F228492

General Info

Members Datasets Scaffolds Average Seq Length
157 126 314 568

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2721755523|2722883874
Length 626
Sequence PLAGLSGQSVQQFWNEQWSRTLQTLQQMGQPGLPGTQGMPGMPDMAQAWKAAVPEPGALPENALSLDPEKLLELQRQYLDGAKAMAEQGGAQALLAKDKRFNTESWAGNPLTAATAATYLLNSRMLMGLADAVQADDKTRNRVRFAIEQWLAAMAPSNFLALNAEAQKKAIETQGESLAQGVANLLADMRQGHVSMTDESLFTVGKNVATTEGAVVFENELFQLIEYKPLTDKVHERPFLMVPPCINKFYILDLQPDNSLIRYAVSQGHRTFVMSWRNPDESLARKTWDNYIEDGVLTGIRVAREIAGAEQINVLGFCVGGTMLSTALAVLQARHDREHGATAAPAAKAPVAKRAAGSRSAARTSTARATAPAGVPFPVASVTLLTTFIDFSDTGILDVFIDESVVRFREMQMGEGGLMKGQDLASTFSFLRPNDLVWNYVVGNYLKGETPPPFDLLYWNSDSTNLPGPYYAWYLRNLYLENKLAQPGALTVCGERIDMHQLRLPAYIYGSREDHIVPVGGSYASTQVLGGDKRFVMGASGHIAGVINPPAKKKRSYWLREDGQLPPTLKEWQAGADEYPGSWWADWSPWLAEHGGKLVAAPKQYGKGREYTAIEPAPGRYVLVKA

