F229306

General Info

Members Datasets Scaffolds Average Seq Length
158 112 158 346

Family's Representative Sequence

Representative Sequence 3300005844|Ga0068862_100047272|Ga0068862_1000472723
Length 395
Sequence VVPKERLGRSLPRLALAALALFDGEHTIHRMHVSDVAIVGAGPIGIELAVALKRAGVDFIHFDARQIAHTISWFAPQTRFFSSNERIAIAGVPLNTADQSKATREDYLAYLRGVITQFDLKINTFEPIIGIERNDHNFTLTSQPPGASRRSHRAKRVVLCTGGTDRPRRLNIPGEDLPHVDHYFKDPHQYFGKRLLIVGGKNSAVETAIRCHNAGAIVSMSYRRDAFPEKSIKYWLMPEIKSLCKTGCIRAYFDSRPTAITPTHVTLEVQRRSVESERVTESESPFHAVTLHPVTFVDIPADFVLALIGFEQDKTLLKLAGVELRGPQKAPVFDENTMETNIPGVYVAGTAVGGTQDKFTVFIENCHVHVDRIVTAITGAHAMDVSQPVYAEPES

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
69 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
71 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
72 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
73 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
76 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
77 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
78 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
79 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
80 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
81 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
82 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
84 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
85 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
86 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
87 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
93 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
94 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
95 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
96 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
97 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
98 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
99 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
100 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
101 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
102 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
111 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.73
Metatranscriptomes 1.27
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 95.57
Stem 0
Stem Tuber 0
Unclassified 4.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10091528 3300003323 Bacteria 5654
2 Ga0070683_100000103 3300005329 Bacteria 55332
3 Ga0070683_100199862 3300005329 Bacteria 1898
4 Ga0070670_100000283 3300005331 Bacteria 44752
5 Ga0070680_100051262 3300005336 Bacteria 3367
6 Ga0070682_100000024 3300005337 Bacteria 199229
7 Ga0070682_100025518 3300005337 Bacteria 3528
8 Ga0068868_100000517 3300005338 Bacteria 25829
9 Ga0068868_100001308 3300005338 Bacteria 17160
10 Ga0070689_100006785 3300005340 Bacteria 7964
11 Ga0070692_10053971 3300005345 Bacteria 2097
12 Ga0070675_100000006 3300005354 Bacteria 280013
13 Ga0070701_10000882 3300005438 Bacteria 10805
14 Ga0070700_100000151 3300005441 Bacteria 40597
15 Ga0070708_100010714 3300005445 Bacteria 7441
16 Ga0070699_100289631 3300005518 Bacteria 1468
17 Ga0070684_100000272 3300005535 Bacteria 35847
18 Ga0068853_100007977 3300005539 Bacteria 8490
19 Ga0070672_100000366 3300005543 Bacteria 26021
20 Ga0070686_100087414 3300005544 Bacteria 2078
21 Ga0070665_100165979 3300005548 Bacteria 2210
