F227838

General Info

Members Datasets Scaffolds Average Seq Length
157 138 314 326

Family's Representative Sequence

Representative Sequence 3300039437|Ga0436365_1058652|Ga0436365_1058652_2210_3310
Length 366
Sequence MTTDPGPGTDTHRRPASVRDSLRRGSKTAAEVHRLRVLITGGAGFIGSHLAEELLTRGHHVHVLDDLSTGAIENIRHLRQEAGFDYTIDSCHDPRLVAELVDEADHVYHLAAAVGVQLIVESPVRTIETNVHCTEIVLAQACKKRRPVFIASTSEVYGKSAAVPFREDGDIVMGATTRGRWSYACSKALDEFLAIAYHRERRLPVVIGRLFNTVGPRQTDRYGMVLPTFVRQALRGEPLTVFGSGEQRRCFCHVRDVVRGLAEMLGRDDLYGEVFNIGSTEEISIVDLARRVIALTNATSEIALVPYEEAYAEGFEDMARRVPDTTKITRALGWRPTADLNEIIKDVVEHELGSVPVAALSSESSP

Samples

Sample ID Description Type Environment
1 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
47 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
48 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
49 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
69 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
70 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
71 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
72 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
73 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
74 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
75 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
79 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
86 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
87 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
88 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
89 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
90 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
93 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
94 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
95 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
96 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
97 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
98 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
99 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
100 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
101 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
102 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
103 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
104 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
105 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
106 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
107 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
108 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
109 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
110 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
113 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
116 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
117 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
118 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
119 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
120 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
121 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
122 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
132 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
133 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
134 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
135 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
138 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.73
Metatranscriptomes 1.27
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.64
Nodule 0
Rhizoplane 3.82
Rhizosphere 91.08
Stem 0
Stem Tuber 0
Unclassified 12.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436365_1058652 3300039437 Bacteria 6594
2 JGI25406J46586_10027404 3300003203 Bacteria 2185