Samples

Sample ID Description Type Environment
1 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
2 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
3 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
4 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
32 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
40 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
41 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
43 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
60 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
62 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
63 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
64 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
65 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
71 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
72 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
73 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
78 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
79 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
80 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
81 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
82 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
83 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
84 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
85 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
88 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
89 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
90 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
91 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
92 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
93 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
97 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
102 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
103 3300049653 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control Metagenome Rhizosphere
104 3300049759 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought Metagenome Rhizosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
107 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
108 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
109 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
110 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
111 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
112 2721755523 Delftia sp. HK171 Isolate Unclassified
113 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
114 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
115 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
116 2643221660 Methylibium sp. Root1272 Isolate Unclassified
117 2643221683 Variovorax sp. Root473 Isolate Unclassified
118 2738541307 Variovorax sp. GV008 Isolate Unclassified
119 2842733646 Variovorax sp. R-72446 Isolate Unclassified
120 2885192300 Variovorax sp. MHTC-1 Isolate Rhizosphere
121 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
122 2919462493 Variovorax sp. 3319 Isolate Rhizosphere
123 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
124 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
125 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
126 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.45
Metatranscriptomes 0
Isolates 9.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.83
Nodule 1.27
Rhizoplane 6.37
Rhizosphere 61.78
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10000450 3300003215 Bacteria 26431
2 Ga0055526_1001717 3300003771 Bacteria 15247
3 Ga0055530_10011517 3300003791 Bacteria 3168
4 Ga0055540_1006920 3300003792 Bacteria 4390
5 Ga0055531_10000089 3300003794 Bacteria 100485
6 Ga0055531_10000490 3300003794 Bacteria 36246
7 Ga0070676_10001637 3300005328 Bacteria 11383
8 Ga0070676_10007016 3300005328 Bacteria 6032
9 Ga0070670_100148922 3300005331 Bacteria 2025
10 Ga0068869_100017914 3300005334 Bacteria 4813
11 Ga0070680_100010188 3300005336 Bacteria 7248
12 Ga0068868_100021554 3300005338 Bacteria 4853
13 Ga0070660_100028660 3300005339 Bacteria 4167
14 Ga0070669_100009237 3300005353 Bacteria 7024
15 Ga0070675_100018803 3300005354 Bacteria 5500
16 Ga0070671_100001871 3300005355 Bacteria 16082
17 Ga0070671_100023281 3300005355 Bacteria 5067
18 Ga0070671_100023946 3300005355 Bacteria 4996
19 Ga0070671_100043389 3300005355 Bacteria 3736
20 Ga0070673_100015622 3300005364 Bacteria 5339
21 Ga0070673_100063570 3300005364 Bacteria 2937
22 Ga0070667_100060537 3300005367 Bacteria 3204
23 Ga0070667_100112498 3300005367 Bacteria 2361
24 Ga0070678_100034454 3300005456 Bacteria 3527
25 Ga0068867_100003775 3300005459 Bacteria 10663
26 Ga0070672_100083004 3300005543 Bacteria 2571
27 Ga0070664_100159442 3300005564 Bacteria 1995
28 Ga0068857_100066862 3300005577 Bacteria 3199