22 Ga0068854_100006934 3300005578 Bacteria 7226
23 Ga0070702_100136406 3300005615 Bacteria 1557
24 Ga0068864_100000034 3300005618 Bacteria 199411
25 Ga0068861_100153314 3300005719 Bacteria 1893
26 Ga0068858_100000245 3300005842 Bacteria 58452
27 Ga0068858_100115064 3300005842 Unclassified 2513
28 Ga0068862_100047272 3300005844 Bacteria 3672
29 Ga0081539_10009980 3300005985 Bacteria 7824
30 Ga0075428_100058045 3300006844 Bacteria 4237
31 Ga0075430_100012538 3300006846 Bacteria 7215
32 Ga0075431_100010644 3300006847 Bacteria 9245
33 Ga0075434_100464632 3300006871 Bacteria 1287
34 Ga0075435_100017239 3300007076 Bacteria 5461
35 Ga0105240_10006837 3300009093 Bacteria 16680
36 Ga0111539_10033528 3300009094 Bacteria 6234
37 Ga0111539_10228743 3300009094 Bacteria 2166
38 Ga0105245_10000013 3300009098 Bacteria 266248
39 Ga0105245_10001877 3300009098 Bacteria 19067
40 Ga0105238_10000001 3300009551 Bacteria 2036163
41 Ga0105239_10675304 3300010375 Bacteria 1180
42 Ga0157369_10000189 3300013105 Bacteria 85144
43 Ga0157369_10046185 3300013105 Bacteria 4734
44 Ga0157374_10000010 3300013296 Bacteria 505635
45 Ga0157374_10088815 3300013296 Bacteria 2944
46 Ga0157378_10043065 3300013297 Bacteria 4008
47 Ga0163162_10022534 3300013306 Bacteria 6207
48 Ga0157372_10422491 3300013307 Bacteria 1553
49 Ga0157375_10000002 3300013308 Bacteria 495826
50 Ga0157375_10001801 3300013308 Bacteria 18369
51 Ga0157380_10021977 3300014326 Unclassified 4792
52 Ga0157377_10000015 3300014745 Bacteria 190735
53 Ga0157376_10000019 3300014969 Bacteria 255553
54 Ga0213873_10000003 3300021358 Bacteria 973849
55 Ga0213873_10013799 3300021358 Bacteria 1778
56 Ga0213876_10000003 3300021384 Bacteria 973849
57 Ga0213876_10000014 3300021384 Bacteria 310412
58 Ga0213876_10019360 3300021384 Bacteria 3596
59 Ga0207695_10000112 3300025913 Bacteria 248037
60 Ga0207695_10081379 3300025913 Bacteria 3277
61 Ga0207660_10026212 3300025917 Bacteria 3968
62 Ga0207646_10209027 3300025922 Bacteria 1762
63 Ga0207694_10000001 3300025924 Bacteria 4078485
64 Ga0207650_10000166 3300025925 Bacteria 79838
65 Ga0207659_10000008 3300025926 Bacteria 321286
66 Ga0207687_10000014 3300025927 Bacteria 297704
67 Ga0207687_10002608 3300025927 Bacteria 12232
68 Ga0207687_10004619 3300025927 Bacteria 9160
69 Ga0207686_10007674 3300025934 Bacteria 5816
70 Ga0207670_10002168 3300025936 Bacteria 10270
71 Ga0207704_10106449 3300025938 Bacteria 1884
72 Ga0207691_10004161 3300025940 Bacteria 14057
73 Ga0207661_10000007 3300025944 Bacteria 471636
74 Ga0207661_10116090 3300025944 Bacteria 2272
75 Ga0207640_10048582 3300025981 Bacteria 2744
76 Ga0207677_10000005 3300026023 Bacteria 287656
77 Ga0207677_10000238 3300026023 Bacteria 42939
78 Ga0207677_10383430 3300026023 Unclassified 1187
79 Ga0207703_10000155 3300026035 Bacteria 79031
80 Ga0207703_10064106 3300026035 Bacteria 3015
81 Ga0207639_10000007 3300026041 Bacteria 451321
82 Ga0207678_10208549 3300026067 Unclassified 1671
83 Ga0207708_10000270 3300026075 Bacteria 40563
84 Ga0207648_10337443 3300026089 Bacteria 1357
85 Ga0207676_10000020 3300026095 Bacteria 301541
86 Ga0207675_100229704 3300026118 Bacteria 1790
87 Ga0207428_10038684 3300027907 Bacteria 3876
88 Ga0268265_10117274 3300028380 Unclassified 2186
89 Ga0316579_10000095 3300031691 Bacteria 23137
90 Ga0316579_10024835 3300031691 Bacteria 2700
