F229388

General Info

Members Datasets Scaffolds Average Seq Length
158 106 158 238

Family's Representative Sequence

Representative Sequence 3300006175|Ga0070712_100402418|Ga0070712_1004024181
Length 233
Sequence MKLKDQPLSERPRERLRDKGPESLSNGEMVAILLRTGIKGTNVVEVGKQLVQKYGSLNALARAPWVELAKHPGIGPDKAVTLLAAFTLARRLVAEIHGDAPLLDTPDAVADLLREETRLLNAEVFQILLLNTRRKLIGKPVKISDGTLDTLLVHAREVFQPAIAANAAAIVLAHNHPSGDPTPSEADIKVTRDLIRAGQLLKIEVLDHVILGRKTKERERDYVSLRELGYFYS

Samples

Sample ID Description Type Environment
1 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
2 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
5 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
6 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
21 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
46 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
47 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
48 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
49 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
50 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
51 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
52 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
53 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
54 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
55 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
56 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
57 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
58 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
59 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
60 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
61 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
62 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
63 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
64 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
65 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
66 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
67 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
68 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
69 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
72 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
76 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
77 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
78 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
81 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
82 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
83 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
84 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
85 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
86 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
87 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
88 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
89 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
90 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
91 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
92 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
93 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
94 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
97 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
98 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
99 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
100 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
104 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
105 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
106 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.63
Nodule 0
Rhizoplane 0
Rhizosphere 98.1
Stem 0
Stem Tuber 0
Unclassified 1.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070670_100687829 3300005331 Unclassified 919