3 Ga0058862_12725161 3300004803 Bacteria 1356
4 Ga0070658_10236999 3300005327 Bacteria 1546
5 Ga0070670_100056549 3300005331 Bacteria 3367
6 Ga0070680_100189736 3300005336 Bacteria 1732
7 Ga0070671_100073574 3300005355 Bacteria 2854
8 Ga0070673_100518588 3300005364 Bacteria 1080
9 Ga0070659_100357560 3300005366 Bacteria 1226
10 Ga0070710_10001006 3300005437 Bacteria 13416
11 Ga0070711_100001555 3300005439 Bacteria 12639
12 Ga0070681_10052800 3300005458 Bacteria 4054
13 Ga0070698_100055961 3300005471 Bacteria 3998
14 Ga0070699_100000001 3300005518 Bacteria 910751
15 Ga0070679_100066504 3300005530 Bacteria 3593
16 Ga0070665_100000029 3300005548 Bacteria 342699
17 Ga0068857_100432570 3300005577 Bacteria 1228
18 Ga0068856_100087914 3300005614 Bacteria 3090
19 Ga0068859_100030616 3300005617 Bacteria 5401
20 Ga0068864_100265884 3300005618 Bacteria 1597
21 Ga0068863_100194762 3300005841 Unclassified 1948
22 Ga0068858_100044871 3300005842 Unclassified 4097
23 Ga0068860_100210477 3300005843 Unclassified 1886
24 Ga0081538_10005145 3300005981 Bacteria 11855
25 Ga0081538_10019700 3300005981 Bacteria 4997
26 Ga0081538_10058850 3300005981 Bacteria 2225
27 Ga0081539_10000855 3300005985 Bacteria 58253
28 Ga0075364_10009102 3300006051 Bacteria 5947
29 Ga0097621_100154478 3300006237 Bacteria 1969
30 Ga0075428_100020144 3300006844 Bacteria 7388
31 Ga0075430_100085185 3300006846 Bacteria 2646
32 Ga0075431_100029945 3300006847 Bacteria 5605
33 Ga0075431_100404771 3300006847 Bacteria 1365
34 Ga0068865_100199361 3300006881 Bacteria 1553
35 Ga0075436_100142168 3300006914 Bacteria 1687
36 Ga0097620_100030616 3300006931 Bacteria 5401
37 Ga0099794_10000837 3300007265 Bacteria 10381
38 Ga0111539_10067296 3300009094 Bacteria 4230
39 Ga0105245_10401175 3300009098 Bacteria 1370
40 Ga0114129_10005242 3300009147 Bacteria 18268
41 Ga0114129_10474846 3300009147 Bacteria 1637
42 Ga0105248_10227903 3300009177 Bacteria 2097
43 Ga0105248_10421948 3300009177 Bacteria 1502
44 Ga0105237_10002837 3300009545 Bacteria 21076
45 Ga0105249_10325214 3300009553 Bacteria 1550
46 Ga0157370_10112957 3300013104 Bacteria 2539
47 Ga0157369_10099502 3300013105 Unclassified 3100
48 Ga0163162_10212387 3300013306 Bacteria 2065
49 Ga0157372_10368911 3300013307 Bacteria 1673
50 Ga0157372_10508870 3300013307 Bacteria 1404
51 Ga0157375_10189659 3300013308 Bacteria 2210
52 Ga0163163_10027797 3300014325 Bacteria 5424
53 Ga0157379_10149610 3300014968 Bacteria 2106
54 Ga0213875_10047618 3300021388 Unclassified 2011
55 Ga0207692_10000208 3300025898 Bacteria 19770
56 Ga0207688_10147804 3300025901 Bacteria 1386
57 Ga0207707_10090833 3300025912 Bacteria 2669
58 Ga0207671_10003645 3300025914 Bacteria 15209
59 Ga0207693_10096769 3300025915 Bacteria 2314
60 Ga0207663_10002558 3300025916 Bacteria 8741
61 Ga0207650_10030204 3300025925 Bacteria 3902
62 Ga0207644_10339786 3300025931 Bacteria 1217
63 Ga0207690_10133259 3300025932 Bacteria 1821
64 Ga0207706_10312510 3300025933 Bacteria 1368
65 Ga0207704_10086131 3300025938 Bacteria 2048
66 Ga0207679_10084115 3300025945 Bacteria 2441
67 Ga0207708_10268573 3300026075 Bacteria 1379
68 Ga0207641_10187280 3300026088 Unclassified 1900
69 Ga0207641_10398723 3300026088 Bacteria 1321
70 Ga0207676_10287281 3300026095 Bacteria 1496
71 Ga0207674_10357389 3300026116 Bacteria 1412
72 Ga0209588_1035010 3300027671 Unclassified 1614
73 Ga0207428_10011580 3300027907 Bacteria 7785
74 Ga0268266_10001095 3300028379 Bacteria 34007
75 Ga0265323_10016000 3300028653 Bacteria 2937
76 Ga0265760_10000440 3300031090 Bacteria 11669
77 Ga0265316_10191469 3300031344 Bacteria 1519
78 Ga0265314_10015768 3300031711 Bacteria 5986
79 Ga0265314_10193319 3300031711 Bacteria 1209
