F228315

General Info

Members Datasets Scaffolds Average Seq Length
157 135 131 318

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0193457|Ga0501047_0193457_68_1117
Length 349
Sequence MKVVIPGGTGQVGTILDRALTAAGHEVVVLTRRPAHERQVHWDGRTLGPWADVIDGGDVVINLAGRSVSCRYTPANLQEMMDSRVLSARAVGQAIAAAAKPPRVWLQMSTATIYAHRFDAPNDEATGVIGGREPGVPGYWEYSVRIARNWEREQDRAATPHTRKVALRAAMVMSPDRGGVFDVLSWLARLGLGGPVAGGAQYVSWIHDEDFVRAVEFLIDRDDFTGPVNLAAPEPLPHRSFMRALRTAWRMPVGLPATAWMAELGALAIRSDTELLLKSRRVIPGRLTEAGFTFDHPRWPEAAADLAHRRRATNPQRSHNNQYGSIPLTAWGRRLKVEVTGLDPVDQSR

Samples

Sample ID Description Type Environment
1 2643221647 Streptomyces sp. Root369 Isolate Unclassified
2 2643221714 Streptomyces sp. Root264 Isolate Unclassified
3 2671180195 Frankia sp. CcI49 Isolate Nodule
4 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
5 2773857922 Frankia sp. CcI49 Isolate Nodule
6 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
7 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
8 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
9 2855683550 Micromonospora sp. RP3T Isolate Unclassified
10 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
11 2862574272 Streptomyces sp. AcE210 Isolate Nodule
12 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
13 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
14 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
15 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
16 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
17 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
18 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
19 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
20 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
22 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
23 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
24 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
25 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
26 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
27 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
35 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
36 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
37 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
40 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
41 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
42 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
43 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
44 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
45 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
46 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
47 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
48 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
49 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
50 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
51 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
52 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
53 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
54 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
55 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
56 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
57 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
58 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
59 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
60 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
61 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
62 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
63 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
64 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
65 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
66 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
67 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
68 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
69 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
70 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
71 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
72 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
73 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
76 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
77 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
78 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
79 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
80 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
81 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
82 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
83 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
84 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
85 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
86 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
87 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
88 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
89 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
90 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
91 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
92 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
93 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
94 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
95 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
96 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
97 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
98 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
99 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
100 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
101 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
116 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
117 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
118 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
121 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
122 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
123 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
124 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
125 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
126 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
127 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
128 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
129 8002775197 Frankia nepalensis CN7 Isolate Nodule
130 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
131 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
132 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
