F227942

General Info

Members Datasets Scaffolds Average Seq Length
157 102 123 549

Family's Representative Sequence

Representative Sequence 3300044673|Ga0453683_0001491|Ga0453683_0001491_7501_9270
Length 589
Sequence MKKIRSGRVVIFLIILLTAGTLTTGFLASQETRDFKLAKNLDIFFTLFRELNTFYVDEINPDKLIKTGIDNMLKTLDPYTVYFPETEADEFKILTTGKYGGIGSLIRGGGDYSVISEVYKGFPADKAGIKAGDILKKVDDVSIKGLTTDKVSEKLKGDPGTPIKVTIERNGAETVYSLKREKIAIPAVPYYGMIDSKTGYISFRTFSQDCIDEVKSALVDLKKNNPQQIILDLRGNPGGLLTEAVEIVNLFVGQGNEVVSTKGKVKQFDEVYKTTKPAVDDKIELAVLINRGSASASEIVAGAIQDLDRGVIIGQRSYGKGLVQITRPLSYNTELKVTTAKYYIPSGRCIQALDFSHPNEDGSVGIIPDSLISEFKTKNGRTVKNGGGITPDIEVTPASLSQITGELYLRNYIFDYATQYYWSHPVISSPDQFNFSDKDYSDFGTMLVSRKFSYKTATEESLNELITNAKKEKYYDMHKAVFDTLQKEVAHSLQEDLRLFRPEITELIEDEIISRYFYEQGAVAWSIKKDEQVQKALEVLNNKNQYTLILQGKSGSIQVSTRDDNQGVKGNRKNKDFTLESQKTETRHI

