F228264

General Info

Members Datasets Scaffolds Average Seq Length
157 122 127 510

Family's Representative Sequence

Representative Sequence 3300049570|Ga0501033_0034880|Ga0501033_0034880_2020_3669
Length 549
Sequence VPFAYFTDPHTRSQNQIIAIQEIMKTLHDESIGVIGAGLGGLAAACTLAARGYKVILFESNDWIGGKAAQLEGGGFRFDMGPTIVTIPSVLRRVFSEAGRRMEDYLEMVRLDPQWRCFFEDGSVLNLREDPRQMALELGKFAPDTNSGERYLDFIKLSARLNDISQRYFFYKPIGGLRDMFDFRSSMDPKVLGDVLAMRMGLSVAGTVRSFTPDTRVAQMMDHFTQYVGSSPYGSPAVLCGIAHMQTDEGIWYPMGGTRAVPVALEKLARELGVEIRARTHITQIVTRGDEVTGVRTQHGEEIPLRAIVSNCDAVRTHRELINGAAGARFERRRHYEPACSGVVLYLGLKKRYEHLAHHDFVFSRDPKEEFDWIYNRGEPAPDPTCYLAATTCSEPATAPTGGEALYVLVHTPYLRAHHDWKRILPEYRRVIIEKLKRTGQMPDIEERIVFERILTPQDIHERYHVLNGAIYGLASHGRFLGAFKPGNRSRDLRGLYLAGGAAHPGPGMPMVLMSGWIAADTLDRDGIAERAVVGNQRPERLQAEPVEA