80 Ga0265342_10016884 3300031712 Bacteria 4758
81 Ga0307516_10234276 3300031730 Unclassified 1538
82 Ga0307413_10129411 3300031824 Bacteria 1725
83 Ga0307410_10054187 3300031852 Bacteria 2718
84 Ga0307407_10091458 3300031903 Bacteria 1866
85 Ga0307409_100112288 3300031995 Bacteria 2288
86 Ga0307411_10178044 3300032005 Bacteria 1611
87 Ga0307411_10286513 3300032005 Bacteria 1314
88 Ga0307415_100162497 3300032126 Bacteria 1732
89 Ga0395900_0171667 3300037418 Bacteria 2207
90 Ga0395898_0035304 3300037466 Bacteria 4974
91 Ga0395905_0016424 3300037471 Bacteria 7035
92 Ga0436364_1128131 3300037853 Bacteria 22342
93 Ga0395901_0026256 3300038443 Bacteria 5979
94 Ga0400490_09825 3300038726 Unclassified 4509
95 Ga0400490_45188 3300038726 Bacteria 13399
96 Ga0436365_0446495 3300039437 Bacteria 1739
97 Ga0466966_0117226 3300044684 Bacteria 1638
98 Ga0466964_0071538 3300044706 Bacteria 1468
99 Ga0466971_0062780 3300044719 Bacteria 1681
100 Ga0466960_0081526 3300044901 Bacteria 1632
101 Ga0466959_0173922 3300045049 Bacteria 1509
102 Ga0451576_0012065 3300045051 Bacteria 9753
103 Ga0466958_0133651 3300045836 Unclassified 1559
104 Ga0495592_0045231 3300046454 Unclassified 3286
105 Ga0495651_0022558 3300046462 Unclassified 4893
106 Ga0495651_0027529 3300046462 Bacteria 4428
107 Ga0495662_0008523 3300046476 Bacteria 5040
108 Ga0495664_0047024 3300046477 Bacteria 2560
109 Ga0495628_0008776 3300046516 Bacteria 8651
110 Ga0495630_0005327 3300046517 Bacteria 9078
111 Ga0495652_0011323 3300046529 Bacteria 8069
112 Ga0495640_0007375 3300046533 Bacteria 8656
113 Ga0495587_0058253 3300046536 Unclassified 2270
114 Ga0495645_0000955 3300046543 Bacteria 19773
115 Ga0495645_0067200 3300046543 Bacteria 2589
116 Ga0495667_0000888 3300046559 Bacteria 19337
117 Ga0495667_0240497 3300046559 Bacteria 1153
118 Ga0495635_0006574 3300046663 Bacteria 8113
119 Ga0495657_0041208 3300046675 Unclassified 3163
120 Ga0495599_0035033 3300046678 Bacteria 3152
121 Ga0495623_0001153 3300046679 Bacteria 17883
122 Ga0495646_0039872 3300046680 Unclassified 2894
123 Ga0495646_0192191 3300046680 Bacteria 1115
124 Ga0495600_0021342 3300046809 Unclassified 4146
125 Ga0495604_0000389 3300047317 Bacteria 39686
126 Ga0495674_0000149 3300047319 Bacteria 53814
127 Ga0495674_0006297 3300047319 Bacteria 11378
128 Ga0495680_0056589 3300047322 Unclassified 3035
129 Ga0495675_0000396 3300047444 Bacteria 30187
130 Ga0495684_0000296 3300047471 Bacteria 40546
131 Ga0495602_0026248 3300048088 Bacteria 5621
132 Ga0496100_0015862 3300048903 Bacteria 4410
133 Ga0496104_0192606 3300048907 Bacteria 1951
134 Ga0496108_0128927 3300048911 Bacteria 2174
135 Ga0496109_0002501 3300048912 Bacteria 15413
136 Ga0496112_0002125 3300048915 Bacteria 15734
137 Ga0496115_0000429 3300048918 Bacteria 34014
138 Ga0501031_0000048 3300049568 Bacteria 65739
139 Ga0501032_0017947 3300049569 Bacteria 4964
140 Ga0501033_0010378 3300049570 Bacteria 7145
141 Ga0501034_0040303 3300049571 Bacteria 4727
142 Ga0501037_0035254 3300049573 Bacteria 3691
143 Ga0501043_0347650 3300049579 Bacteria 1127
144 Ga0501047_0236971 3300049581 Bacteria 1676
145 Ga0501081_0023936 3300049743 Bacteria 4097
146 Ga0501035_0002276 3300049822 Bacteria 18973
147 Ga0501035_0438715 3300049822 Bacteria 1082
148 Ga0501044_0000202 3300049823 Bacteria 75472
149 nmdc:mga09592_15694_c1 3300050508 Bacteria 6189
150 nmdc:mga0qj67_38476_c1 3300050509 Bacteria 3753
151 nmdc:mga06r32_115919_c1 3300050510 Unclassified 2639
152 nmdc:mga06r32_15653_c1 3300050510 Bacteria 6890
153 nmdc:mga08y16_33651_c1 3300050511 Bacteria 5382
154 nmdc:mga0a205_284214_c1 3300050515 Bacteria 1529
155 nmdc:mga0a205_515835_c1 3300050515 Bacteria 1052