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
3 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
4 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
5 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
6 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
7 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
8 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
9 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
10 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
11 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
12 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
13 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
14 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
15 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
16 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
17 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
18 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
19 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
20 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
21 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
22 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
23 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
24 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
25 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
26 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
27 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
28 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
29 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
30 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
31 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
32 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
33 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
34 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
35 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
36 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
37 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
38 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
41 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
42 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
43 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
47 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
48 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
52 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
53 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
60 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
61 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
62 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
66 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
71 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
72 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
73 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
74 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
75 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
76 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
77 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
80 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
86 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
87 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
88 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
89 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
90 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
92 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
93 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
94 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
97 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
98 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
99 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
100 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
101 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
102 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.71
Metatranscriptomes 0.64
Isolates 21.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.46
Nodule 3.82
Rhizoplane 0
Rhizosphere 73.89
Stem 0
Stem Tuber 0
Unclassified 17.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_940801 2162886007 Bacteria 3148
2 rootH2_10324283 3300003320 Bacteria 1953
3 rootL2_10238719 3300003322 Bacteria 4006
4 Ga0006562J51391_1025394 3300003578 Bacteria 3647
5 Ga0065165_1000302 3300005262 Bacteria 82711
6 Ga0065714_10075410 3300005288 Bacteria 2911
7 Ga0065714_10075600 3300005288 Bacteria 2889
8 Ga0065704_10070495 3300005289 Bacteria 22537
9 Ga0065715_10136031 3300005293 Bacteria 1929
10 Ga0068860_100036972 3300005843 Bacteria 4675
11 Ga0099824_1006290 3300006942 Bacteria 16353
12 Ga0079104_1000146 3300006946 Bacteria 99148
13 Ga0099826_10001850 3300006948 Bacteria 13169
14 Ga0105244_10000112 3300009036 Bacteria 84783
15 Ga0105242_10160540 3300009176 Unclassified 1967
16 Ga0157373_10000023 3300013100 Bacteria 164200
17 Ga0157371_10014942 3300013102 Bacteria 5842