2 Ga0068868_100161950 3300005338 Bacteria 1848
3 Ga0070689_100023849 3300005340 Bacteria 4585
4 Ga0070689_100362916 3300005340 Bacteria 1217
5 Ga0070689_100616211 3300005340 Unclassified 941
6 Ga0070675_100107668 3300005354 Unclassified 2354
7 Ga0070688_100256899 3300005365 Bacteria 1246
8 Ga0070701_10009178 3300005438 Bacteria 4323
9 Ga0070711_100272966 3300005439 Bacteria 1335
10 Ga0070694_100013754 3300005444 Bacteria 5059
11 Ga0070685_10185212 3300005466 Bacteria 1343
12 Ga0070679_100062935 3300005530 Bacteria 3698
13 Ga0070684_100171385 3300005535 Bacteria 1971
14 Ga0070684_100406230 3300005535 Bacteria 1256
15 Ga0070686_100005244 3300005544 Bacteria 7158
16 Ga0070704_100009415 3300005549 Bacteria 5899
17 Ga0068855_100490762 3300005563 Bacteria 1336
18 Ga0068856_100360762 3300005614 Bacteria 1472
19 Ga0070702_100181906 3300005615 Bacteria 1376
20 Ga0068859_100277568 3300005617 Bacteria 1768
21 Ga0068863_100006059 3300005841 Bacteria 11866
22 Ga0068863_100185740 3300005841 Bacteria 1997
23 Ga0081455_10042795 3300005937 Bacteria 3968
24 Ga0070712_100402418 3300006175 Bacteria 1131
25 Ga0097621_100049634 3300006237 Bacteria 3410
26 Ga0068871_100046290 3300006358 Bacteria 3503
27 Ga0075431_100199391 3300006847 Bacteria 2048
28 Ga0075436_100051237 3300006914 Bacteria 2849
29 Ga0097620_100277569 3300006931 Bacteria 1768
30 Ga0097620_100289115 3300006931 Bacteria 1732
31 Ga0105240_10008989 3300009093 Bacteria 14200
32 Ga0111539_10040188 3300009094 Bacteria 5632
33 Ga0111539_10098491 3300009094 Bacteria 3434
34 Ga0111539_10259286 3300009094 Bacteria 2024
35 Ga0111539_10369315 3300009094 Bacteria 1670
36 Ga0105245_10032424 3300009098 Bacteria 4625
37 Ga0105242_10037791 3300009176 Unclassified 3880
38 Ga0105242_10197531 3300009176 Bacteria 1785
39 Ga0105249_10199026 3300009553 Bacteria 1960
40 Ga0157374_10515332 3300013296 Unclassified 1201
41 Ga0157375_10039617 3300013308 Bacteria 4537
42 Ga0157376_10571700 3300014969 Bacteria 1121
43 Ga0157376_10573194 3300014969 Unclassified 1120
44 Ga0207695_10022009 3300025913 Bacteria 7255
45 Ga0207695_10149246 3300025913 Unclassified 2278
46 Ga0207693_10317328 3300025915 Bacteria 1220
47 Ga0207662_10068264 3300025918 Bacteria 2147
48 Ga0207686_10098454 3300025934 Unclassified 1947
49 Ga0207670_10002954 3300025936 Bacteria 8981
50 Ga0207670_10321607 3300025936 Bacteria 1217
51 Ga0207704_10157971 3300025938 Bacteria 1609
52 Ga0207711_10092899 3300025941 Bacteria 2656
53 Ga0207677_10188689 3300026023 Bacteria 1628
54 Ga0207702_10334995 3300026078 Unclassified 1444
55 Ga0207641_10010178 3300026088 Bacteria 7734
56 Ga0207641_10423787 3300026088 Bacteria 1282
57 Ga0207674_10019511 3300026116 Bacteria 7342
58 Ga0265337_1000313 3300028556 Bacteria 25839
59 Ga0265337_1002165 3300028556 Bacteria 9226
60 Ga0265337_1025897 3300028556 Bacteria 1781
61 Ga0265326_10002008 3300028558 Bacteria 6959
62 Ga0265319_1000003 3300028563 Bacteria 340561
63 Ga0265336_10004112 3300028666 Bacteria 5541
64 Ga0265338_10000554 3300028800 Bacteria 65376
65 Ga0265338_10001568 3300028800 Bacteria 36872
66 Ga0265338_10003767 3300028800 Bacteria 21069
67 Ga0265338_10011213 3300028800 Bacteria 10385
68 Ga0265338_10015850 3300028800 Bacteria 8250
69 Ga0265338_10035710 3300028800 Bacteria 4769
70 Ga0265338_10092620 3300028800 Bacteria 2492
71 Ga0265338_10144080 3300028800 Bacteria 1861
72 Ga0265338_10339760 3300028800 Bacteria 1082
73 Ga0265324_10001313 3300029957 Bacteria 14604
74 Ga0265320_10013054 3300031240 Bacteria 4795
75 Ga0265320_10141179 3300031240 Bacteria 1091
76 Ga0265325_10003947 3300031241 Bacteria 9487
77 Ga0265325_10085561 3300031241 Unclassified 1562
78 Ga0265340_10059934 3300031247 Unclassified 1825
79 Ga0265340_10098151 3300031247 Bacteria 1363