29 Ga0068864_100158887 3300005618 Bacteria 2053
30 Ga0081455_10041426 3300005937 Bacteria 4049
31 Ga0075365_10060276 3300006038 Bacteria 2531
32 Ga0075364_10000144 3300006051 Bacteria 31200
33 Ga0075362_10015398 3300006177 Bacteria 3110
34 Ga0075366_10002123 3300006195 Bacteria 10083
35 Ga0075366_10041141 3300006195 Bacteria 2735
36 Ga0075370_10000458 3300006353 Bacteria 15179
37 Ga0068871_100030930 3300006358 Bacteria 4218
38 Ga0068865_100060846 3300006881 Bacteria 2645
39 Ga0079104_1000965 3300006946 Bacteria 22531
40 Ga0105250_10006773 3300009092 Bacteria 4975
41 Ga0111539_10150021 3300009094 Bacteria 2729
42 Ga0105243_10002049 3300009148 Bacteria 17085
43 Ga0105243_10184688 3300009148 Bacteria 1816
44 Ga0105248_10012482 3300009177 Bacteria 9372
45 Ga0157370_10076202 3300013104 Bacteria 3160
46 Ga0182008_10000979 3300014497 Bacteria 19823
47 Ga0182008_10008454 3300014497 Bacteria 5619
48 Ga0157376_10034396 3300014969 Bacteria 4092
49 Ga0157376_10045713 3300014969 Bacteria 3606
50 Ga0182007_10001863 3300015262 Bacteria 10999
51 Ga0183362_10001 3300015683 Bacteria 2046624
52 Ga0209673_1005016 3300025273 Bacteria 6838
53 Ga0209758_1000207 3300025297 Bacteria 129217
54 Ga0209050_1000890 3300025298 Bacteria 39735
55 Ga0209051_1000529 3300025303 Bacteria 47407
56 Ga0209051_1014705 3300025303 Bacteria 3637
57 Ga0209257_1000012 3300025304 Bacteria 1111138
58 Ga0209257_1000021 3300025304 Bacteria 771986
59 Ga0207696_1013537 3300025711 Bacteria 2838
60 Ga0207682_10012137 3300025893 Bacteria 3364
61 Ga0207645_10003150 3300025907 Bacteria 12634
62 Ga0207650_10010499 3300025925 Bacteria 6351
63 Ga0207644_10030035 3300025931 Bacteria 3774
64 Ga0207644_10084999 3300025931 Bacteria 2346
65 Ga0207709_10000241 3300025935 Bacteria 67520
66 Ga0207691_10018937 3300025940 Bacteria 6522
67 Ga0207691_10065617 3300025940 Bacteria 3285
68 Ga0207689_10009067 3300025942 Bacteria 8616
69 Ga0207677_10007652 3300026023 Bacteria 5997
70 Ga0207677_10125198 3300026023 Bacteria 1941
71 Ga0207641_10018421 3300026088 Bacteria 5725
72 Ga0207676_10011743 3300026095 Bacteria 6263
73 Ga0207676_10019060 3300026095 Bacteria 4999
74 Ga0207683_10122488 3300026121 Bacteria 2335
75 Ga0207698_10015154 3300026142 Bacteria 5155
76 Ga0209281_1000005 3300027111 Bacteria 1242284
77 Ga0209974_10010393 3300027876 Bacteria 3141
78 Ga0307515_10000195 3300028794 Bacteria 148138
79 Ga0307515_10000757 3300028794 Bacteria 74840
80 Ga0307515_10002278 3300028794 Bacteria 42025
81 Ga0307515_10002502 3300028794 Bacteria 39826
82 Ga0265332_10010255 3300031238 Bacteria 4170
83 Ga0307408_100076868 3300031548 Bacteria 2484
84 Ga0307508_10000061 3300031616 Bacteria 124749
85 Ga0307514_10001419 3300031649 Bacteria 29520
86 Ga0307514_10002931 3300031649 Bacteria 16975
87 Ga0307514_10003371 3300031649 Bacteria 15418
88 Ga0265314_10014068 3300031711 Bacteria 6426
89 Ga0307516_10038132 3300031730 Bacteria 4799
90 Ga0307412_10015393 3300031911 Bacteria 4535
91 Ga0307416_100075216 3300032002 Bacteria 2825
92 Ga0307507_10076753 3300033179 Bacteria 2977
93 Ga0307510_10001753 3300033180 Bacteria 24194
94 Ga0373948_0004877 3300034817 Bacteria 2145
95 Ga0373937_0081011 3300036401 Bacteria 3003
96 Ga0373925_0078873 3300037068 Bacteria 2501
97 Ga0395905_0026744 3300037471 Bacteria 5440
98 Ga0395905_0042101 3300037471 Bacteria 4285
99 Ga0395905_0107398 3300037471 Bacteria 2620
100 Ga0436361_0048138 3300039447 Bacteria 5462
101 Ga0436361_0099917 3300039447 Bacteria 3276
102 Ga0439436_0000260 3300041404 Bacteria 12706
103 Ga0439439_0006711 3300041406 Bacteria 2668
104 Ga0439466_0020610 3300041411 Bacteria 2348
105 Ga0439433_0001399 3300041999 Bacteria 4957
106 Ga0439449_0007367 3300042007 Bacteria 4181
107 Ga0439449_0012216 3300042007 Bacteria 3228
108 Ga0439452_004990 3300042010 Bacteria 4342
109 Ga0439434_0005031 3300042435 Bacteria 3864
110 Ga0466969_0009476 3300044656 Bacteria 5163
111 Ga0466965_0011198 3300044683 Bacteria 4198
112 Ga0451576_0171600 3300045051 Bacteria 2264
113 Ga0495629_0120991 3300046459 Bacteria 1824
114 Ga0495639_0004033 3300046475 Bacteria 6292
115 Ga0495621_0005543 3300046539 Bacteria 3633
116 Ga0495656_0000447 3300046615 Bacteria 13485
117 Ga0495625_0142799 3300046660 Bacteria 1614
118 Ga0495676_0075213 3300047321 Bacteria 2584
119 Ga0495686_0005051 3300047472 Bacteria 10581
120 Ga0496101_0000615 3300048904 Bacteria 21702
121 Ga0496104_0020542 3300048907 Bacteria 6054
122 Ga0496104_0040840 3300048907 Bacteria 4349
123 Ga0496105_0009353 3300048908 Bacteria 7660
124 Ga0496105_0086785 3300048908 Bacteria 2586
125 Ga0496106_0007244 3300048909 Bacteria 8194
126 Ga0496108_0036786 3300048911 Bacteria 4074
127 Ga0496109_0117153 3300048912 Bacteria 2479
128 Ga0496109_0156564 3300048912 Bacteria 2134
129 Ga0496110_0103518 3300048913 Bacteria 2553