133 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule
134 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
135 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.44
Metatranscriptomes 0
Isolates 16.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.01
Nodule 4.46
Rhizoplane 2.55
Rhizosphere 68.79
Stem 0
Stem Tuber 0
Unclassified 17.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10003124 3300003203 Bacteria 7781
2 rootH2_10066393 3300003320 Bacteria 2593
3 JGI25160J50197_1032896 3300003354 Bacteria 1311
4 Ga0070710_10107484 3300005437 Bacteria 1671
5 Ga0070663_100004439 3300005455 Bacteria 8246
6 Ga0070706_100000079 3300005467 Bacteria 111752
7 Ga0070707_100012172 3300005468 Bacteria 8030
8 Ga0070697_100003825 3300005536 Bacteria 11562
9 Ga0070665_100254734 3300005548 Bacteria 1756
10 Ga0081540_1011536 3300005983 Bacteria 5903
11 Ga0081539_10000086 3300005985 Bacteria 217801
12 Ga0075434_100040518 3300006871 Bacteria 4612
13 Ga0105246_10075945 3300011119 Bacteria 2380
14 Ga0157369_10272804 3300013105 Bacteria 1762
15 Ga0182008_10007482 3300014497 Bacteria 6026
16 Ga0182007_10000273 3300015262 Bacteria 34091
17 Ga0209758_1043068 3300025297 Bacteria 1667
18 Ga0207426_1001945 3300025302 Bacteria 14782
19 Ga0207426_1003597 3300025302 Bacteria 8231
20 Ga0207684_10000068 3300025910 Bacteria 191048
21 Ga0307515_10099039 3300028794 Bacteria 3543
22 Ga0307511_10000474 3300030521 Bacteria 43520
23 Ga0307511_10050951 3300030521 Bacteria 3327
24 Ga0316181_1232494 3300030744 Bacteria 1531
25 Ga0307513_10000002 3300031456 Bacteria 842612
26 Ga0307513_10278453 3300031456 Bacteria 1451
27 Ga0307509_10334314 3300031507 Bacteria 1245
28 Ga0307508_10008379 3300031616 Bacteria 9553
29 Ga0307508_10023718 3300031616 Bacteria 5571
30 Ga0307516_10047748 3300031730 Bacteria 4215
31 Ga0307413_10107352 3300031824 Bacteria 1860
32 Ga0307518_10035742 3300031838 Bacteria 3608
33 Ga0307518_10113356 3300031838 Bacteria 1929
34 Ga0307507_10102613 3300033179 Bacteria 2385
35 Ga0307510_10117802 3300033180 Bacteria 2371
36 Ga0373951_0007486 3300035091 Bacteria 2478
37 Ga0373956_0006764 3300035119 Bacteria 4598
38 Ga0373962_0003815 3300035242 Bacteria 3622
39 Ga0395898_0029261 3300037466 Bacteria 5518
40 Ga0395905_0000979 3300037471 Bacteria 36648
41 Ga0395901_0104403 3300038443 Bacteria 2974
42 Ga0436365_0829298 3300039437 Bacteria 5991
43 Ga0439436_0015168 3300041404 Bacteria 2319
44 Ga0451797_1287302 3300041453 Bacteria 1237
45 Ga0451853_2825233 3300041512 Bacteria 4438
46 Ga0439433_0017211 3300041999 Bacteria 1604
47 Ga0439449_0021800 3300042007 Bacteria 2397
48 Ga0439457_002264 3300042014 Bacteria 5557
49 Ga0450894_000384 3300042131 Bacteria 7637
50 Ga0450896_004797 3300042133 Bacteria 1837
51 Ga0450898_007785 3300042134 Bacteria 1675
52 Ga0450899_000687 3300042135 Bacteria 3858
53 Ga0450906_012199 3300042145 Bacteria 1595
54 Ga0466969_0018172 3300044656 Bacteria 3666
55 Ga0466969_0076725 3300044656 Bacteria 1600
56 Ga0466972_0012840 3300044658 Bacteria 4206
57 Ga0466965_0012960 3300044683 Bacteria 3927
58 Ga0466965_0029794 3300044683 Bacteria 2657
59 Ga0466966_0007904 3300044684 Bacteria 7040
60 Ga0466961_0000834 3300044693 Bacteria 19265
61 Ga0466961_0112890 3300044693 Bacteria 1709
62 Ga0466971_0139837 3300044719 Bacteria 1127
63 Ga0466970_0002425 3300044765 Bacteria 9008
64 Ga0466970_0005388 3300044765 Bacteria 6347
65 Ga0466970_0106367 3300044765 Bacteria 1530
66 Ga0466959_0047159 3300045049 Bacteria 3170
67 Ga0495592_0083108 3300046454 Bacteria 2313
68 Ga0495603_0004040 3300046455 Bacteria 8736
69 Ga0495629_0038611 3300046459 Bacteria 3362
70 Ga0495638_0126036 3300046460 Bacteria 1509
71 Ga0495651_0013688 3300046462 Bacteria 6269
72 Ga0495662_0058768 3300046476 Bacteria 1857
73 Ga0495594_0057427 3300046499 Bacteria 2149
74 Ga0495607_0143777 3300046501 Bacteria 1228
75 Ga0495628_0110271 3300046516 Bacteria 2117
76 Ga0495631_0072923 3300046518 Bacteria 1483
77 Ga0495643_0014987 3300046522 Bacteria 4595
78 Ga0495652_0001294 3300046529 Bacteria 27955
79 Ga0495667_0050397 3300046559 Bacteria 2749
80 Ga0495611_0039649 3300046648 Bacteria 2098
81 Ga0495588_0003930 3300046674 Bacteria 6519
82 Ga0495657_0003786 3300046675 Bacteria 12242
83 Ga0495613_0003119 3300046689 Bacteria 12407
84 Ga0495613_0071021 3300046689 Bacteria 2538
85 Ga0495671_0005870 3300046692 Bacteria 7148
86 Ga0495600_0010705 3300046809 Bacteria 5701
87 Ga0495600_0142750 3300046809 Bacteria 1553
88 Ga0495680_0216301 3300047322 Bacteria 1370
89 Ga0495687_102305 3300047443 Bacteria 1072
90 Ga0495675_0046089 3300047444 Bacteria 2776
91 Ga0495675_0062923 3300047444 Bacteria 2348
92 Ga0495685_017003 3300047447 Bacteria 2487
93 Ga0495681_0008885 3300047470 Bacteria 6244
94 Ga0495681_0053980 3300047470 Bacteria 1879
95 Ga0495686_0023234 3300047472 Bacteria 4092
96 Ga0496104_0425794 3300048907 Bacteria 1239
97 Ga0496108_0193542 3300048911 Bacteria 1763
98 Ga0496109_0188002 3300048912 Bacteria 1940
99 Ga0501031_0036515 3300049568 Bacteria 3205
100 Ga0501032_0053789 3300049569 Bacteria 2710
101 Ga0501033_0017251 3300049570 Bacteria 5455
102 Ga0501033_0149088 3300049570 Bacteria 1688
103 Ga0501036_0042112 3300049572 Bacteria 3866
104 Ga0501037_0029016 3300049573 Bacteria 4086
105 Ga0501037_0048157 3300049573 Bacteria 3124
106 Ga0501038_0052416 3300049574 Bacteria 3518
107 Ga0501038_0100171 3300049574 Bacteria 2414
108 Ga0501039_0069361 3300049575 Bacteria 2738
109 Ga0501042_0008716 3300049578 Bacteria 6726
110 Ga0501043_0013389 3300049579 Bacteria 6414
111 Ga0501046_0020106 3300049580 Bacteria 5527
112 Ga0501047_0014079 3300049581 Bacteria 7601
113 Ga0501047_0031529 3300049581 Bacteria 5112
114 Ga0501047_0193457 3300049581 Bacteria 1897
115 Ga0501070_0110854 3300049586 Bacteria 2268
116 Ga0501073_0068308 3300049589 Bacteria 2477
117 Ga0501080_0203040 3300049742 Bacteria 1819
118 Ga0501035_0017527 3300049822 Bacteria 6608
119 Ga0501035_0026328 3300049822 Bacteria 5322
120 Ga0501035_0036656 3300049822 Bacteria 4443
121 Ga0501044_0003245 3300049823 Bacteria 18288
122 nmdc:mga0n895_24102_c1 3300050512 Bacteria 5730
123 Ga0495601_0006217 3300053077 Bacteria 6975
124 Ga0495601_0229741 3300053077 Bacteria 1212
125 Ga0500578_0016693 3300053086 Bacteria 4716
126 Ga0500644_0044952 3300053088 Bacteria 1485
127 Ga0500560_001920 3300053107 Bacteria 3808
128 Ga0500569_004363 3300053109 Bacteria 2967
129 Ga0500658_0022508 3300053134 Bacteria 2397
130 Ga0500561_0001807 3300053137 Bacteria 3528
131 Ga0500616_0055749 3300053153 Bacteria 2065