80 Ga0265340_10132982 3300031247 Bacteria 1140
81 Ga0265339_10040765 3300031249 Bacteria 2580
82 Ga0265331_10131539 3300031250 Bacteria 1141
83 Ga0265327_10015959 3300031251 Bacteria 4808
84 Ga0265316_10010455 3300031344 Bacteria 8454
85 Ga0265316_10014613 3300031344 Bacteria 6900
86 Ga0265316_10060329 3300031344 Bacteria 2948
87 Ga0265316_10068950 3300031344 Bacteria 2730
88 Ga0265313_10001728 3300031595 Bacteria 20106
89 Ga0265314_10001569 3300031711 Bacteria 25123
90 Ga0265314_10280498 3300031711 Bacteria 943
91 Ga0265342_10102990 3300031712 Bacteria 1624
92 Ga0373940_0088670 3300035088 Bacteria 924
93 Ga0373939_0032774 3300035114 Bacteria 1513
94 Ga0373945_0041225 3300035116 Bacteria 1668
95 Ga0373956_0041206 3300035119 Bacteria 2050
96 Ga0373955_0063182 3300035172 Unclassified 2050
97 Ga0373931_0065075 3300035691 Bacteria 1975
98 Ga0373935_0005689 3300035692 Bacteria 7358
99 Ga0373927_0001705 3300035695 Bacteria 16410
100 Ga0373947_0072389 3300035725 Bacteria 2116
101 Ga0373937_0013780 3300036401 Bacteria 7124
102 Ga0373937_0052268 3300036401 Bacteria 3746
103 Ga0373925_0047157 3300037068 Bacteria 3206
104 Ga0451855_1188997 3300041511 Bacteria 900
105 Ga0451855_1701904 3300041511 Bacteria 1792
106 Ga0453684_0025920 3300044712 Bacteria 8490
107 Ga0453684_0411567 3300044712 Bacteria 1512
108 Ga0451576_0046757 3300045051 Unclassified 4556
109 Ga0451576_0069765 3300045051 Unclassified 3658
110 Ga0451576_0095225 3300045051 Bacteria 3097
111 Ga0451576_0412860 3300045051 Bacteria 1416
112 Ga0451576_0421285 3300045051 Bacteria 1401
113 Ga0451576_0523641 3300045051 Bacteria 1246
114 Ga0451576_0600115 3300045051 Bacteria 1157
115 Ga0451576_1322780 3300045051 Bacteria 751
116 Ga0495592_0000006 3300046454 Bacteria 192981
117 Ga0495629_0044566 3300046459 Bacteria 3113
118 Ga0495651_0231390 3300046462 Bacteria 1273
119 Ga0495662_0016393 3300046476 Bacteria 3589
120 Ga0495662_0136891 3300046476 Bacteria 1205
121 Ga0495664_0035400 3300046477 Bacteria 2940
122 Ga0495618_0004638 3300046514 Bacteria 8415
123 Ga0495628_0000138 3300046516 Bacteria 62238
124 Ga0495630_0008199 3300046517 Bacteria 7502
125 Ga0495630_0038265 3300046517 Bacteria 3588
126 Ga0495666_0129463 3300046526 Bacteria 1180
127 Ga0495666_0236016 3300046526 Bacteria 835
128 Ga0495652_0021022 3300046529 Bacteria 5801
129 Ga0495640_0035372 3300046533 Bacteria 3535
130 Ga0495640_0054171 3300046533 Bacteria 2749
131 Ga0495640_0181187 3300046533 Bacteria 1342
132 Ga0495586_0007175 3300046535 Bacteria 5942
133 Ga0495586_0016328 3300046535 Bacteria 3948
134 Ga0495645_0000530 3300046543 Bacteria 26207
135 Ga0495645_0036812 3300046543 Bacteria 3567
136 Ga0495667_0042213 3300046559 Bacteria 3024
137 Ga0495634_0038295 3300046642 Bacteria 3270
138 Ga0495635_0481547 3300046663 Bacteria 818
139 Ga0495657_0077066 3300046675 Bacteria 2164
140 Ga0495599_0014142 3300046678 Bacteria 4939
141 Ga0495646_0034927 3300046680 Bacteria 3120
142 Ga0495658_0047660 3300046683 Bacteria 2414
143 Ga0495658_0093552 3300046683 Bacteria 1784
144 Ga0495613_0011137 3300046689 Bacteria 6678
145 Ga0495613_0128647 3300046689 Bacteria 1814
146 Ga0495613_0545837 3300046689 Bacteria 776
147 Ga0495674_0038398 3300047319 Bacteria 4298
148 Ga0495676_0052049 3300047321 Bacteria 3272
149 Ga0495680_0023159 3300047322 Bacteria 5167
150 Ga0495675_0079297 3300047444 Bacteria 2068
151 Ga0495684_0065912 3300047471 Bacteria 2753
152 Ga0495684_0157652 3300047471 Bacteria 1695
153 Ga0501035_0232630 3300049822 Bacteria 1570
154 Ga0501044_0427385 3300049823 Bacteria 1234
155 nmdc:mga08y16_426159_c1 3300050511 Bacteria 1355
156 nmdc:mga08x19_224175_c1 3300050514 Unclassified 1292
157 Ga0495601_0259925 3300053077 Bacteria 1133
158 Ga0500650_0054810 3300053098 Bacteria 1856