91 Ga0316579_10030318 3300031691 Bacteria 2471
92 Ga0316576_10000086 3300031727 Bacteria 32448
93 Ga0316576_10020445 3300031727 Bacteria 4558
94 Ga0316578_10003147 3300031728 Bacteria 7460
95 Ga0316578_10008511 3300031728 Bacteria 5226
96 Ga0316578_10089191 3300031728 Unclassified 1840
97 Ga0316578_10168990 3300031728 Bacteria 1318
98 Ga0316577_10001002 3300031733 Bacteria 12653
99 Ga0316577_10002810 3300031733 Bacteria 8687
100 Ga0316577_10011216 3300031733 Bacteria 4854
101 Ga0316577_10041565 3300031733 Bacteria 2572
102 Ga0307410_10023674 3300031852 Bacteria 3823
103 Ga0307407_10102603 3300031903 Unclassified 1779
104 Ga0307409_100186922 3300031995 Unclassified 1840
105 Ga0307411_10116574 3300032005 Unclassified 1923
106 Ga0307415_100091187 3300032126 Bacteria 2207
107 Ga0316583_10000040 3300032133 Bacteria 25103
108 Ga0316583_10017308 3300032133 Bacteria 2593
109 Ga0316585_10000403 3300032137 Bacteria 9994
110 Ga0316580_10000309 3300032139 Bacteria 10658
111 Ga0316593_10029808 3300032168 Bacteria 1767
112 Ga0316596_1004878 3300033541 Bacteria 3032
113 Ga0316574_0003092 3300035398 Bacteria 8496
114 Ga0316574_0084661 3300035398 Unclassified 2017
115 Ga0316574_0116870 3300035398 Unclassified 1711
116 Ga0373937_0042480 3300036401 Bacteria 4148
117 Ga0316582_0000675 3300036647 Bacteria 13403
118 Ga0316582_0019630 3300036647 Bacteria 3961
119 Ga0316584_0000065 3300036712 Bacteria 41449
120 Ga0316584_0006528 3300036712 Bacteria 7901
121 Ga0316584_0036063 3300036712 Bacteria 3670
122 Ga0316584_0091116 3300036712 Bacteria 2282
123 Ga0395898_0231582 3300037466 Bacteria 1762
124 Ga0316581_0001908 3300037588 Bacteria 4870
125 Ga0316581_0014069 3300037588 Bacteria 2274
126 Ga0316581_0048425 3300037588 Bacteria 1301
127 Ga0395901_0259562 3300038443 Bacteria 1809
128 Ga0436365_0013393 3300039437 Bacteria 46110
129 Ga0436365_1171278 3300039437 Bacteria 105378
130 Ga0436365_1624267 3300039437 Bacteria 4371
131 Ga0436362_0263779 3300039453 Bacteria 319094
132 Ga0436362_0711124 3300039453 Bacteria 15359
133 Ga0466972_0065791 3300044658 Bacteria 1733
134 Ga0466965_0000955 3300044683 Bacteria 11152
135 Ga0466968_0002692 3300044735 Bacteria 6549
136 Ga0466960_0007998 3300044901 Bacteria 4316
137 Ga0495618_0031520 3300046514 Bacteria 3317
138 Ga0495620_0014695 3300046515 Bacteria 3971
139 Ga0495635_0034402 3300046663 Bacteria 3514
140 Ga0495613_0009817 3300046689 Bacteria 7118
141 Ga0495674_0054998 3300047319 Unclassified 3492
142 Ga0495684_0016983 3300047471 Bacteria 5607
143 Ga0495684_0220198 3300047471 Bacteria 1392
144 Ga0501034_0007882 3300049571 Bacteria 11321
145 Ga0501034_0033535 3300049571 Bacteria 5208
146 Ga0501037_0036999 3300049573 Bacteria 3597
147 Ga0501070_0192265 3300049586 Unclassified 1677
148 Ga0501083_0006170 3300049744 Bacteria 8502
149 Ga0501044_0011067 3300049823 Bacteria 9785
150 Ga0501044_0011689 3300049823 Bacteria 9510
151 nmdc:mga06r32_1687_c1 3300050510 Bacteria 19892
152 nmdc:mga06r32_40506_c1 3300050510 Bacteria 4423
153 nmdc:mga08y16_3009_c1 3300050511 Bacteria 17386
154 nmdc:mga08y16_75705_c1 3300050511 Bacteria 3508
155 nmdc:mga0n895_176286_c1 3300050512 Unclassified 2168
156 nmdc:mga0n895_195832_c1 3300050512 Bacteria 2052
157 nmdc:mga0rr50_22194_c1 3300050513 Bacteria 4352
158 Ga0501082_0142247 3300060353 Bacteria 2082