130 Ga0496124_0000317 3300048927 Bacteria 89188
131 Ga0501292_001722 3300049515 Bacteria 2727
132 Ga0501206_003420 3300049653 Bacteria 2016
133 Ga0501262_000661 3300049759 Bacteria 4019
134 nmdc:mga00v17_3418_c1 3300050491 Bacteria 8206
135 nmdc:mga0k408_28089_c1 3300050493 Bacteria 3198
136 nmdc:mga07m45_12113_c1 3300050496 Bacteria 4551
137 nmdc:mga07m45_14822_c1 3300050496 Bacteria 4162
138 nmdc:mga07m45_683_c1 3300050496 Bacteria 14405
139 Ga0500578_0001121 3300053086 Bacteria 28736
140 Ga0500651_0012500 3300053093 Bacteria 5148
141 Ga0500652_000924 3300053131 Bacteria 9692
142 Ga0500622_0000270 3300053156 Bacteria 53295
143 2722883874 2721755523 Bacteria 6430384
144 2643969193 2643221592 Bacteria 6608788
145 2644140767 2643221625 Bacteria 6512927
146 2644272144 2643221648 Bacteria 6521465
147 2644337847 2643221660 Bacteria 4208257
148 2644467831 2643221683 Bacteria 5749203
149 2738878892 2738541307 Bacteria 8606193
150 2842735377 2842733646 Bacteria 5716726
151 2885197367 2885192300 Bacteria 5882526
152 2904480382 2904479285 Bacteria 5073931
153 2919465183 2919462493 Bacteria 5817112
154 2928115398 2928115317 Bacteria 6477646
155 2939636086 2939631187 Bacteria 6118131
156 2945986569 2945984333 Bacteria 7358892
157 2954772746 2954767861 Bacteria 5535784
158 JGI25153J46596_10000450
159 Ga0055526_1001717
160 Ga0055530_10011517
161 Ga0055540_1006920
162 Ga0055531_10000089
163 Ga0055531_10000490
164 Ga0070676_10001637
165 Ga0070676_10007016
166 Ga0070670_100148922
167 Ga0068869_100017914
168 Ga0070680_100010188
169 Ga0068868_100021554
170 Ga0070660_100028660
171 Ga0070669_100009237
172 Ga0070675_100018803
173 Ga0070671_100001871
174 Ga0070671_100023281
175 Ga0070671_100023946
176 Ga0070671_100043389
177 Ga0070673_100015622
178 Ga0070673_100063570
179 Ga0070667_100060537
180 Ga0070667_100112498
181 Ga0070678_100034454
182 Ga0068867_100003775
183 Ga0070672_100083004
184 Ga0070664_100159442
185 Ga0068857_100066862
186 Ga0068864_100158887
187 Ga0081455_10041426
188 Ga0075365_10060276
189 Ga0075364_10000144
190 Ga0075362_10015398
191 Ga0075366_10002123
192 Ga0075366_10041141
193 Ga0075370_10000458
194 Ga0068871_100030930
195 Ga0068865_100060846
196 Ga0079104_1000965
197 Ga0105250_10006773
198 Ga0111539_10150021
199 Ga0105243_10002049
200 Ga0105243_10184688
201 Ga0105248_10012482
202 Ga0157370_10076202
203 Ga0182008_10000979
204 Ga0182008_10008454
205 Ga0157376_10034396
206 Ga0157376_10045713
207 Ga0182007_10001863
208 Ga0183362_10001
209 Ga0209673_1005016
210 Ga0209758_1000207
211 Ga0209050_1000890
212 Ga0209051_1000529
213 Ga0209051_1014705
214 Ga0209257_1000012
215 Ga0209257_1000021
216 Ga0207696_1013537
217 Ga0207682_10012137
218 Ga0207645_10003150
219 Ga0207650_10010499
220 Ga0207644_10030035
221 Ga0207644_10084999
222 Ga0207709_10000241
223 Ga0207691_10018937
224 Ga0207691_10065617
225 Ga0207689_10009067
226 Ga0207677_10007652
227 Ga0207677_10125198
228 Ga0207641_10018421
229 Ga0207676_10011743
230 Ga0207676_10019060
231 Ga0207683_10122488
232 Ga0207698_10015154
233 Ga0209281_1000005
234 Ga0209974_10010393
235 Ga0307515_10000195
236 Ga0307515_10000757
237 Ga0307515_10002278
238 Ga0307515_10002502
239 Ga0265332_10010255
240 Ga0307408_100076868
241 Ga0307508_10000061
242 Ga0307514_10001419
243 Ga0307514_10002931
244 Ga0307514_10003371
245 Ga0265314_10014068
246 Ga0307516_10038132
247 Ga0307412_10015393
248 Ga0307416_100075216
249 Ga0307507_10076753
250 Ga0307510_10001753
251 Ga0373948_0004877
252 Ga0373937_0081011
253 Ga0373925_0078873
254 Ga0395905_0026744
255 Ga0395905_0042101
256 Ga0395905_0107398
257 Ga0436361_0048138
258 Ga0436361_0099917
259 Ga0439436_0000260
260 Ga0439439_0006711
261 Ga0439466_0020610
262 Ga0439433_0001399
263 Ga0439449_0007367
264 Ga0439449_0012216
265 Ga0439452_004990
266 Ga0439434_0005031
267 Ga0466969_0009476
268 Ga0466965_0011198
269 Ga0451576_0171600
270 Ga0495629_0120991
271 Ga0495639_0004033
272 Ga0495621_0005543
273 Ga0495656_0000447
274 Ga0495625_0142799
275 Ga0495676_0075213
276 Ga0495686_0005051
277 Ga0496101_0000615
278 Ga0496104_0020542
279 Ga0496104_0040840
280 Ga0496105_0009353
281 Ga0496105_0086785
282 Ga0496106_0007244
283 Ga0496108_0036786
284 Ga0496109_0117153
285 Ga0496109_0156564
286 Ga0496110_0103518
287 Ga0496124_0000317
288 Ga0501292_001722
289 Ga0501206_003420
290 Ga0501262_000661
291 nmdc:mga00v17_3418_c1
292 nmdc:mga0k408_28089_c1
293 nmdc:mga07m45_12113_c1
294 nmdc:mga07m45_14822_c1
295 nmdc:mga07m45_683_c1
296 Ga0500578_0001121
297 Ga0500651_0012500
298 Ga0500652_000924
299 Ga0500622_0000270
300 2722883874
301 2643969193
302 2644140767
303 2644272144
304 2644337847
305 2644467831
306 2738878892
307 2842735377
308 2885197367
309 2904480382
310 2919465183
311 2928115398
312 2939636086
313 2945986569
314 2954772746