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025915 Ga0207693_10317328 Ga0207693_103173282 197
2 3300041511 Ga0451855_1701904 Ga0451855_1701904_707_1363 217
3 3300041511 Ga0451855_1188997 Ga0451855_1188997_136_825 228
4 3300005340 Ga0070689_100616211 Ga0070689_1006162111 232
5 3300006175 Ga0070712_100402418 Ga0070712_1004024181 232
6 3300009176 Ga0105242_10037791 Ga0105242_100377912 232
7 3300009176 Ga0105242_10197531 Ga0105242_101975312 232
8 3300025934 Ga0207686_10098454 Ga0207686_100984542 232
9 3300028800 Ga0265338_10000554 Ga0265338_1000055420 232
10 3300031247 Ga0265340_10059934 Ga0265340_100599342 232
11 3300035691 Ga0373931_0065075 Ga0373931_0065075_1182_1883 232
12 3300045051 Ga0451576_0412860 Ga0451576_0412860_455_1156 232
13 3300046517 Ga0495630_0038265 Ga0495630_0038265_11_709 232
14 3300046526 Ga0495666_0129463 Ga0495666_0129463_339_1040 232
15 3300046533 Ga0495640_0054171 Ga0495640_0054171_1544_2242 232
16 3300046689 Ga0495613_0128647 Ga0495613_0128647_82_783 232
17 3300013296 Ga0157374_10515332 Ga0157374_105153322 233
18 3300005340 Ga0070689_100023849 Ga0070689_1000238493 234
19 3300005365 Ga0070688_100256899 Ga0070688_1002568992 234
20 3300005438 Ga0070701_10009178 Ga0070701_100091782 234
21 3300005444 Ga0070694_100013754 Ga0070694_1000137542 234
22 3300005466 Ga0070685_10185212 Ga0070685_101852122 234
23 3300005544 Ga0070686_100005244 Ga0070686_1000052443 234
24 3300005549 Ga0070704_100009415 Ga0070704_1000094154 234
25 3300005617 Ga0068859_100277568 Ga0068859_1002775682 234
26 3300005841 Ga0068863_100006059 Ga0068863_1000060594 234
27 3300005841 Ga0068863_100185740 Ga0068863_1001857402 234
28 3300006931 Ga0097620_100277569 Ga0097620_1002775692 234
29 3300009093 Ga0105240_10008989 Ga0105240_100089898 234
30 3300009094 Ga0111539_10098491 Ga0111539_100984912 234
31 3300014969 Ga0157376_10573194 Ga0157376_105731941 234
32 3300025913 Ga0207695_10022009 Ga0207695_100220096 234
33 3300025936 Ga0207670_10002954 Ga0207670_100029546 234
34 3300026088 Ga0207641_10010178 Ga0207641_100101782 234
35 3300026088 Ga0207641_10423787 Ga0207641_104237871 234
36 3300045051 Ga0451576_0069765 Ga0451576_0069765_2919_3647 234
37 3300046663 Ga0495635_0481547 Ga0495635_0481547_36_743 234
38 3300049822 Ga0501035_0232630 Ga0501035_0232630_813_1520 234
39 3300005331 Ga0070670_100687829 Ga0070670_1006878291 235
40 3300005338 Ga0068868_100161950 Ga0068868_1001619502 235
41 3300005340 Ga0070689_100362916 Ga0070689_1003629161 235
42 3300005354 Ga0070675_100107668 Ga0070675_1001076684 235
43 3300005439 Ga0070711_100272966 Ga0070711_1002729661 235
44 3300005530 Ga0070679_100062935 Ga0070679_1000629353 235
45 3300005535 Ga0070684_100171385 Ga0070684_1001713852 235
46 3300005535 Ga0070684_100406230 Ga0070684_1004062302 235
47 3300005563 Ga0068855_100490762 Ga0068855_1004907621 235
48 3300005614 Ga0068856_100360762 Ga0068856_1003607622 235
49 3300005615 Ga0070702_100181906 Ga0070702_1001819062 235
50 3300005937 Ga0081455_10042795 Ga0081455_100427953 235
51 3300006237 Ga0097621_100049634 Ga0097621_1000496343 235
52 3300006358 Ga0068871_100046290 Ga0068871_1000462903 235
53 3300006847 Ga0075431_100199391 Ga0075431_1001993912 235