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300006871 Ga0075434_100040518 Ga0075434_1000405184 267
2 3300050512 nmdc:mga0n895_24102_c1 nmdc:mga0n895_24102_c1_4732_5577 267
3 3300003320 rootH2_10066393 rootH2_100663932 274
4 3300041453 Ga0451797_1287302 Ga0451797_1287302_51_914 274
5 3300047444 Ga0495675_0062923 Ga0495675_0062923_46_996 282
6 3300053077 Ga0495601_0229741 Ga0495601_0229741_95_1042 284
7 3300046455 Ga0495603_0004040 Ga0495603_0004040_4863_5792 286
8 iso_pu_bacteria 2862382967 2862387048 287
9 3300005467 Ga0070706_100000079 Ga0070706_10000007918 291
10 3300005468 Ga0070707_100012172 Ga0070707_1000121724 291
11 3300005536 Ga0070697_100003825 Ga0070697_10000382510 291
12 3300025910 Ga0207684_10000068 Ga0207684_10000068160 291
13 3300047443 Ga0495687_102305 Ga0495687_102305_107_1045 291
14 3300049589 Ga0501073_0068308 Ga0501073_0068308_1543_2457 291
15 3300046454 Ga0495592_0083108 Ga0495592_0083108_296_1243 293
16 3300046462 Ga0495651_0013688 Ga0495651_0013688_1722_2669 293
17 3300046516 Ga0495628_0110271 Ga0495628_0110271_1083_2030 293
18 3300046529 Ga0495652_0001294 Ga0495652_0001294_6767_7714 293
19 3300046809 Ga0495600_0010705 Ga0495600_0010705_1125_2072 293
20 3300041999 Ga0439433_0017211 Ga0439433_0017211_338_1336 296
21 3300042007 Ga0439449_0021800 Ga0439449_0021800_398_1396 296
22 3300042014 Ga0439457_002264 Ga0439457_002264_3032_4030 296
23 3300044683 Ga0466965_0029794 Ga0466965_0029794_319_1239 298
24 iso_pu_bacteria 2643221647 2644267568 298
25 iso_pu_bacteria 2643221714 2644630136 298
26 iso_pu_bacteria 2671180195 2671832542 298
27 iso_pu_bacteria 2675903060 2676490755 298
28 iso_pu_bacteria 2773857922 2774850698 298
29 iso_pu_bacteria 2784746763 2785338870 298
30 iso_pu_bacteria 2811994879 2812361739 298
31 iso_pu_bacteria 2855683550 2855686577 298
32 iso_pu_bacteria 2862574272 2862574665 298
33 iso_pu_bacteria 2891326441 2891327004 298
34 iso_pu_bacteria 2891968417 2891969068 298
35 iso_pu_bacteria 2946064051 2946064426 298
36 iso_pu_bacteria 2954380949 2954381016 298
37 iso_pu_bacteria 2954691527 2954701159 298
38 iso_pu_bacteria 2954701450 2954706184 298
39 iso_pu_bacteria 2995463766 2995470639 298
40 iso_pu_bacteria 8002775197 8002782988 298
41 iso_pu_bacteria 8003314358 8003321381 298
42 iso_pu_bacteria 8008558824 8008560444 298
43 iso_pu_bacteria 8033684223 8033687880 298
44 iso_pu_bacteria 8055157932 8055162835 298
45 iso_pu_bacteria 8056667051 8056671078 298
46 iso_pu_bacteria 8056829672 8056830645 298
47 3300028794 Ga0307515_10099039 Ga0307515_100990394 301
48 3300031507 Ga0307509_10334314 Ga0307509_103343141 301
49 3300041404 Ga0439436_0015168 Ga0439436_0015168_974_1972 301
50 3300044656 Ga0466969_0076725 Ga0466969_0076725_291_1310 301
51 3300044683 Ga0466965_0012960 Ga0466965_0012960_173_1093 301
52 3300044693 Ga0466961_0112890 Ga0466961_0112890_70_1017 301
53 3300044765 Ga0466970_0106367 Ga0466970_0106367_412_1359 301
54 3300045049 Ga0466959_0047159 Ga0466959_0047159_310_1257 301
55 3300003203 JGI25406J46586_10003124 JGI25406J46586_100031246 302
56 3300003354 JGI25160J50197_1032896 JGI25160J50197_10328961 302