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07167

PhaC_N

Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus

97

264

0.99

PF00561

Abhydrolase_1

alpha/beta hydrolase fold

364

549

0.89

PF00561

Abhydrolase_1

alpha/beta hydrolase fold

239

337

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5xav-assembly1.cif.gz_B structure of phac from chromobacterium sp. usm2 0.9321 173 559
5xav-assembly1.cif.gz_A structure of phac from chromobacterium sp. usm2 0.9253 173 562
6k3c-assembly1.cif.gz_A crystal structure of class i pha synthase (phac) mutant from chromobacterium sp. usm2 bound to coenzyme a. 0.9201 173 563
6k3c-assembly1.cif.gz_A crystal structure of class i pha synthase (phac) mutant from chromobacterium sp. usm2 bound to coenzyme a. 0.9088 173 563
5xav-assembly1.cif.gz_A structure of phac from chromobacterium sp. usm2 0.9086 173 562
ID Description Score Start End Superfamily
3qzuA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.7822 208 318 3.40.50.1820
af_O33185_49_361_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.7641 193 479 3.40.50.1820
af_A0A1P8AWG3_71_440_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.7564 195 483 3.40.50.1820
af_O33185_49_361_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.7034 193 479 3.40.50.1820
af_Q86HC9_28_214_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.6984 210 318 3.40.50.1820
ID Description Score Start End GO Terms
AF-A0A3B8W951-F1-model_v4 Class I poly(R)-hydroxyalkanoic acid synthase 0.985 184 331 GO:0016746
GO:0042619
AF-A0A3B8W951-F1-model_v4 Class I poly(R)-hydroxyalkanoic acid synthase 0.9785 184 331 GO:0016746
GO:0042619
AF-A0A1I5AME1-F1-model_v4 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 0.9762 193 302 GO:0016746
GO:0042619
AF-A0A526YLQ2-F1-model_v4 Alpha/beta fold hydrolase 0.9664 197 341 GO:0016746
GO:0016787
GO:0042619
AF-A0A540WHS3-F1-model_v4 Alpha/beta fold hydrolase 0.947 163 344 GO:0016746
GO:0016787
GO:0042619

Map