_10000007
277 Ga0207640_10002045
278 Ga0207677_10000433
279 Ga0207639_10000003
280 Ga0207708_10000012
281 Ga0207674_10018719
282 Ga0207675_100061738
283 Ga0207683_10250901
284 Ga0207428_10000020
285 Ga0307511_10009189
286 Ga0307412_10323692
287 Ga0307416_100239717
288 Ga0373932_0001701
289 Ga0373943_0057478
290 Ga0436365_0190860
291 Ga0436365_0487307
292 Ga0436365_0576559
293 Ga0436365_1065350
294 Ga0436365_1258604
295 Ga0436362_0649416
296 Ga0436362_0924283
297 Ga0451839_0156625
298 Ga0451577_0655232
299 Ga0466960_0299034
300 Ga0451576_0864418
301 Ga0495620_0176275
302 Ga0495679_020838
303 Ga0496106_1085978
304 Ga0501073_0039548
305 nmdc:mga05p37_240229_c1
306 nmdc:mga09592_273900_c1
307 nmdc:mga06r32_4261_c2
308 nmdc:mga08y16_20_c1
309 nmdc:mga0n895_118998_c1
310 nmdc:mga0n895_209165_c1
311 nmdc:mga0n895_411230_c1
312 nmdc:mga0rr50_302221_c1
313 nmdc:mga0rr50_32443_c1
314 nmdc:mga0rr50_40_c1
315 nmdc:mga08x19_3063_c1
316 Ga0495655_0000473

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01330

RuvA_N

RuvA N terminal domain

33

93

0.98

PF07499

RuvA_C

RuvA, C-terminal domain

164

212

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ixs-assembly1.cif.gz_A structure of ruvb complexed with ruva domain iii 0.8931 137 181
2zte-assembly1.cif.gz_A mtruva form iv 0.8072 2 120
2x4j-assembly1.cif.gz_A crystal structure of orf137 from pyrobaculum spherical virus 0.8051 7 29
7pbu-assembly1.cif.gz_F ruvab branch migration motor complexed to the holliday junction - ruva-hj core [t2 dataset] 0.8006 1 119
7x7q-assembly1.cif.gz_G cryoem structure of ruva-ruvb-holliday junction complex 0.7904 1 120
ID Description Score Start End Superfamily
2h5xD03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Ubiquitin-associated (UBA) domain 0.9445 137 185 1.10.8.10
2h5xB03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Ubiquitin-associated (UBA) domain 0.9442 137 185 1.10.8.10
2ztcC03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Ubiquitin-associated (UBA) domain 0.9431 137 185 1.10.8.10
2h5xC03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Ubiquitin-associated (UBA) domain 0.9422 137 185 1.10.8.10
2ztdB03 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3;Ubiquitin-associated (UBA) domain 0.9359 141 185 1.10.8.10
ID Description Score Start End GO Terms
AF-A0A7V0S106-F1-model_v4 Holliday junction branch migration protein RuvA 0.9915 1 94 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
AF-A0A4Q5Y248-F1-model_v4 deleted 0.9855 1 67
AF-A0A3C1PQS7-F1-model_v4 DNA helicase Holliday junction RuvA type domain-containing protein 0.9848 3 64 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A497CTZ0-F1-model_v4 Holliday junction branch migration protein RuvA 0.9837 3 86 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A7V0S106-F1-model_v4 Holliday junction branch migration protein RuvA 0.9811 1 94 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378

Map