18 Ga0157371_10029665 3300013102 Bacteria 3953
19 Ga0157370_10001180 3300013104 Bacteria 32585
20 Ga0157370_10004171 3300013104 Bacteria 16720
21 Ga0157370_10036746 3300013104 Bacteria 4751
22 Ga0157370_10179124 3300013104 Bacteria 1970
23 Ga0157369_10004362 3300013105 Bacteria 16694
24 Ga0157372_10000437 3300013307 Bacteria 45952
25 Ga0157375_10079411 3300013308 Bacteria 3317
26 Ga0163163_10077473 3300014325 Bacteria 3320
27 Ga0157380_10000002 3300014326 Bacteria 236273
28 Ga0182006_1002089 3300015261 Bacteria 11167
29 Ga0182006_1003611 3300015261 Bacteria 7858
30 Ga0163161_10000449 3300017792 Bacteria 34233
31 Ga0209676_1000363 3300025292 Bacteria 85613
32 Ga0209050_1025483 3300025298 Bacteria 2008
33 Ga0207655_1000003 3300025728 Bacteria 1081376
34 Ga0207702_10097073 3300026078 Bacteria 2593
35 Ga0209281_1000045 3300027111 Bacteria 328124
36 Ga0209489_114771 3300027361 Bacteria 5236
37 Ga0209282_1002925 3300027666 Bacteria 10036
38 Ga0265323_10003211 3300028653 Bacteria 7281
39 Ga0307515_10000411 3300028794 Bacteria 103597
40 Ga0307515_10061512 3300028794 Bacteria 5325
41 Ga0307515_10068969 3300028794 Bacteria 4845
42 Ga0265338_10014843 3300028800 Bacteria 8618
43 Ga0265327_10012209 3300031251 Bacteria 5824
44 Ga0265327_10024109 3300031251 Bacteria 3584
45 Ga0265316_10007452 3300031344 Bacteria 10314
46 Ga0307408_100001002 3300031548 Bacteria 21805
47 Ga0265314_10018917 3300031711 Bacteria 5346
48 Ga0307405_10000001 3300031731 Bacteria 1731270
49 Ga0307413_10000012 3300031824 Bacteria 51136
50 Ga0307413_10024706 3300031824 Bacteria 3281
51 Ga0307410_10001647 3300031852 Bacteria 10274
52 Ga0307406_10000062 3300031901 Bacteria 60112
53 Ga0307407_10003223 3300031903 Bacteria 6628
54 Ga0307416_100000604 3300032002 Bacteria 18489
55 Ga0307414_10000027 3300032004 Bacteria 192277
56 Ga0307414_10034343 3300032004 Bacteria 3361
57 Ga0307411_10000003 3300032005 Bacteria 477556
58 Ga0307510_10002290 3300033180 Bacteria 21613
59 Ga0395905_0000001 3300037471 Bacteria 2037079
60 Ga0439447_000028 3300041407 Bacteria 50373
61 Ga0439466_0000467 3300041411 Bacteria 15400
62 Ga0439466_0006076 3300041411 Bacteria 4598
63 Ga0451577_0000048 3300042876 Bacteria 309377
64 Ga0451577_0000103 3300042876 Bacteria 186594
65 Ga0451577_0000230 3300042876 Bacteria 113101
66 Ga0451577_0002917 3300042876 Bacteria 19613
67 Ga0451577_0010387 3300042876 Bacteria 8905
68 Ga0451577_0010543 3300042876 Bacteria 8817
69 Ga0451577_0011561 3300042876 Bacteria 8343
70 Ga0451577_0048838 3300042876 Bacteria 3779
71 Ga0451577_0060087 3300042876 Bacteria 3389
72 Ga0451577_0245804 3300042876 Bacteria 1619
73 Ga0453683_0000042 3300044673 Bacteria 217883
74 Ga0453683_0000190 3300044673 Bacteria 85362
75 Ga0453683_0000325 3300044673 Bacteria 58597
76 Ga0453683_0001491 3300044673 Bacteria 20041
77 Ga0453683_0010320 3300044673 Bacteria 6189
78 Ga0453683_0033002 3300044673 Bacteria 3265
79 Ga0453683_0037516 3300044673 Bacteria 3048
80 Ga0453683_0047732 3300044673 Unclassified 2685
81 Ga0453684_0000161 3300044712 Bacteria 298175
82 Ga0453684_0000225 3300044712 Bacteria 245902
83 Ga0453684_0000388 3300044712 Bacteria 180685
84 Ga0453684_0000570 3300044712 Bacteria 137760
85 Ga0453684_0000759 3300044712 Bacteria 112043
86 Ga0453684_0001471 3300044712 Bacteria 66489
87 Ga0453684_0003727 3300044712 Bacteria 33740
88 Ga0453684_0004621 3300044712 Bacteria 28641
89 Ga0453684_0005166 3300044712 Bacteria 26255
90 Ga0453684_0012572 3300044712 Bacteria 13933
91 Ga0453684_0021228 3300044712 Bacteria 9718
92 Ga0453684_0050810 3300044712 Bacteria 5447
93 Ga0453684_0068337 3300044712 Bacteria 4513
94 Ga0453684_0104804 3300044712 Bacteria 3451
95 Ga0453684_0125812 3300044712 Bacteria 3085
96 Ga0453684_0151552 3300044712 Bacteria 2754
97 Ga0453684_0259560 3300044712 Bacteria 1991
98 Ga0451576_0000002 3300045051 Bacteria 1670975
99 Ga0451576_0000059 3300045051 Bacteria 296795
100 Ga0451576_0000095 3300045051 Bacteria 223485
101 Ga0451576_0000346 3300045051 Bacteria 112037
102 Ga0451576_0000350 3300045051 Bacteria 110906
103 Ga0451576_0000371 3300045051 Bacteria 106687
104 Ga0451576_0001015 3300045051 Bacteria 51898
105 Ga0451576_0003588 3300045051 Bacteria 21102
106 Ga0451576_0004791 3300045051 Bacteria 17342
107 Ga0451576_0013169 3300045051 Bacteria 9256
108 Ga0495654_0039285 3300046530 Bacteria 2363
109 Ga0496116_0001214 3300048919 Bacteria 30053
110 Ga0496121_0017991 3300048924 Bacteria 7161
111 Ga0496125_0000098 3300048928 Bacteria 204522
112 Ga0496126_0028174 3300048929 Bacteria 5355
113 Ga0501036_0026561 3300049572 Bacteria 4889
114 Ga0501238_000002 3300049671 Bacteria 47919
115 Ga0501249_000013 3300049679 Bacteria 138361
116 Ga0501249_005060 3300049679 Bacteria 2693
117 Ga0501266_000003 3300049763 Bacteria 388836
118 Ga0501280_000053 3300049776 Bacteria 33638
119 Ga0501035_0036588 3300049822 Bacteria 4449
120 Ga0500641_0000005 3300053096 Bacteria 226810
121 Ga0500641_0001205 3300053096 Bacteria 9220
122 Ga0500658_0000014 3300053134 Bacteria 153278
123 Ga0500559_0008660 3300053136 Bacteria 4446