57 3300005437 Ga0070710_10107484 Ga0070710_101074841 302
58 3300005455 Ga0070663_100004439 Ga0070663_1000044395 302
59 3300005548 Ga0070665_100254734 Ga0070665_1002547342 302
60 3300005983 Ga0081540_1011536 Ga0081540_10115363 302
61 3300005985 Ga0081539_10000086 Ga0081539_1000008695 302
62 3300011119 Ga0105246_10075945 Ga0105246_100759452 302
63 3300013105 Ga0157369_10272804 Ga0157369_102728042 302
64 3300014497 Ga0182008_10007482 Ga0182008_100074823 302
65 3300015262 Ga0182007_10000273 Ga0182007_1000027318 302
66 3300025297 Ga0209758_1043068 Ga0209758_10430681 302
67 3300025302 Ga0207426_1001945 Ga0207426_100194516 302
68 3300025302 Ga0207426_1003597 Ga0207426_10035973 302
69 3300030521 Ga0307511_10000474 Ga0307511_1000047424 302
70 3300030521 Ga0307511_10050951 Ga0307511_100509513 302
71 3300030744 Ga0316181_1232494 Ga0316181_12324942 302
72 3300031456 Ga0307513_10000002 Ga0307513_10000002205 302
73 3300031456 Ga0307513_10278453 Ga0307513_102784532 302
74 3300031616 Ga0307508_10008379 Ga0307508_100083795 302
75 3300031616 Ga0307508_10023718 Ga0307508_100237182 302
76 3300031730 Ga0307516_10047748 Ga0307516_100477482 302
77 3300031824 Ga0307413_10107352 Ga0307413_101073521 302
78 3300031838 Ga0307518_10035742 Ga0307518_100357422 302
79 3300031838 Ga0307518_10113356 Ga0307518_101133562 302
80 3300033179 Ga0307507_10102613 Ga0307507_101026132 302
81 3300033180 Ga0307510_10117802 Ga0307510_101178022 302
82 3300035091 Ga0373951_0007486 Ga0373951_0007486_1413_2375 302
83 3300035119 Ga0373956_0006764 Ga0373956_0006764_446_1432 302
84 3300035242 Ga0373962_0003815 Ga0373962_0003815_1273_2262 302
85 3300037466 Ga0395898_0029261 Ga0395898_0029261_962_1936 302
86 3300037471 Ga0395905_0000979 Ga0395905_0000979_6748_7704 302
87 3300038443 Ga0395901_0104403 Ga0395901_0104403_567_1541 302
88 3300039437 Ga0436365_0829298 Ga0436365_0829298_2441_3397 302
89 3300041512 Ga0451853_2825233 Ga0451853_2825233_616_1557 302
90 3300042131 Ga0450894_000384 Ga0450894_000384_6457_7425 302
91 3300042133 Ga0450896_004797 Ga0450896_004797_72_1040 302
92 3300042134 Ga0450898_007785 Ga0450898_007785_567_1535 302
93 3300042135 Ga0450899_000687 Ga0450899_000687_409_1377 302
94 3300042145 Ga0450906_012199 Ga0450906_012199_358_1326 302
95 3300044656 Ga0466969_0018172 Ga0466969_0018172_32_955 302
96 3300044658 Ga0466972_0012840 Ga0466972_0012840_1636_2601 302
97 3300044684 Ga0466966_0007904 Ga0466966_0007904_6096_7019 302
98 3300044693 Ga0466961_0000834 Ga0466961_0000834_2591_3514 302
99 3300044719 Ga0466971_0139837 Ga0466971_0139837_71_1060 302
100 3300044765 Ga0466970_0002425 Ga0466970_0002425_6938_7861 302
101 3300044765 Ga0466970_0005388 Ga0466970_0005388_1634_2641 302
102 3300046459 Ga0495629_0038611 Ga0495629_0038611_2154_3125 302
103 3300046460 Ga0495638_0126036 Ga0495638_0126036_265_1236 302
104 3300046476 Ga0495662_0058768 Ga0495662_0058768_186_1154 302
105 3300046499 Ga0495594_0057427 Ga0495594_0057427_80_1024 302
106 3300046501 Ga0495607_0143777 Ga0495607_0143777_72_1049 302
107 3300046518 Ga0495631_0072923 Ga0495631_0072923_140_1117 302
108 3300046522 Ga0495643_0014987 Ga0495643_0014987_1517_2461 302