54 3300006914 Ga0075436_100051237 Ga0075436_1000512373 235
55 3300006931 Ga0097620_100289115 Ga0097620_1002891152 235
56 3300009094 Ga0111539_10040188 Ga0111539_100401882 235
57 3300009094 Ga0111539_10259286 Ga0111539_102592863 235
58 3300009094 Ga0111539_10369315 Ga0111539_103693152 235
59 3300009098 Ga0105245_10032424 Ga0105245_100324241 235
60 3300009553 Ga0105249_10199026 Ga0105249_101990262 235
61 3300013308 Ga0157375_10039617 Ga0157375_100396172 235
62 3300014969 Ga0157376_10571700 Ga0157376_105717002 235
63 3300025913 Ga0207695_10149246 Ga0207695_101492461 235
64 3300025918 Ga0207662_10068264 Ga0207662_100682642 235
65 3300025936 Ga0207670_10321607 Ga0207670_103216072 235
66 3300025938 Ga0207704_10157971 Ga0207704_101579712 235
67 3300025941 Ga0207711_10092899 Ga0207711_100928992 235
68 3300026023 Ga0207677_10188689 Ga0207677_101886893 235
69 3300026078 Ga0207702_10334995 Ga0207702_103349952 235
70 3300026116 Ga0207674_10019511 Ga0207674_100195112 235
71 3300028556 Ga0265337_1000313 Ga0265337_10003139 235
72 3300028556 Ga0265337_1002165 Ga0265337_10021655 235
73 3300028556 Ga0265337_1025897 Ga0265337_10258973 235
74 3300028558 Ga0265326_10002008 Ga0265326_100020086 235
75 3300028563 Ga0265319_1000003 Ga0265319_1000003115 235
76 3300028666 Ga0265336_10004112 Ga0265336_100041124 235
77 3300028800 Ga0265338_10001568 Ga0265338_100015682 235
78 3300028800 Ga0265338_10003767 Ga0265338_100037672 235
79 3300028800 Ga0265338_10011213 Ga0265338_100112132 235
80 3300028800 Ga0265338_10015850 Ga0265338_100158504 235
81 3300028800 Ga0265338_10035710 Ga0265338_100357103 235
82 3300028800 Ga0265338_10092620 Ga0265338_100926202 235
83 3300028800 Ga0265338_10144080 Ga0265338_101440802 235
84 3300028800 Ga0265338_10339760 Ga0265338_103397602 235
85 3300029957 Ga0265324_10001313 Ga0265324_1000131310 235
86 3300031240 Ga0265320_10013054 Ga0265320_100130542 235
87 3300031240 Ga0265320_10141179 Ga0265320_101411792 235
88 3300031241 Ga0265325_10003947 Ga0265325_100039476 235
89 3300031241 Ga0265325_10085561 Ga0265325_100855611 235
90 3300031247 Ga0265340_10098151 Ga0265340_100981512 235
91 3300031247 Ga0265340_10132982 Ga0265340_101329822 235
92 3300031249 Ga0265339_10040765 Ga0265339_100407653 235
93 3300031250 Ga0265331_10131539 Ga0265331_101315391 235
94 3300031251 Ga0265327_10015959 Ga0265327_100159597 235
95 3300031344 Ga0265316_10010455 Ga0265316_100104552 235
96 3300031344 Ga0265316_10014613 Ga0265316_100146134 235
97 3300031344 Ga0265316_10060329 Ga0265316_100603293 235
98 3300031344 Ga0265316_10068950 Ga0265316_100689502 235
99 3300031595 Ga0265313_10001728 Ga0265313_1000172810 235
100 3300031711 Ga0265314_10001569 Ga0265314_1000156915 235
101 3300031711 Ga0265314_10280498 Ga0265314_102804981 235
102 3300031712 Ga0265342_10102990 Ga0265342_101029902 235
103 3300035088 Ga0373940_0088670 Ga0373940_0088670_22_732 235
104 3300035114 Ga0373939_0032774 Ga0373939_0032774_362_1072 235
105 3300035116 Ga0373945_0041225 Ga0373945_0041225_526_1350 235
106 3300035119 Ga0373956_0041206 Ga0373956_0041206_80_790 235
107 3300035172 Ga0373955_0063182 Ga0373955_0063182_238_948 235
108 3300035692 Ga0373935_0005689 Ga0373935_0005689_977_1801 235
109 3300035695 Ga0373927_0001705 Ga0373927_0001705_6383_7207 235