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0050810 Ga0453684_0050810_4025_5437 441
2 3300042876 Ga0451577_0245804 Ga0451577_0245804_176_1585 457
3 3300042876 Ga0451577_0048838 Ga0451577_0048838_32_1507 479
4 3300042876 Ga0451577_0010543 Ga0451577_0010543_2776_4518 492
5 3300013307 Ga0157372_10000437 Ga0157372_100004376 500
6 3300031344 Ga0265316_10007452 Ga0265316_100074529 516
7 3300014325 Ga0163163_10077473 Ga0163163_100774732 519
8 3300005288 Ga0065714_10075600 Ga0065714_100756002 521
9 3300009176 Ga0105242_10160540 Ga0105242_101605401 521
10 3300044673 Ga0453683_0047732 Ga0453683_0047732_670_2415 523
11 3300044712 Ga0453684_0021228 Ga0453684_0021228_1624_3369 523
12 3300044712 Ga0453684_0068337 Ga0453684_0068337_229_1971 526
13 3300044712 Ga0453684_0151552 Ga0453684_0151552_672_2417 526
14 3300042876 Ga0451577_0011561 Ga0451577_0011561_3680_5365 528
15 3300044673 Ga0453683_0000325 Ga0453683_0000325_46986_48671 528
16 3300003320 rootH2_10324283 rootH2_103242832 530
17 3300044712 Ga0453684_0000388 Ga0453684_0000388_89248_90984 530
18 3300045051 Ga0451576_0013169 Ga0451576_0013169_2083_3819 530
19 3300003322 rootL2_10238719 rootL2_102387192 533
20 3300042876 Ga0451577_0000230 Ga0451577_0000230_18566_20260 533
21 3300044712 Ga0453684_0000759 Ga0453684_0000759_17508_19202 533
22 3300045051 Ga0451576_0000346 Ga0451576_0000346_17515_19209 533
23 3300045051 Ga0451576_0001015 Ga0451576_0001015_37126_38892 533
24 3300042876 Ga0451577_0010387 Ga0451577_0010387_4364_6046 535
25 3300044712 Ga0453684_0000225 Ga0453684_0000225_32771_34453 535
26 3300025298 Ga0209050_1025483 Ga0209050_10254832 536
27 3300031251 Ga0265327_10024109 Ga0265327_100241093 536
28 3300031251 Ga0265327_10012209 Ga0265327_100122094 537
29 3300045051 Ga0451576_0000371 Ga0451576_0000371_48961_50634 538
30 iso_pu_bacteria 2522125168 2522553688 538
31 3300028794 Ga0307515_10000411 Ga0307515_100004113 539
32 3300028794 Ga0307515_10061512 Ga0307515_100615123 539
33 iso_pu_bacteria 2881955468 2881956747 539
34 iso_pu_bacteria 2911138879 2911143725 540
35 iso_pu_bacteria 2513020052 2513234580 541
36 iso_pu_bacteria 2519899754 2520880383 541
37 iso_pu_bacteria 2643221600 2644012229 541
38 iso_pu_bacteria 2643221667 2644374469 541
39 iso_pu_bacteria 2643221716 2644641509 541
40 iso_pu_bacteria 2643221725 2644682382 541
41 iso_pu_bacteria 2738541279 2738735917 541
42 iso_pu_bacteria 2738541285 2738768494 541
43 iso_pu_bacteria 2738543007 2739217499 541
44 iso_pu_bacteria 2739367857 2740000458 541
45 iso_pu_bacteria 2739367858 2740005274 541
46 iso_pu_bacteria 2802428842 2802651153 541
47 iso_pu_bacteria 2816332280 2817414042 541
48 iso_pu_bacteria 2857613821 2857616232 541
49 iso_pu_bacteria 2857618242 2857622591 541
50 iso_pu_bacteria 2881359912 2881361341 541
51 iso_pu_bacteria 2903895155 2903896552 541
52 iso_pu_bacteria 2904419702 2904420482 541
53 iso_pu_bacteria 2904555929 2904557669 541
54 iso_pu_bacteria 2910245624 2910250185 541
55 iso_pu_bacteria 2919191525 2919195815 541
56 iso_pu_bacteria 2919509842 2919513158 541
57 iso_pu_bacteria 2919683626 2919686959 541
58 iso_pu_bacteria 2929150217 2929151184 541
59 iso_pu_bacteria 2958458903 2958461766 541
60 iso_pu_bacteria 2965320100 2965321150 541
61 iso_pu_bacteria 2977268062 2977272567 541
62 iso_pu_bacteria 8054307821 8054310965 541
63 iso_pu_bacteria 8055419101 8055420221 541
64 iso_pu_bacteria 8055592153 8055593085 541
65 iso_pu_bacteria 8056440228 8056442782 541
66 3300005262 Ga0065165_1000302 Ga0065165_100030233 542
67 3300013102 Ga0157371_10014942 Ga0157371_100149422 542
68 3300013104 Ga0157370_10179124 Ga0157370_101791241 542
69 3300025292 Ga0209676_1000363 Ga0209676_100036369 542
70 3300031711 Ga0265314_10018917 Ga0265314_100189172 542
71 3300032004 Ga0307414_10034343 Ga0307414_100343432 542
72 3300044712 Ga0453684_0012572 Ga0453684_0012572_3677_5350 542
73 3300028653 Ga0265323_10003211 Ga0265323_100032115 543
74 3300042876 Ga0451577_0000103 Ga0451577_0000103_14290_15963 543
75 3300005843 Ga0068860_100036972 Ga0068860_1000369722 544
76 3300013104 Ga0157370_10036746 Ga0157370_100367463 544
77 3300013308 Ga0157375_10079411 Ga0157375_100794112 544
78 3300026078 Ga0207702_10097073 Ga0207702_100970732 544
79 3300037471 Ga0395905_0000001 Ga0395905_0000001_1068589_1070304 544
80 3300044712 Ga0453684_0003727 Ga0453684_0003727_19687_21351 544
81 3300044712 Ga0453684_0005166 Ga0453684_0005166_16884_18548 544
82 3300045051 Ga0451576_0000002 Ga0451576_0000002_528159_529859 544
83 3300045051 Ga0451576_0003588 Ga0451576_0003588_11225_12961 544