Samples

Sample ID Description Type Environment
1 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
2 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
3 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
4 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
5 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
6 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
7 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
8 2687453257 Planctomyces sp. SH-PL62 Isolate Unclassified
9 2687453341 Pirellula sp. SH-Sr6A Isolate Unclassified
10 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
11 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
12 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
13 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
14 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
15 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
16 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
17 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
18 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
19 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
20 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
21 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
22 2889415604 Paludisphaera rhizosphaerae JC665 Isolate Rhizosphere
23 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
24 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
25 2902330777 Methylobacterium sp. 2A Isolate Unclassified
26 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
27 2920107658 Aquisphaera insulae JC669 Isolate Rhizosphere
28 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
29 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
30 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
31 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
32 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
33 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
34 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
35 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
36 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
37 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
38 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
39 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
40 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
41 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
42 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
43 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
44 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
45 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
46 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
47 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
48 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
49 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
50 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
54 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
55 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
69 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
70 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
73 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
76 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
77 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
78 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
79 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
80 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
83 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
84 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
88 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
89 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
90 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
91 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
94 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
95 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
96 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
97 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
98 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
99 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
100 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
101 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
111 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
112 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
117 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
118 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
119 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
120 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
121 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
122 641522639 Methylobacterium sp. 4-46 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 80.89
Metatranscriptomes 0
Isolates 19.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.91
Nodule 3.82
Rhizoplane 0
Rhizosphere 71.97
Stem 0
Stem Tuber 0
Unclassified 22.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10011312 3300003320 Bacteria 5720
2 rootH2_10112924 3300003320 Bacteria 4791
3 Ga0070658_10058963 3300005327 Bacteria 3126
4 Ga0070666_10007015 3300005335 Bacteria 6945
5 Ga0070689_100007463 3300005340 Bacteria 7647
6 Ga0070668_100088040 3300005347 Bacteria 2444
7 Ga0070669_100000179 3300005353 Bacteria 55254
8 Ga0070674_100031693 3300005356 Bacteria 3505
9 Ga0070706_100064895 3300005467 Bacteria 3376
10 Ga0070698_100016022 3300005471 Bacteria 7915
11 Ga0070698_100050994 3300005471 Bacteria 4216