110 3300035725 Ga0373947_0072389 Ga0373947_0072389_966_1790 235
111 3300036401 Ga0373937_0013780 Ga0373937_0013780_439_1149 235
112 3300036401 Ga0373937_0052268 Ga0373937_0052268_1496_2206 235
113 3300037068 Ga0373925_0047157 Ga0373925_0047157_1654_2478 235
114 3300044712 Ga0453684_0025920 Ga0453684_0025920_5527_6234 235
115 3300044712 Ga0453684_0411567 Ga0453684_0411567_495_1205 235
116 3300045051 Ga0451576_0046757 Ga0451576_0046757_2523_3233 235
117 3300045051 Ga0451576_0095225 Ga0451576_0095225_857_1567 235
118 3300045051 Ga0451576_0421285 Ga0451576_0421285_143_961 235
119 3300045051 Ga0451576_0523641 Ga0451576_0523641_478_1188 235
120 3300045051 Ga0451576_0600115 Ga0451576_0600115_217_927 235
121 3300045051 Ga0451576_1322780 Ga0451576_1322780_27_737 235
122 3300046454 Ga0495592_0000006 Ga0495592_0000006_92546_93256 235
123 3300046459 Ga0495629_0044566 Ga0495629_0044566_1222_1932 235
124 3300046462 Ga0495651_0231390 Ga0495651_0231390_440_1150 235
125 3300046476 Ga0495662_0016393 Ga0495662_0016393_1785_2495 235
126 3300046476 Ga0495662_0136891 Ga0495662_0136891_405_1115 235
127 3300046477 Ga0495664_0035400 Ga0495664_0035400_1615_2325 235
128 3300046514 Ga0495618_0004638 Ga0495618_0004638_1426_2136 235
129 3300046516 Ga0495628_0000138 Ga0495628_0000138_24860_25570 235
130 3300046517 Ga0495630_0008199 Ga0495630_0008199_1535_2245 235
131 3300046526 Ga0495666_0236016 Ga0495666_0236016_34_744 235
132 3300046529 Ga0495652_0021022 Ga0495652_0021022_1333_2043 235
133 3300046533 Ga0495640_0035372 Ga0495640_0035372_1447_2157 235
134 3300046533 Ga0495640_0181187 Ga0495640_0181187_50_760 235
135 3300046535 Ga0495586_0007175 Ga0495586_0007175_3759_4469 235
136 3300046535 Ga0495586_0016328 Ga0495586_0016328_1176_1886 235
137 3300046543 Ga0495645_0000530 Ga0495645_0000530_7874_8584 235
138 3300046543 Ga0495645_0036812 Ga0495645_0036812_863_1570 235
139 3300046559 Ga0495667_0042213 Ga0495667_0042213_1685_2395 235
140 3300046642 Ga0495634_0038295 Ga0495634_0038295_918_1628 235
141 3300046675 Ga0495657_0077066 Ga0495657_0077066_1109_1819 235
142 3300046678 Ga0495599_0014142 Ga0495599_0014142_2628_3338 235
143 3300046680 Ga0495646_0034927 Ga0495646_0034927_1984_2694 235
144 3300046683 Ga0495658_0047660 Ga0495658_0047660_1501_2211 235
145 3300046683 Ga0495658_0093552 Ga0495658_0093552_454_1164 235
146 3300046689 Ga0495613_0011137 Ga0495613_0011137_2922_3632 235
147 3300046689 Ga0495613_0545837 Ga0495613_0545837_55_762 235
148 3300047319 Ga0495674_0038398 Ga0495674_0038398_241_951 235
149 3300047321 Ga0495676_0052049 Ga0495676_0052049_1068_1892 235
150 3300047322 Ga0495680_0023159 Ga0495680_0023159_3458_4168 235
151 3300047444 Ga0495675_0079297 Ga0495675_0079297_509_1219 235
152 3300047471 Ga0495684_0065912 Ga0495684_0065912_1874_2581 235
153 3300047471 Ga0495684_0157652 Ga0495684_0157652_245_955 235
154 3300049823 Ga0501044_0427385 Ga0501044_0427385_242_952 235
155 3300050511 nmdc:mga08y16_426159_c1 nmdc:mga08y16_426159_c1_91_801 235
156 3300050514 nmdc:mga08x19_224175_c1 nmdc:mga08x19_224175_c1_36_767 235
157 3300053077 Ga0495601_0259925 Ga0495601_0259925_80_787 235
158 3300053098 Ga0500650_0054810 Ga0500650_0054810_958_1668 235