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300005441 Ga0070700_100000151 Ga0070700_10000015112 313
2 3300026075 Ga0207708_10000270 Ga0207708_1000027026 313
3 3300005354 Ga0070675_100000006 Ga0070675_100000006150 314
4 3300025926 Ga0207659_10000008 Ga0207659_10000008179 314
5 3300005336 Ga0070680_100051262 Ga0070680_1000512625 319
6 3300005719 Ga0068861_100153314 Ga0068861_1001533142 319
7 3300006871 Ga0075434_100464632 Ga0075434_1004646322 319
8 3300014326 Ga0157380_10021977 Ga0157380_100219776 319
9 3300025917 Ga0207660_10026212 Ga0207660_100262124 319
10 3300026118 Ga0207675_100229704 Ga0207675_1002297042 319
11 3300050512 nmdc:mga0n895_195832_c1 nmdc:mga0n895_195832_c1_77_1042 319
12 3300025934 Ga0207686_10007674 Ga0207686_100076745 322
13 3300005543 Ga0070672_100000366 Ga0070672_1000003666 323
14 3300005618 Ga0068864_100000034 Ga0068864_10000003444 323
15 3300013308 Ga0157375_10000002 Ga0157375_10000002309 323
16 3300025938 Ga0207704_10106449 Ga0207704_101064492 323
17 3300025940 Ga0207691_10004161 Ga0207691_1000416112 323
18 3300026095 Ga0207676_10000020 Ga0207676_10000020135 323
19 3300046515 Ga0495620_0014695 Ga0495620_0014695_541_1515 323
20 3300021358 Ga0213873_10000003 Ga0213873_10000003842 326
21 3300021384 Ga0213876_10000003 Ga0213876_1000000327 326
22 3300039437 Ga0436365_1171278 Ga0436365_1171278_78698_79684 326
23 3300039453 Ga0436362_0263779 Ga0436362_0263779_25695_26681 326
24 3300005338 Ga0068868_100000517 Ga0068868_1000005171 328
25 3300026023 Ga0207677_10000005 Ga0207677_1000000574 328
26 3300005329 Ga0070683_100199862 Ga0070683_1001998623 329
27 3300013297 Ga0157378_10043065 Ga0157378_100430652 329
28 3300025944 Ga0207661_10116090 Ga0207661_101160903 329
29 3300050512 nmdc:mga0n895_176286_c1 nmdc:mga0n895_176286_c1_957_1949 329
30 3300005438 Ga0070701_10000882 Ga0070701_100008825 330
31 3300005539 Ga0068853_100007977 Ga0068853_1000079776 330
32 3300005615 Ga0070702_100136406 Ga0070702_1001364062 330
33 3300009093 Ga0105240_10006837 Ga0105240_100068372 330
34 3300025913 Ga0207695_10081379 Ga0207695_100813792 330
35 3300026041 Ga0207639_10000007 Ga0207639_10000007187 330
36 3300005337 Ga0070682_100000024 Ga0070682_10000002451 331
37 3300007076 Ga0075435_100017239 Ga0075435_1000172393 331
38 3300010375 Ga0105239_10675304 Ga0105239_106753042 331
39 3300050510 nmdc:mga06r32_1687_c1 nmdc:mga06r32_1687_c1_14753_15760 331
40 3300050513 nmdc:mga0rr50_22194_c1 nmdc:mga0rr50_22194_c1_976_1977 331
41 3300005518 Ga0070699_100289631 Ga0070699_1002896312 332
42 3300009098 Ga0105245_10001877 Ga0105245_100018774 332
43 3300013306 Ga0163162_10022534 Ga0163162_100225343 332
44 3300025927 Ga0207687_10004619 Ga0207687_100046194 332
45 3300026089 Ga0207648_10337443 Ga0207648_103374431 332
46 3300005331 Ga0070670_100000283 Ga0070670_10000028341 335
47 3300005337 Ga0070682_100025518 Ga0070682_1000255184 335
48 3300005578 Ga0068854_100006934 Ga0068854_1000069343 335
49 3300009098 Ga0105245_10000013 Ga0105245_1000001344 335
50 3300013105 Ga0157369_10000189 Ga0157369_1000018968 335
51 3300013296 Ga0157374_10000010 Ga0157374_100000107 335
52 3300014745 Ga0157377_10000015 Ga0157377_1000001514 335
53 3300014969 Ga0157376_10000019 Ga0157376_10000019194 335