109 3300046559 Ga0495667_0050397 Ga0495667_0050397_1534_2514 302
110 3300046648 Ga0495611_0039649 Ga0495611_0039649_274_1251 302
111 3300046674 Ga0495588_0003930 Ga0495588_0003930_4600_5571 302
112 3300046675 Ga0495657_0003786 Ga0495657_0003786_5514_6494 302
113 3300046689 Ga0495613_0003119 Ga0495613_0003119_4353_5333 302
114 3300046689 Ga0495613_0071021 Ga0495613_0071021_1474_2445 302
115 3300046692 Ga0495671_0005870 Ga0495671_0005870_2628_3599 302
116 3300046809 Ga0495600_0142750 Ga0495600_0142750_74_1054 302
117 3300047322 Ga0495680_0216301 Ga0495680_0216301_241_1221 302
118 3300047444 Ga0495675_0046089 Ga0495675_0046089_967_1947 302
119 3300047447 Ga0495685_017003 Ga0495685_017003_286_1263 302
120 3300047470 Ga0495681_0008885 Ga0495681_0008885_274_1245 302
121 3300047470 Ga0495681_0053980 Ga0495681_0053980_304_1248 302
122 3300047472 Ga0495686_0023234 Ga0495686_0023234_2574_3557 302
123 3300048907 Ga0496104_0425794 Ga0496104_0425794_12_995 302
124 3300048911 Ga0496108_0193542 Ga0496108_0193542_25_1035 302
125 3300048912 Ga0496109_0188002 Ga0496109_0188002_157_1167 302
126 3300049568 Ga0501031_0036515 Ga0501031_0036515_1435_2385 302
127 3300049569 Ga0501032_0053789 Ga0501032_0053789_115_1065 302
128 3300049570 Ga0501033_0017251 Ga0501033_0017251_2659_3603 302
129 3300049570 Ga0501033_0149088 Ga0501033_0149088_599_1549 302
130 3300049572 Ga0501036_0042112 Ga0501036_0042112_111_1061 302
131 3300049573 Ga0501037_0029016 Ga0501037_0029016_98_1048 302
132 3300049573 Ga0501037_0048157 Ga0501037_0048157_243_1190 302
133 3300049574 Ga0501038_0052416 Ga0501038_0052416_150_1100 302
134 3300049574 Ga0501038_0100171 Ga0501038_0100171_119_1093 302
135 3300049575 Ga0501039_0069361 Ga0501039_0069361_1632_2582 302
136 3300049578 Ga0501042_0008716 Ga0501042_0008716_5687_6637 302
137 3300049579 Ga0501043_0013389 Ga0501043_0013389_120_1070 302
138 3300049580 Ga0501046_0020106 Ga0501046_0020106_3131_4081 302
139 3300049581 Ga0501047_0014079 Ga0501047_0014079_6391_7338 302
140 3300049581 Ga0501047_0031529 Ga0501047_0031529_3128_4069 302
141 3300049581 Ga0501047_0193457 Ga0501047_0193457_68_1117 302
142 3300049586 Ga0501070_0110854 Ga0501070_0110854_127_1152 302
143 3300049742 Ga0501080_0203040 Ga0501080_0203040_332_1357 302
144 3300049822 Ga0501035_0017527 Ga0501035_0017527_106_1053 302
145 3300049822 Ga0501035_0026328 Ga0501035_0026328_2834_3859 302
146 3300049822 Ga0501035_0036656 Ga0501035_0036656_1598_2548 302
147 3300049823 Ga0501044_0003245 Ga0501044_0003245_6182_7129 302
148 3300053077 Ga0495601_0006217 Ga0495601_0006217_2601_3584 302
149 3300053086 Ga0500578_0016693 Ga0500578_0016693_3356_4300 302
150 3300053088 Ga0500644_0044952 Ga0500644_0044952_238_1209 302
151 3300053107 Ga0500560_001920 Ga0500560_001920_2284_3255 302
152 3300053109 Ga0500569_004363 Ga0500569_004363_927_1871 302
153 3300053134 Ga0500658_0022508 Ga0500658_0022508_575_1519 302
154 3300053137 Ga0500561_0001807 Ga0500561_0001807_416_1360 302
155 3300053153 Ga0500616_0055749 Ga0500616_0055749_945_1889 302
156 iso_pu_bacteria 2795385470 2795784286 302
157 iso_pu_bacteria 3006393351 3006396962 302