12 Ga0070699_100040886 3300005518 Bacteria 4013
13 Ga0070679_100002043 3300005530 Bacteria 18115
14 Ga0068853_100000046 3300005539 Bacteria 96446
15 Ga0070665_100000050 3300005548 Bacteria 250991
16 Ga0070665_100000438 3300005548 Bacteria 60778
17 Ga0081455_10024613 3300005937 Bacteria 5570
18 Ga0081538_10052332 3300005981 Bacteria 2441
19 Ga0075431_100003492 3300006847 Bacteria 15238
20 Ga0075433_10055206 3300006852 Bacteria 3467
21 Ga0075434_100025138 3300006871 Bacteria 5826
22 Ga0075429_100012548 3300006880 Bacteria 7351
23 Ga0075435_100005706 3300007076 Bacteria 8725
24 Ga0105245_10066299 3300009098 Bacteria 3267
25 Ga0105248_10007537 3300009177 Bacteria 11949
26 Ga0163163_10000327 3300014325 Bacteria 46030
27 Ga0213876_10031277 3300021384 Unclassified 2809
28 Ga0209233_1015204 3300025261 Bacteria 2151
29 Ga0209564_1001435 3300025295 Bacteria 24459
30 Ga0207652_10000998 3300025921 Bacteria 26124
31 Ga0207646_10101770 3300025922 Bacteria 2576
32 Ga0207681_10000044 3300025923 Bacteria 128566
33 Ga0207644_10021082 3300025931 Bacteria 4437
34 Ga0207670_10015726 3300025936 Unclassified 4529
35 Ga0207704_10128062 3300025938 Bacteria 1752
36 Ga0207691_10000608 3300025940 Bacteria 35619
37 Ga0207658_10075493 3300025986 Bacteria 2565
38 Ga0207639_10000021 3300026041 Bacteria 233661
39 Ga0207648_10167478 3300026089 Bacteria 1942
40 Ga0268266_10000161 3300028379 Bacteria 125387
41 Ga0268266_10000241 3300028379 Bacteria 92939
42 Ga0268266_10005996 3300028379 Bacteria 11216
43 Ga0265338_10115436 3300028800 Bacteria 2152
44 Ga0265328_10006046 3300031239 Bacteria 5152
45 Ga0265320_10001419 3300031240 Bacteria 17414
46 Ga0265329_10003137 3300031242 Bacteria 7279
47 Ga0265327_10002303 3300031251 Bacteria 20409
48 Ga0265327_10014135 3300031251 Bacteria 5241
49 Ga0265316_10137896 3300031344 Bacteria 1835
50 Ga0265314_10000380 3300031711 Bacteria 60805
51 Ga0265314_10002951 3300031711 Bacteria 16848
52 Ga0265314_10039047 3300031711 Unclassified 3423
53 Ga0307405_10106955 3300031731 Bacteria 1888
54 Ga0307405_10118997 3300031731 Bacteria 1804
55 Ga0307413_10040657 3300031824 Bacteria 2715
56 Ga0307410_10007183 3300031852 Bacteria 6077
57 Ga0307407_10097363 3300031903 Bacteria 1818
58 Ga0307412_10061640 3300031911 Bacteria 2522
59 Ga0307409_100044119 3300031995 Bacteria 3355
60 Ga0307416_100089390 3300032002 Unclassified 2637
61 Ga0307411_10038956 3300032005 Bacteria 3003
62 Ga0373929_0000003 3300035085 Bacteria 575058
63 Ga0373961_0001646 3300035241 Bacteria 6262
64 Ga0373947_0088753 3300035725 Bacteria 1925
65 Ga0395898_0116271 3300037466 Bacteria 2563
66 Ga0395905_0110727 3300037471 Unclassified 2579
67 Ga0436364_0138257 3300037853 Bacteria 2275
68 Ga0436364_0754411 3300037853 Bacteria 1851
69 Ga0436364_0809431 3300037853 Bacteria 5643
70 Ga0436364_0881717 3300037853 Bacteria 2631
71 Ga0436364_0948482 3300037853 Bacteria 25013
72 Ga0436364_0992200 3300037853 Bacteria 14385
73 Ga0436364_1247681 3300037853 Bacteria 3256
74 Ga0436364_1326995 3300037853 Bacteria 2505
75 Ga0436364_1435110 3300037853 Bacteria 7795
76 Ga0436365_0096130 3300039437 Bacteria 2132
77 Ga0436365_0111594 3300039437 Unclassified 3632
78 Ga0436365_1458710 3300039437 Bacteria 5176
79 Ga0436360_0286559 3300039438 Bacteria 5437
80 Ga0436360_1093118 3300039438 Bacteria 27396
81 Ga0436360_1296247 3300039438 Bacteria 2349
82 Ga0436363_0380932 3300039450 Bacteria 4282
83 Ga0436363_1170413 3300039450 Bacteria 3590
84 Ga0436363_1307632 3300039450 Bacteria 2417
85 Ga0436362_0289122 3300039453 Unclassified 4736
86 Ga0451577_0004625 3300042876 Bacteria 14456
87 Ga0451577_0007032 3300042876 Bacteria 11100
88 Ga0451577_0016344 3300042876 Bacteria 6875
89 Ga0451577_0023562 3300042876 Bacteria 5612
90 Ga0451577_0055068 3300042876 Bacteria 3550
91 Ga0451577_0191817 3300042876 Bacteria 1843
92 Ga0453684_0006312 3300044712 Bacteria 22631
93 Ga0453684_0231309 3300044712 Bacteria 2134
94 Ga0451576_0003450 3300045051 Bacteria 21681
95 Ga0495643_0000541 3300046522 Bacteria 46840
96 Ga0495586_0021018 3300046535 Bacteria 3479
97 Ga0495668_0005538 3300046616 Bacteria 8512
98 Ga0495658_0022499 3300046683 Bacteria 3334
99 Ga0495686_0000597 3300047472 Bacteria 50369
100 Ga0495686_0003213 3300047472 Bacteria 14392
101 Ga0495686_0055079 3300047472 Bacteria 2489
102 Ga0496126_0002890 3300048929 Bacteria 22404
103 Ga0501031_0008647 3300049568 Bacteria 6620
104 Ga0501033_0034880 3300049570 Bacteria 3771
105 Ga0501034_0007418 3300049571 Bacteria 11673
106 Ga0501034_0022676 3300049571 Bacteria 6395
107 Ga0501034_0163980 3300049571 Bacteria 2192
108 Ga0501036_0024676 3300049572 Bacteria 5069
109 Ga0501037_0012826 3300049573 Bacteria 6176
110 Ga0501039_0001138 3300049575 Bacteria 19609
111 Ga0501039_0079598 3300049575 Bacteria 2549
112 Ga0501041_0027832 3300049577 Unclassified 3408
113 Ga0501042_0007740 3300049578 Bacteria 7058
114 Ga0501046_0009178 3300049580 Bacteria 8567
115 Ga0501046_0090701 3300049580 Bacteria 2351
116 Ga0501071_0139542 3300049587 Bacteria 1804
117 Ga0501072_0096792 3300049588 Bacteria 2345
118 Ga0501076_0098616 3300049592 Bacteria 2354
119 Ga0501080_0087611 3300049742 Bacteria 2892
120 Ga0501081_0087838 3300049743 Bacteria 2184
121 Ga0501044_0040466 3300049823 Bacteria 4858
122 nmdc:mga09592_148230_c1 3300050508 Bacteria 2024
123 nmdc:mga0n895_125358_c1 3300050512 Bacteria 2592
124 nmdc:mga0rr50_86025_c1 3300050513 Bacteria 2438
125 nmdc:mga0a205_40724_c1 3300050515 Bacteria 4473
126 Ga0500559_0001335 3300053136 Bacteria 14193
127 Ga0530510_0025324 3300061734 Bacteria 4241