156 Ga0495601_0140861 3300053077 Unclassified 1573
157 Ga0501084_0513002 3300054114 Bacteria 1013
158 Ga0436365_1058652
159 JGI25406J46586_10027404
160 Ga0058862_12725161
161 Ga0070658_10236999
162 Ga0070670_100056549
163 Ga0070680_100189736
164 Ga0070671_100073574
165 Ga0070673_100518588
166 Ga0070659_100357560
167 Ga0070710_10001006
168 Ga0070711_100001555
169 Ga0070681_10052800
170 Ga0070698_100055961
171 Ga0070699_100000001
172 Ga0070679_100066504
173 Ga0070665_100000029
174 Ga0068857_100432570
175 Ga0068856_100087914
176 Ga0068859_100030616
177 Ga0068864_100265884
178 Ga0068863_100194762
179 Ga0068858_100044871
180 Ga0068860_100210477
181 Ga0081538_10005145
182 Ga0081538_10019700
183 Ga0081538_10058850
184 Ga0081539_10000855
185 Ga0075364_10009102
186 Ga0097621_100154478
187 Ga0075428_100020144
188 Ga0075430_100085185
189 Ga0075431_100029945
190 Ga0075431_100404771
191 Ga0068865_100199361
192 Ga0075436_100142168
193 Ga0097620_100030616
194 Ga0099794_10000837
195 Ga0111539_10067296
196 Ga0105245_10401175
197 Ga0114129_10005242
198 Ga0114129_10474846
199 Ga0105248_10227903
200 Ga0105248_10421948
201 Ga0105237_10002837
202 Ga0105249_10325214
203 Ga0157370_10112957
204 Ga0157369_10099502
205 Ga0163162_10212387
206 Ga0157372_10368911
207 Ga0157372_10508870
208 Ga0157375_10189659
209 Ga0163163_10027797
210 Ga0157379_10149610
211 Ga0213875_10047618
212 Ga0207692_10000208
213 Ga0207688_10147804
214 Ga0207707_10090833
215 Ga0207671_10003645
216 Ga0207693_10096769
217 Ga0207663_10002558
218 Ga0207650_10030204
219 Ga0207644_10339786
220 Ga0207690_10133259
221 Ga0207706_10312510
222 Ga0207704_10086131
223 Ga0207679_10084115
224 Ga0207708_10268573
225 Ga0207641_10187280
226 Ga0207641_10398723
227 Ga0207676_10287281
228 Ga0207674_10357389
229 Ga0209588_1035010
230 Ga0207428_10011580
231 Ga0268266_10001095
232 Ga0265323_10016000
233 Ga0265760_10000440
234 Ga0265316_10191469
235 Ga0265314_10015768
236 Ga0265314_10193319
237 Ga0265342_10016884
238 Ga0307516_10234276
239 Ga0307413_10129411
240 Ga0307410_10054187
241 Ga0307407_10091458
242 Ga0307409_100112288
243 Ga0307411_10178044
244 Ga0307411_10286513
245 Ga0307415_100162497
246 Ga0395900_0171667
247 Ga0395898_0035304
248 Ga0395905_0016424
249 Ga0436364_1128131
250 Ga0395901_0026256
251 Ga0400490_09825
252 Ga0400490_45188
253 Ga0436365_0446495
254 Ga0466966_0117226
255 Ga0466964_0071538
256 Ga0466971_0062780
257 Ga0466960_0081526
258 Ga0466959_0173922
259 Ga0451576_0012065
260 Ga0466958_0133651
261 Ga0495592_0045231
262 Ga0495651_0022558
263 Ga0495651_0027529
264 Ga0495662_0008523
265 Ga0495664_0047024
266 Ga0495628_0008776
267 Ga0495630_0005327
268 Ga0495652_0011323
269 Ga0495640_0007375
270 Ga0495587_0058253
271 Ga0495645_0000955
272 Ga0495645_0067200
273 Ga0495667_0000888
274 Ga0495667_0240497
275 Ga0495635_0006574
276 Ga0495657_0041208
277 Ga0495599_0035033
278 Ga0495623_0001153
279 Ga0495646_0039872
280 Ga0495646_0192191
281 Ga0495600_0021342
282 Ga0495604_0000389
283 Ga0495674_0000149
284 Ga0495674_0006297
285 Ga0495680_0056589
286 Ga0495675_0000396
287 Ga0495684_0000296
288 Ga0495602_0026248
289 Ga0496100_0015862
290 Ga0496104_0192606
291 Ga0496108_0128927
292 Ga0496109_0002501
293 Ga0496112_0002125
294 Ga0496115_0000429
295 Ga0501031_0000048
296 Ga0501032_0017947
297 Ga0501033_0010378
298 Ga0501034_0040303
299 Ga0501037_0035254
300 Ga0501043_0347650
301 Ga0501047_0236971
302 Ga0501081_0023936
303 Ga0501035_0002276
304 Ga0501035_0438715
305 Ga0501044_0000202
306 nmdc:mga09592_15694_c1
307 nmdc:mga0qj67_38476_c1
308 nmdc:mga06r32_115919_c1
309 nmdc:mga06r32_15653_c1
310 nmdc:mga08y16_33651_c1
311 nmdc:mga0a205_284214_c1
312 nmdc:mga0a205_515835_c1
313 Ga0495601_0140861
314 Ga0501084_0513002