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20582

UPF0758_N

UPF0758 N-terminal

3

80

0.96

PF04002

RadC

RadC-like JAB domain

103

230

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qlc-assembly5.cif.gz_E the crystal structure of dna repair protein radc from chlorobium tepidum tls 0.9445 104 233
2qlc-assembly5.cif.gz_E the crystal structure of dna repair protein radc from chlorobium tepidum tls 0.9373 104 233
3c1y-assembly1.cif.gz_A structure of bacterial dna damage sensor protein with co-purified and co-crystallized ligand 0.8451 31 95
4yxm-assembly1.cif.gz_A structure of thermotoga maritima disa d75n mutant with reaction product c-di-amp 0.8289 32 95
1b0x-assembly1.cif.gz_A-2 the crystal structure of an eph receptor sam domain reveals a mechanism for modular dimerization. 0.7729 46 99
ID Description Score Start End Superfamily
af_P31337_89_213_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9633 102 232 3.40.140.10
af_P31337_89_213_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9558 102 232 3.40.140.10
2qlcA00 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9461 106 233 3.40.140.10
af_Q47685_35_158_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9274 104 233 3.40.140.10
af_P25531_100_221_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9233 104 231 3.40.140.10
ID Description Score Start End GO Terms
AF-A0A3C0VZV9-F1-model_v4 MPN domain-containing protein 0.9832 86 235 GO:0006508
GO:0008237
GO:0046872
AF-A0A3C0VZV9-F1-model_v4 MPN domain-containing protein 0.9768 86 235 GO:0006508
GO:0008237
GO:0046872
AF-A0A822JJ38-F1-model_v4 MPN domain-containing protein 0.9716 102 233 GO:0006508
GO:0008237
GO:0046872
AF-A0A1F8QX00-F1-model_v4 MPN domain-containing protein 0.9653 104 213 GO:0006508
GO:0008237
GO:0046872
AF-A0A0V8JGN3-F1-model_v4 DNA repair protein RadC 0.9646 102 233 GO:0006508
GO:0008237
GO:0046872

Feature Viewer

pLDDT pTM Quality
89.13 0.58 Medium
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Predicted Structure (AlphaFold2)

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