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026089 Ga0207648_10167478 Ga0207648_101674781 433
2 3300039438 Ga0436360_1296247 Ga0436360_1296247_282_1661 444
3 3300037853 Ga0436364_1435110 Ga0436364_1435110_18_1388 456
4 3300039453 Ga0436362_0289122 Ga0436362_0289122_3347_4726 459
5 iso_pu_bacteria 2928125067 2928125362 473
6 3300049587 Ga0501071_0139542 Ga0501071_0139542_18_1457 476
7 3300032002 Ga0307416_100089390 Ga0307416_1000893901 484
8 3300037853 Ga0436364_0138257 Ga0436364_0138257_792_2252 484
9 3300031731 Ga0307405_10106955 Ga0307405_101069551 485
10 3300005937 Ga0081455_10024613 Ga0081455_100246135 488
11 3300037853 Ga0436364_0992200 Ga0436364_0992200_33_1502 488
12 3300049580 Ga0501046_0090701 Ga0501046_0090701_156_1739 488
13 3300005467 Ga0070706_100064895 Ga0070706_1000648953 489
14 3300005471 Ga0070698_100016022 Ga0070698_1000160228 489
15 3300005471 Ga0070698_100050994 Ga0070698_1000509942 489
16 3300005518 Ga0070699_100040886 Ga0070699_1000408864 489
17 3300006847 Ga0075431_100003492 Ga0075431_1000034925 489
18 3300006852 Ga0075433_10055206 Ga0075433_100552063 489
19 3300006871 Ga0075434_100025138 Ga0075434_1000251382 489
20 3300006880 Ga0075429_100012548 Ga0075429_1000125483 489
21 3300007076 Ga0075435_100005706 Ga0075435_1000057064 489
22 3300025922 Ga0207646_10101770 Ga0207646_101017702 489
23 3300035725 Ga0373947_0088753 Ga0373947_0088753_411_1892 489
24 3300050508 nmdc:mga09592_148230_c1 nmdc:mga09592_148230_c1_280_1761 489
25 3300050512 nmdc:mga0n895_125358_c1 nmdc:mga0n895_125358_c1_928_2409 489
26 3300050513 nmdc:mga0rr50_86025_c1 nmdc:mga0rr50_86025_c1_584_2065 489
27 3300050515 nmdc:mga0a205_40724_c1 nmdc:mga0a205_40724_c1_1968_3449 489
28 3300046616 Ga0495668_0005538 Ga0495668_0005538_5167_6675 491
29 3300005340 Ga0070689_100007463 Ga0070689_1000074633 492
30 3300025936 Ga0207670_10015726 Ga0207670_100157262 492
31 3300035085 Ga0373929_0000003 Ga0373929_0000003_440798_442354 492
32 3300009098 Ga0105245_10066299 Ga0105245_100662993 494
33 3300037466 Ga0395898_0116271 Ga0395898_0116271_376_1905 494
34 iso_pu_bacteria 2595698237 2596375879 496
35 3300047472 Ga0495686_0003213 Ga0495686_0003213_3123_4637 499
36 3300005353 Ga0070669_100000179 Ga0070669_10000017915 501
37 3300005530 Ga0070679_100002043 Ga0070679_1000020438 501
38 3300005548 Ga0070665_100000438 Ga0070665_1000004387 501
39 3300025261 Ga0209233_1015204 Ga0209233_10152042 501
40 3300025921 Ga0207652_10000998 Ga0207652_100009988 501
41 3300025923 Ga0207681_10000044 Ga0207681_1000004469 501
42 3300028379 Ga0268266_10000161 Ga0268266_1000016192 501
43 3300031711 Ga0265314_10002951 Ga0265314_100029514 501
44 3300039438 Ga0436360_0286559 Ga0436360_0286559_1213_2718 501
45 3300042876 Ga0451577_0023562 Ga0451577_0023562_2453_3967 502
46 3300049571 Ga0501034_0007418 Ga0501034_0007418_425_1975 502
47 iso_pu_bacteria 2889306138 2889310267 502
48 iso_pu_bacteria 2902330777 2902334517 502
49 iso_pu_bacteria 2902405164 2902408419 502
50 3300037853 Ga0436364_0948482 Ga0436364_0948482_10797_12311 503
51 3300039437 Ga0436365_0096130 Ga0436365_0096130_141_1667 503
52 3300039450 Ga0436363_1307632 Ga0436363_1307632_544_2070 503
53 3300049575 Ga0501039_0079598 Ga0501039_0079598_213_1739 503
54 3300049588 Ga0501072_0096792 Ga0501072_0096792_505_2031 503
55 3300049743 Ga0501081_0087838 Ga0501081_0087838_53_1579 503
56 iso_pu_bacteria 2545555834 2545678278 503
57 iso_pu_bacteria 641522639 641643344 503
58 3300025295 Ga0209564_1001435 Ga0209564_10014352 504
59 iso_pu_bacteria 3003665799 3003668260 504
60 3300005347 Ga0070668_100088040 Ga0070668_1000880401 505
61 3300047472 Ga0495686_0055079 Ga0495686_0055079_211_1740 505
62 iso_pu_bacteria 2508501114 2509079206 505
63 iso_pu_bacteria 2835312727 2835315609 505
64 iso_pu_bacteria 2894232714 2894232941 505
65 3300031731 Ga0307405_10118997 Ga0307405_101189972 506
66 3300031824 Ga0307413_10040657 Ga0307413_100406572 506
67 3300031903 Ga0307407_10097363 Ga0307407_100973631 506
68 3300031911 Ga0307412_10061640 Ga0307412_100616402 506
69 3300031995 Ga0307409_100044119 Ga0307409_1000441192 506
70 3300032005 Ga0307411_10038956 Ga0307411_100389562 506
71 3300035241 Ga0373961_0001646 Ga0373961_0001646_4333_5862 506
72 iso_pu_bacteria 2775506901 2776264378 506
73 iso_pu_bacteria 2829745981 2829748085 506
74 iso_pu_bacteria 2861691609 2861695074 506
75 3300005356 Ga0070674_100031693 Ga0070674_1000316932 507
76 3300005539 Ga0068853_100000046 Ga0068853_10000004628 507
77 3300025931 Ga0207644_10021082 Ga0207644_100210822 507
78 3300025938 Ga0207704_10128062 Ga0207704_101280622 507
79 3300025940 Ga0207691_10000608 Ga0207691_100006082 507