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

38

347

0.89

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

37

278

0.88

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

37

163

0.87

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

173

313

0.85

PF07993

NAD_binding_4

Male sterility protein

93

233

0.79

PF04321

RmlD_sub_bind

RmlD substrate binding domain

35

350

0.78

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

38

197

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
2b69-assembly1.cif.gz_A crystal structure of human udp-glucoronic acid decarboxylase 0.9417 2 324
4m55-assembly1.cif.gz_D crystal structure of human udp-xylose synthase r236h substitution 0.9404 2 320
4lk3-assembly1.cif.gz_E crystal structure of human udp-xylose synthase r236a substitution 0.9324 2 324
4lk3-assembly1.cif.gz_D crystal structure of human udp-xylose synthase r236a substitution 0.9308 2 324
2b69-assembly1.cif.gz_A crystal structure of human udp-glucoronic acid decarboxylase 0.93 2 324
ID Description Score Start End Superfamily
af_A0A0R0KMW5_231_418_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9505 126 321 3.40.50.720
af_A0A1D6N7M5_279_504_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9479 93 322 3.40.50.720
af_A0A0R0KMW5_231_418_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9408 126 321 3.40.50.720
2b69A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9326 2 304 3.40.50.720
4lk3E00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9324 2 324 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2V8FLA9-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9906 2 319 GO:0005737
GO:0033320
GO:0042732
GO:0048040
GO:0070403
AF-A0A5C6CPV4-F1-model_v4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 0.985 1 319 GO:0033320
GO:0048040
AF-A0A7W0RGU4-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9839 5 277 GO:0005737
GO:0042732
GO:0048040
GO:0070403
AF-A0A533Y0N3-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9832 59 319 GO:0005737
GO:0033320
GO:0042732
GO:0048040
GO:0070403
AF-A0A7C2W1I3-F1-model_v4 UDP-glucuronate decarboxylase (EC 4.1.1.35) 0.9821 138 318 GO:0005737
GO:0042732
GO:0048040
GO:0070403

Map