54 3300025925 Ga0207650_10000166 Ga0207650_1000016680 335
55 3300025927 Ga0207687_10000014 Ga0207687_1000001444 335
56 3300025981 Ga0207640_10048582 Ga0207640_100485823 335
57 3300009094 Ga0111539_10228743 Ga0111539_102287433 336
58 3300013308 Ga0157375_10001801 Ga0157375_100018014 336
59 3300050511 nmdc:mga08y16_75705_c1 nmdc:mga08y16_75705_c1_2119_3150 336
60 3300026023 Ga0207677_10383430 Ga0207677_103834302 337
61 3300005345 Ga0070692_10053971 Ga0070692_100539712 338
62 3300009551 Ga0105238_10000001 Ga0105238_1000000111 338
63 3300021358 Ga0213873_10013799 Ga0213873_100137992 338
64 3300021384 Ga0213876_10000014 Ga0213876_1000001477 338
65 3300025924 Ga0207694_10000001 Ga0207694_100000011057 338
66 3300039437 Ga0436365_0013393 Ga0436365_0013393_13364_14386 338
67 3300039453 Ga0436362_0711124 Ga0436362_0711124_5601_6623 338
68 3300005338 Ga0068868_100001308 Ga0068868_1000013082 339
69 3300026023 Ga0207677_10000238 Ga0207677_1000023828 339
70 3300049571 Ga0501034_0033535 Ga0501034_0033535_1100_2134 339
71 3300049573 Ga0501037_0036999 Ga0501037_0036999_363_1397 339
72 3300049586 Ga0501070_0192265 Ga0501070_0192265_268_1302 339
73 3300049823 Ga0501044_0011067 Ga0501044_0011067_7914_8948 339
74 3300060353 Ga0501082_0142247 Ga0501082_0142247_663_1697 339
75 3300031852 Ga0307410_10023674 Ga0307410_100236741 340
76 3300031903 Ga0307407_10102603 Ga0307407_101026031 340
77 3300031995 Ga0307409_100186922 Ga0307409_1001869223 340
78 3300032005 Ga0307411_10116574 Ga0307411_101165742 340
79 3300036401 Ga0373937_0042480 Ga0373937_0042480_1825_2853 342
80 3300046514 Ga0495618_0031520 Ga0495618_0031520_1159_2187 342
81 3300046663 Ga0495635_0034402 Ga0495635_0034402_2084_3112 342
82 3300046689 Ga0495613_0009817 Ga0495613_0009817_4131_5159 342
83 3300047471 Ga0495684_0016983 Ga0495684_0016983_3851_4879 342
84 3300005329 Ga0070683_100000103 Ga0070683_10000010328 343
85 3300005535 Ga0070684_100000272 Ga0070684_10000027221 343
86 3300005548 Ga0070665_100165979 Ga0070665_1001659792 343
87 3300013105 Ga0157369_10046185 Ga0157369_100461852 343
88 3300025944 Ga0207661_10000007 Ga0207661_10000007109 343
89 3300005340 Ga0070689_100006785 Ga0070689_1000067854 344
90 3300005842 Ga0068858_100000245 Ga0068858_10000024516 344
91 3300005842 Ga0068858_100115064 Ga0068858_1001150642 344
92 3300005985 Ga0081539_10009980 Ga0081539_100099807 344
93 3300021384 Ga0213876_10019360 Ga0213876_100193602 344
94 3300025927 Ga0207687_10002608 Ga0207687_1000260811 344
95 3300025936 Ga0207670_10002168 Ga0207670_100021684 344
96 3300026035 Ga0207703_10000155 Ga0207703_1000015537 344
97 3300026035 Ga0207703_10064106 Ga0207703_100641066 344
98 3300039437 Ga0436365_1624267 Ga0436365_1624267_2194_3240 344
99 3300005445 Ga0070708_100010714 Ga0070708_1000107145 345
100 3300013307 Ga0157372_10422491 Ga0157372_104224912 345
101 3300025913 Ga0207695_10000112 Ga0207695_10000112123 345
102 3300025922 Ga0207646_10209027 Ga0207646_102090272 345
103 3300037466 Ga0395898_0231582 Ga0395898_0231582_45_1088 346
104 3300038443 Ga0395901_0259562 Ga0395901_0259562_383_1426 346
105 3300049571 Ga0501034_0007882 Ga0501034_0007882_9741_10787 347
106 3300049744 Ga0501083_0006170 Ga0501083_0006170_4355_5401 347