80 3300025986 Ga0207658_10075493 Ga0207658_100754932 507
81 3300026041 Ga0207639_10000021 Ga0207639_10000021120 507
82 3300028379 Ga0268266_10005996 Ga0268266_100059962 507
83 3300039450 Ga0436363_0380932 Ga0436363_0380932_2352_3875 507
84 3300046683 Ga0495658_0022499 Ga0495658_0022499_918_2456 507
85 3300047472 Ga0495686_0000597 Ga0495686_0000597_43837_45366 507
86 iso_pu_bacteria 2511231221 2512036473 507
87 iso_pu_bacteria 2597490356 2599101640 507
88 iso_pu_bacteria 2842698319 2842702138 507
89 iso_pu_bacteria 2846952575 2846957781 507
90 iso_pu_bacteria 2848858292 2848858505 507
91 3300021384 Ga0213876_10031277 Ga0213876_100312772 508
92 3300037471 Ga0395905_0110727 Ga0395905_0110727_111_1655 508
93 3300037853 Ga0436364_1326995 Ga0436364_1326995_406_1965 508
94 3300039437 Ga0436365_0111594 Ga0436365_0111594_1586_3124 508
95 3300039438 Ga0436360_1093118 Ga0436360_1093118_24474_26012 508
96 3300046522 Ga0495643_0000541 Ga0495643_0000541_10393_11928 508
97 iso_pu_bacteria 2687453341 2688394885 508
98 3300037853 Ga0436364_0754411 Ga0436364_0754411_74_1618 509
99 3300037853 Ga0436364_0881717 Ga0436364_0881717_682_2226 509
100 3300049568 Ga0501031_0008647 Ga0501031_0008647_1684_3225 509
101 3300049572 Ga0501036_0024676 Ga0501036_0024676_3135_4676 509
102 3300049573 Ga0501037_0012826 Ga0501037_0012826_2527_4068 509
103 3300049575 Ga0501039_0001138 Ga0501039_0001138_17710_19251 509
104 3300049577 Ga0501041_0027832 Ga0501041_0027832_989_2530 509
105 3300049578 Ga0501042_0007740 Ga0501042_0007740_3335_4876 509
106 3300049580 Ga0501046_0009178 Ga0501046_0009178_3313_4854 509
107 3300053136 Ga0500559_0001335 Ga0500559_0001335_2115_3650 509
108 iso_pu_bacteria 2738541281 2738746616 509
109 iso_pu_bacteria 2738543032 2739355846 509
110 3300005327 Ga0070658_10058963 Ga0070658_100589632 510
111 3300005335 Ga0070666_10007015 Ga0070666_100070152 510
112 3300037853 Ga0436364_0809431 Ga0436364_0809431_510_2054 510
113 3300039437 Ga0436365_1458710 Ga0436365_1458710_722_2281 510
114 3300049571 Ga0501034_0022676 Ga0501034_0022676_4055_5611 510
115 3300037853 Ga0436364_1247681 Ga0436364_1247681_836_2371 511
116 3300039450 Ga0436363_1170413 Ga0436363_1170413_1953_3488 511
117 3300045051 Ga0451576_0003450 Ga0451576_0003450_2876_4450 511
118 3300049571 Ga0501034_0163980 Ga0501034_0163980_240_1778 511
119 3300042876 Ga0451577_0016344 Ga0451577_0016344_1689_3245 512
120 3300049592 Ga0501076_0098616 Ga0501076_0098616_352_1896 512
121 3300049742 Ga0501080_0087611 Ga0501080_0087611_93_1637 512
122 iso_pu_bacteria 2894772417 2894775632 512
123 3300061734 Ga0530510_0025324 Ga0530510_0025324_2292_3854 513
124 iso_pu_bacteria 2684623219 2687237857 513
125 iso_pu_bacteria 2883577096 2883579086 513
126 iso_pu_bacteria 2889415604 2889416463 513
127 iso_pu_bacteria 2920107658 2920108929 513
128 3300031251 Ga0265327_10002303 Ga0265327_100023036 514
129 3300031852 Ga0307410_10007183 Ga0307410_100071835 515
130 3300005548 Ga0070665_100000050 Ga0070665_100000050141 516
131 3300005981 Ga0081538_10052332 Ga0081538_100523321 516
132 3300009177 Ga0105248_10007537 Ga0105248_100075372 516
133 3300028379 Ga0268266_10000241 Ga0268266_1000024172 516
134 3300031711 Ga0265314_10039047 Ga0265314_100390473 516
135 3300042876 Ga0451577_0004625 Ga0451577_0004625_5821_7404 516
136 3300044712 Ga0453684_0006312 Ga0453684_0006312_4957_6540 516
137 3300046535 Ga0495586_0021018 Ga0495586_0021018_807_2378 516
138 3300048929 Ga0496126_0002890 Ga0496126_0002890_15749_17299 516
139 iso_pu_bacteria 2687453257 2688069003 516
140 3300003320 rootH2_10112924 rootH2_101129242 517
141 3300042876 Ga0451577_0191817 Ga0451577_0191817_73_1671 517
142 3300003320 rootH2_10011312 rootH2_100113122 518
143 3300014325 Ga0163163_10000327 Ga0163163_1000032733 518
144 3300028800 Ga0265338_10115436 Ga0265338_101154362 518
145 3300031239 Ga0265328_10006046 Ga0265328_100060463 518
146 3300031240 Ga0265320_10001419 Ga0265320_1000141912 518
147 3300031242 Ga0265329_10003137 Ga0265329_100031373 518
148 3300031251 Ga0265327_10014135 Ga0265327_100141354 518
149 3300031344 Ga0265316_10137896 Ga0265316_101378962 518
150 3300031711 Ga0265314_10000380 Ga0265314_1000038012 518
151 3300042876 Ga0451577_0007032 Ga0451577_0007032_9127_10710 518
152 3300042876 Ga0451577_0055068 Ga0451577_0055068_1701_3281 518
153 3300044712 Ga0453684_0231309 Ga0453684_0231309_269_1849 518
154 3300049570 Ga0501033_0034880 Ga0501033_0034880_2020_3669 518
155 3300049823 Ga0501044_0040466 Ga0501044_0040466_743_2347 518
156 iso_pu_bacteria 2671180531 2673165191 518
157 iso_pu_bacteria 2842333319 2842338296 518