84 2162886007 SwRhRL2b_contig_940801 SwRhRL2b_0761.00007920 545
85 3300003578 Ga0006562J51391_1025394 Ga0006562J51391_10253943 545
86 3300005288 Ga0065714_10075410 Ga0065714_100754102 545
87 3300005289 Ga0065704_10070495 Ga0065704_1007049515 545
88 3300005293 Ga0065715_10136031 Ga0065715_101360311 545
89 3300006942 Ga0099824_1006290 Ga0099824_10062906 545
90 3300006946 Ga0079104_1000146 Ga0079104_100014690 545
91 3300006948 Ga0099826_10001850 Ga0099826_100018505 545
92 3300009036 Ga0105244_10000112 Ga0105244_1000011257 545
93 3300013100 Ga0157373_10000023 Ga0157373_100000239 545
94 3300013102 Ga0157371_10029665 Ga0157371_100296652 545
95 3300013104 Ga0157370_10001180 Ga0157370_1000118017 545
96 3300013104 Ga0157370_10004171 Ga0157370_1000417116 545
97 3300013105 Ga0157369_10004362 Ga0157369_1000436210 545
98 3300014326 Ga0157380_10000002 Ga0157380_10000002170 545
99 3300015261 Ga0182006_1002089 Ga0182006_100208912 545
100 3300015261 Ga0182006_1003611 Ga0182006_10036115 545
101 3300017792 Ga0163161_10000449 Ga0163161_100004499 545
102 3300025728 Ga0207655_1000003 Ga0207655_1000003163 545
103 3300027111 Ga0209281_1000045 Ga0209281_1000045108 545
104 3300027361 Ga0209489_114771 Ga0209489_1147716 545
105 3300027666 Ga0209282_1002925 Ga0209282_10029255 545
106 3300028794 Ga0307515_10068969 Ga0307515_100689693 545
107 3300028800 Ga0265338_10014843 Ga0265338_100148433 545
108 3300031548 Ga0307408_100001002 Ga0307408_1000010028 545
109 3300031731 Ga0307405_10000001 Ga0307405_10000001157 545
110 3300031824 Ga0307413_10000012 Ga0307413_1000001247 545
111 3300031824 Ga0307413_10024706 Ga0307413_100247062 545
112 3300031852 Ga0307410_10001647 Ga0307410_100016476 545
113 3300031901 Ga0307406_10000062 Ga0307406_1000006255 545
114 3300031903 Ga0307407_10003223 Ga0307407_100032233 545
115 3300032002 Ga0307416_100000604 Ga0307416_1000006045 545
116 3300032004 Ga0307414_10000027 Ga0307414_10000027136 545
117 3300032005 Ga0307411_10000003 Ga0307411_10000003364 545
118 3300033180 Ga0307510_10002290 Ga0307510_1000229020 545
119 3300041407 Ga0439447_000028 Ga0439447_000028_31327_32964 545
120 3300041411 Ga0439466_0000467 Ga0439466_0000467_13753_15390 545
121 3300041411 Ga0439466_0006076 Ga0439466_0006076_1374_3011 545
122 3300042876 Ga0451577_0000048 Ga0451577_0000048_36256_37938 545
123 3300042876 Ga0451577_0002917 Ga0451577_0002917_14808_16523 545
124 3300042876 Ga0451577_0060087 Ga0451577_0060087_367_2049 545
125 3300044673 Ga0453683_0000042 Ga0453683_0000042_65614_67296 545
126 3300044673 Ga0453683_0000190 Ga0453683_0000190_58627_60309 545
127 3300044673 Ga0453683_0001491 Ga0453683_0001491_7501_9270 545
128 3300044673 Ga0453683_0010320 Ga0453683_0010320_827_2515 545
129 3300044673 Ga0453683_0033002 Ga0453683_0033002_1447_3216 545
130 3300044673 Ga0453683_0037516 Ga0453683_0037516_1298_2980 545
131 3300044712 Ga0453684_0000161 Ga0453684_0000161_25054_26736 545
132 3300044712 Ga0453684_0000570 Ga0453684_0000570_83460_85175 545
133 3300044712 Ga0453684_0001471 Ga0453684_0001471_64617_66299 545
134 3300044712 Ga0453684_0004621 Ga0453684_0004621_412_2121 545
135 3300044712 Ga0453684_0104804 Ga0453684_0104804_1153_2835 545
136 3300044712 Ga0453684_0125812 Ga0453684_0125812_249_1931 545
137 3300044712 Ga0453684_0259560 Ga0453684_0259560_12_1694 545
138 3300045051 Ga0451576_0000059 Ga0451576_0000059_271440_273122 545
139 3300045051 Ga0451576_0000095 Ga0451576_0000095_138313_140028 545
140 3300045051 Ga0451576_0000350 Ga0451576_0000350_21568_23337 545
141 3300045051 Ga0451576_0004791 Ga0451576_0004791_5201_6883 545
142 3300046530 Ga0495654_0039285 Ga0495654_0039285_130_1767 545
143 3300048919 Ga0496116_0001214 Ga0496116_0001214_14462_16099 545
144 3300048924 Ga0496121_0017991 Ga0496121_0017991_5181_6818 545
145 3300048928 Ga0496125_0000098 Ga0496125_0000098_12893_14530 545
146 3300048929 Ga0496126_0028174 Ga0496126_0028174_3590_5227 545
147 3300049572 Ga0501036_0026561 Ga0501036_0026561_1008_2648 545
148 3300049671 Ga0501238_000002 Ga0501238_000002_45204_46841 545
149 3300049679 Ga0501249_000013 Ga0501249_000013_121814_123451 545
150 3300049679 Ga0501249_005060 Ga0501249_005060_764_2401 545
151 3300049763 Ga0501266_000003 Ga0501266_000003_319232_320869 545
152 3300049776 Ga0501280_000053 Ga0501280_000053_30217_31854 545
153 3300049822 Ga0501035_0036588 Ga0501035_0036588_2507_4147 545
154 3300053096 Ga0500641_0000005 Ga0500641_0000005_85336_86973 545
155 3300053096 Ga0500641_0001205 Ga0500641_0001205_3435_5072 545
156 3300053134 Ga0500658_0000014 Ga0500658_0000014_12536_14173 545
157 3300053136 Ga0500559_0008660 Ga0500559_0008660_267_1904 545