107 3300049823 Ga0501044_0011689 Ga0501044_0011689_1278_2324 347
108 3300032126 Ga0307415_100091187 Ga0307415_1000911871 349
109 3300009094 Ga0111539_10033528 Ga0111539_100335285 350
110 3300050511 nmdc:mga08y16_3009_c1 nmdc:mga08y16_3009_c1_14378_15430 350
111 3300047319 Ga0495674_0054998 Ga0495674_0054998_2007_3065 352
112 3300047471 Ga0495684_0220198 Ga0495684_0220198_181_1239 352
113 3300006844 Ga0075428_100058045 Ga0075428_1000580453 354
114 3300027907 Ga0207428_10038684 Ga0207428_100386843 354
115 3300031727 Ga0316576_10020445 Ga0316576_100204454 354
116 3300031728 Ga0316578_10168990 Ga0316578_101689901 354
117 3300031733 Ga0316577_10002810 Ga0316577_100028102 354
118 3300036712 Ga0316584_0006528 Ga0316584_0006528_32_1099 354
119 3300006846 Ga0075430_100012538 Ga0075430_1000125382 355
120 3300006847 Ga0075431_100010644 Ga0075431_1000106447 355
121 3300050510 nmdc:mga06r32_40506_c1 nmdc:mga06r32_40506_c1_734_1840 355
122 3300005544 Ga0070686_100087414 Ga0070686_1000874142 359
123 3300026067 Ga0207678_10208549 Ga0207678_102085492 359
124 3300013296 Ga0157374_10088815 Ga0157374_100888153 360
125 3300031691 Ga0316579_10000095 Ga0316579_1000009516 360
126 3300031691 Ga0316579_10024835 Ga0316579_100248353 360
127 3300031727 Ga0316576_10000086 Ga0316576_1000008616 360
128 3300031728 Ga0316578_10003147 Ga0316578_100031473 360
129 3300031728 Ga0316578_10008511 Ga0316578_100085113 360
130 3300031728 Ga0316578_10089191 Ga0316578_100891912 360
131 3300031733 Ga0316577_10001002 Ga0316577_100010024 360
132 3300031733 Ga0316577_10041565 Ga0316577_100415652 360
133 3300032133 Ga0316583_10000040 Ga0316583_1000004014 360
134 3300032133 Ga0316583_10017308 Ga0316583_100173082 360
135 3300032137 Ga0316585_10000403 Ga0316585_100004036 360
136 3300032139 Ga0316580_10000309 Ga0316580_100003092 360
137 3300033541 Ga0316596_1004878 Ga0316596_10048781 360
138 3300035398 Ga0316574_0003092 Ga0316574_0003092_1233_2315 360
139 3300035398 Ga0316574_0116870 Ga0316574_0116870_569_1651 360
140 3300036647 Ga0316582_0000675 Ga0316582_0000675_637_1719 360
141 3300036647 Ga0316582_0019630 Ga0316582_0019630_2662_3744 360
142 3300036712 Ga0316584_0000065 Ga0316584_0000065_21747_22829 360
143 3300036712 Ga0316584_0091116 Ga0316584_0091116_490_1572 360
144 3300037588 Ga0316581_0001908 Ga0316581_0001908_2489_3571 360
145 3300037588 Ga0316581_0048425 Ga0316581_0048425_71_1153 360
146 3300031691 Ga0316579_10030318 Ga0316579_100303182 361
147 3300032168 Ga0316593_10029808 Ga0316593_100298082 361
148 3300037588 Ga0316581_0014069 Ga0316581_0014069_280_1398 361
149 3300005844 Ga0068862_100047272 Ga0068862_1000472723 362
150 3300028380 Ga0268265_10117274 Ga0268265_101172742 362
151 3300031733 Ga0316577_10011216 Ga0316577_100112162 364
152 3300035398 Ga0316574_0084661 Ga0316574_0084661_741_1835 364
153 3300036712 Ga0316584_0036063 Ga0316584_0036063_1398_2513 364
154 3300003323 rootH1_10091528 rootH1_100915285 371
155 3300044658 Ga0466972_0065791 Ga0466972_0065791_568_1683 371
156 3300044683 Ga0466965_0000955 Ga0466965_0000955_7161_8276 371
157 3300044735 Ga0466968_0002692 Ga0466968_0002692_5419_6534 371
158 3300044901 Ga0466960_0007998 Ga0466960_0007998_2876_3991 371