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

34

98

0.91

PF00890

FAD_binding_2

FAD binding domain

32

82

0.85

PF01266

DAO

FAD dependent oxidoreductase

31

160

0.81

PF01593

Amino_oxidase

Flavin containing amine oxidoreductase

39

523

0.77

PF12831

FAD_oxidored

FAD dependent oxidoreductase

32

129

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
8ajj-assembly3.cif.gz_B-2 crystal structure of the disulfide reductase mera from staphylococcus aureus 0.9864 3 37
4xr9-assembly1.cif.gz_B crystal structure of cals8 from micromonospora echinospora cocrystallized with nad and tdp-glucose 0.9859 1 35
4xrr-assembly1.cif.gz_B crystal structure of cals8 from micromonospora echinospora (p294s mutant) 0.9855 1 35
4xrr-assembly1.cif.gz_A crystal structure of cals8 from micromonospora echinospora (p294s mutant) 0.9853 1 35
8ajj-assembly1.cif.gz_D crystal structure of the disulfide reductase mera from staphylococcus aureus 0.9813 3 37
ID Description Score Start End Superfamily
2eq6B02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 1.002 3 35 3.50.50.60
af_I6Y4U4_173_293_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 1.001 3 37 3.50.50.60
af_P76440_125_245_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9977 4 39 3.50.50.60
af_Q2FY51_163_282_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9949 3 37 3.50.50.60
af_P9WN19_146_269_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9931 5 39 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A225DC37-F1-model_v4 Phytoene desaturase, neurosporene or lycopene producing 0.9855 2 498 GO:0016117
GO:0016491
AF-A0A3C1X496-F1-model_v4 Phytoene desaturase 0.9784 220 500 GO:0016491
AF-A0A3L7VP39-F1-model_v4 Phytoene desaturase 0.9755 128 497 GO:0016117
GO:0016491
AF-A0A352Y279-F1-model_v4 Phytoene desaturase 0.9611 1 125
AF-A0A1Q6DXG7-F1-model_v4 Phytoene dehydrogenase family enzyme 0.9606 58 499 GO:0016117
GO:0016491

Feature Viewer

pLDDT pTM Quality
90.79 0.9 High
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Predicted Structure (AlphaFold2)

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