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08338

DUF1731

Domain of unknown function (DUF1731)

257

306

0.83

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

3

231

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
4b4o-assembly6.cif.gz_F crystal structure of human epimerase family protein sdr39u1 (isoform2) with nadph 0.8724 1 301
4b4o-assembly6.cif.gz_F crystal structure of human epimerase family protein sdr39u1 (isoform2) with nadph 0.8649 1 301
3oh8-assembly1.cif.gz_A crystal structure of the nucleoside-diphosphate sugar epimerase from corynebacterium glutamicum. northeast structural genomics consortium target cgr91 0.8456 1 300
3m2p-assembly3.cif.gz_D the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.7846 1 301
1z0s-assembly1.cif.gz_B crystal structure of an nad kinase from archaeoglobus fulgidus in complex with atp 0.7816 1 56
ID Description Score Start End Superfamily
af_P9WGP7_2_287_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8787 2 289 3.40.50.720
af_P9WGP7_2_287_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8642 2 289 3.40.50.720
af_A0A1D6IP12_4_87_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.853 1 31 3.40.50.20
af_P77775_2_297_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.851 3 299 3.40.50.720
af_Q8T0N5_9_300_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8472 3 300 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2P9ILT9-F1-model_v4 deleted 0.9619 1 301
AF-A0A5M3WKU1-F1-model_v4 NAD-dependent epimerase 0.9615 2 301
AF-A0A1C5JC65-F1-model_v4 DUF1731 domain-containing protein 0.9589 1 301
AF-A0A0F7G112-F1-model_v4 Nad-dependent epimerase 0.958 1 301
AF-A0A2P9ILT9-F1-model_v4 deleted 0.9557 1 301

Feature Viewer

pLDDT pTM Quality
84.31 0.88 High
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Predicted Structure (AlphaFold2)

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