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

37

349

0.86

PF13434

Lys_Orn_oxgnase

L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

93

231

0.85

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

34

380

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
7a76-assembly1.cif.gz_C bacillithiol disulfide reductase bdr (ypda) from bacillus cereus 0.954 19 348
7a7b-assembly1.cif.gz_D bacillithiol disulfide reductase bdr (ypda) from staphylococcus aureus 0.942 19 347
7a76-assembly1.cif.gz_C bacillithiol disulfide reductase bdr (ypda) from bacillus cereus 0.9398 19 348
1vg0-assembly1.cif.gz_A the crystal structures of the rep-1 protein in complex with monoprenylated rab7 protein 0.9384 19 53
1vg9-assembly3.cif.gz_E the crystal structures of the rep-1 protein in complex with c-terminally truncated rab7 protein 0.9241 19 51
ID Description Score Start End Superfamily
4oqyB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9514 19 48 3.40.50.720
af_Q2FYF3_1_146_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9489 19 166 3.50.50.60
af_O60112_6_422_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9408 19 51 3.30.300.30
af_Q2FYF3_1_146_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9242 19 166 3.50.50.60
af_Q2FYF3_156_325_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9216 177 347 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A2E0UNU7-F1-model_v4 Pyridine nucleotide-disulfide oxidoreductase 0.9791 16 347 GO:0004497
GO:0050660
AF-A0A090D109-F1-model_v4 Putative thioredoxin reductase (EC 1.8.1.9) 0.9714 13 347 GO:0004497
GO:0004791
GO:0050660
AF-A0A7Y5LTN9-F1-model_v4 YpdA family putative bacillithiol disulfide reductase 0.9707 19 282 GO:0016491
AF-F8LD56-F1-model_v4 Uncharacterized protein ypdA (EC 1.8.1.9) 0.9697 16 350 GO:0004791
AF-A0A0D5BSF5-F1-model_v4 deleted 0.9676 17 345

Feature Viewer

pLDDT pTM Quality
87.48 0.84 High
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Predicted Structure (AlphaFold2)

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