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17820

PDZ_6

PDZ domain

114

169

0.98

PF03572

Peptidase_S41

Peptidase family S41

197

372

0.93

PF00595

PDZ

PDZ domain

92

168

0.89

PF13180

PDZ_2

PDZ domain

100

179

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ql6-assembly1.cif.gz_A structure of c. trachomatis ct441 0.8841 182 391
4c2d-assembly1.cif.gz_B crystal structure of the protease ctpb in an active state 0.8816 31 345
6bxg-assembly1.cif.gz_A 1.45 angstrom resolution crystal structure of pdz domain of carboxy-terminal protease from vibrio cholerae in complex with peptide. 0.872 93 179
5gnd-assembly1.cif.gz_A structure of deg protease hhoa from synechocystis sp. pcc 6803 0.8678 94 177
6icc-assembly1.cif.gz_A the nz-1 fab complexed with the pdz tandem fragment of a. aeolicus s2p homolog with the pa12 tag inserted between the residues 181 and 186 0.8663 109 173
ID Description Score Start End Superfamily
af_O23614_210_301_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.906 95 179 2.30.42.10
af_Q8I103_336_425_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.8921 98 137 2.30.42.10
af_E7F2H9_595_669_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.8911 96 139 2.30.42.10
1fc6A03 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.8893 192 389 3.90.226.10
af_B7YZE5_42_125_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.8813 97 139 2.30.42.10
ID Description Score Start End GO Terms
AF-A0A6G3SEQ9-F1-model_v4 Peptidase S41 0.937 223 389 GO:0004175
GO:0006508
GO:0007165
GO:0008236
GO:0030288
AF-A0A3B8XB73-F1-model_v4 Tail specific protease domain-containing protein 0.9315 219 339 GO:0004175
GO:0006508
GO:0007165
GO:0008236
GO:0030288
AF-A0A524QH37-F1-model_v4 Peptidase S41 0.9178 177 395 GO:0004175
GO:0006508
GO:0007165
GO:0008236
GO:0030288
AF-A0A3B8XB73-F1-model_v4 Tail specific protease domain-containing protein 0.9168 219 339 GO:0004175
GO:0006508
GO:0007165
GO:0008236
GO:0030288
AF-A0A7C6IUB4-F1-model_v4 S41 family peptidase 0.9159 31 395 GO:0004175
GO:0006508
GO:0007165
GO:0008236
GO:0016020
GO:0030288

Feature Viewer

pLDDT pTM Quality
87.3 0.84 High
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Predicted Structure (AlphaFold2)

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