F227695

General Info

Members Datasets Scaffolds Average Seq Length
157 31 157 116

Family's Representative Sequence

Representative Sequence 3300032168|Ga0316593_10014167|Ga0316593_100141672
Length 120
Sequence MNVSGKKASRMRRGRRTRAKIRELGRHRLCVHRTPRHIYAQLIGPDGGTTLVSASTLDKQVRGELKQTGNVDAAVAVGKLLAERAKEKGISEVAFDRSGFRYHGRVKALADAAREAGLKF

Samples

Sample ID Description Type Environment
1 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
2 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
3 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
4 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
5 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
6 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
7 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
8 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
9 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
10 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
11 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
12 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
13 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
14 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
15 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
19 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
20 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
21 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
22 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
23 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
24 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
25 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
26 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
27 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
28 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
29 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
30 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
31 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 63.06
Metatranscriptomes 36.94
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.18
Nodule 0
Rhizoplane 0
Rhizosphere 95.54
Stem 0
Stem Tuber 0
Unclassified 1.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070698_100047224 3300005471 Bacteria 4401
2 Ga0075364_10038599 3300006051 Bacteria 3094
3 Ga0070715_10578494 3300006163 Bacteria 655
4 Ga0075367_10629195 3300006178 Bacteria 682
5 Ga0157371_10914205 3300013102 Bacteria 666
6 Ga0265327_10000005 3300031251 Bacteria 790146
7 Ga0316575_10001471 3300031665 Bacteria 7589
8 Ga0316575_10001836 3300031665 Bacteria 6975
9 Ga0316575_10088885 3300031665 Bacteria 1250
10 Ga0316575_10104377 3300031665 Bacteria 1154
11 Ga0316575_10304592 3300031665 Bacteria 674
12 Ga0316579_10001358 3300031691 Bacteria 8860
13 Ga0316579_10009012 3300031691 Bacteria 4185
14 Ga0316579_10010128 3300031691 Bacteria 3978
15 Ga0316579_10010387 3300031691 Bacteria 3935
16 Ga0316579_10072375 3300031691 Bacteria 1635
17 Ga0316576_10000685 3300031727 Bacteria 16585
18 Ga0316576_10012044 3300031727 Bacteria 5699
19 Ga0316576_10019969 3300031727 Bacteria 4599
20 Ga0316576_10135201 3300031727 Bacteria 1855
21 Ga0316576_10152731 3300031727 Bacteria 1740
22 Ga0316578_10000445 3300031728 Bacteria 13704
23 Ga0316578_10001214 3300031728 Bacteria 10228
24 Ga0316578_10014712 3300031728 Bacteria 4188
25 Ga0316578_10089235 3300031728 Bacteria 1840
26 Ga0316578_10114576 3300031728 Bacteria 1619
27 Ga0316578_10312654 3300031728 Bacteria 938
28 Ga0316578_10313962 3300031728 Bacteria 936
29 Ga0316578_10839908 3300031728 Bacteria 531
30 Ga0316577_10000967 3300031733 Bacteria 12817
31 Ga0316577_10009675 3300031733 Bacteria 5190
32 Ga0316577_10039882 3300031733 Bacteria 2626
33 Ga0316577_10043034 3300031733 Bacteria 2527
34 Ga0316577_10076497 3300031733 Bacteria 1869
35 Ga0316577_10097861 3300031733 Bacteria 1644
36 Ga0316577_10133559 3300031733 Bacteria 1397
37 Ga0316577_10170272 3300031733 Bacteria 1229
38 Ga0316577_10172338 3300031733 Bacteria 1221
39 Ga0316583_10008029 3300032133 Bacteria 3802
40 Ga0316583_10018653 3300032133 Bacteria 2491
41 Ga0316583_10087825 3300032133 Bacteria 1085
42 Ga0316585_10005415 3300032137 Bacteria 3602
43 Ga0316585_10041400 3300032137 Bacteria 1468
44 Ga0316585_10058099 3300032137 Bacteria 1246
45 Ga0316585_10062142 3300032137 Bacteria 1207
46 Ga0316585_10082254 3300032137 Bacteria 1049
47 Ga0316585_10139393 3300032137 Bacteria 800
48 Ga0316580_10006433 3300032139 Bacteria 3470
49 Ga0316580_10021418 3300032139 Bacteria 1992
50 Ga0316580_10052099 3300032139 Bacteria 1261
51 Ga0316593_10000032 3300032168 Bacteria 14610
52 Ga0316593_10000041 3300032168 Bacteria 14110
53 Ga0316593_10000071 3300032168 Bacteria 12266
54 Ga0316593_10000407 3300032168 Bacteria 7767
55 Ga0316593_10000520 3300032168 Bacteria 7142
56 Ga0316593_10000658 3300032168 Bacteria 6651
57 Ga0316593_10000918 3300032168 Bacteria 6043
58 Ga0316593_10000996 3300032168 Bacteria 5864
59 Ga0316593_10001014 3300032168 Bacteria 5811
60 Ga0316593_10001899 3300032168 Bacteria 4793
61 Ga0316593_10003948 3300032168 Bacteria 3748
62 Ga0316593_10004584 3300032168 Bacteria 3563
63 Ga0316593_10004970 3300032168 Bacteria 3465
64 Ga0316593_10005257 3300032168 Bacteria 3398
65 Ga0316593_10006051 3300032168 Bacteria 3241
66 Ga0316593_10009756 3300032168 Bacteria 2725
67 Ga0316593_10013932 3300032168 Bacteria 2389
68 Ga0316593_10014167 3300032168 Bacteria 2373
69 Ga0316593_10017678 3300032168 Bacteria 2178
70 Ga0316593_10017709 3300032168 Bacteria 2176
71 Ga0316593_10029770 3300032168 Bacteria 1768
72 Ga0316593_10036241 3300032168 Bacteria 1626
73 Ga0316593_10038722 3300032168 Bacteria 1579
74 Ga0316593_10042157 3300032168 Bacteria 1522
75 Ga0316593_10066383 3300032168 Bacteria 1241
76 Ga0316593_10080801 3300032168 Bacteria 1134
77 Ga0316593_10108273 3300032168 Bacteria 991
78 Ga0316593_10319313 3300032168 Unclassified 590
79 Ga0316593_10452116 3300032168 Bacteria 501
80 Ga0316592_1000011 3300033524 Bacteria 13521
81 Ga0316592_1000041 3300033524 Bacteria 10240
82 Ga0316592_1000599 3300033524 Bacteria 5204
83 Ga0316592_1004421 3300033524 Bacteria 2612
84 Ga0316592_1006660 3300033524 Bacteria 2233
85 Ga0316592_1007100 3300033524 Bacteria 2177
86 Ga0316592_1060550 3300033524 Bacteria 850
87 Ga0316586_1000300 3300033527 Bacteria 4509
88 Ga0316586_1033634 3300033527 Bacteria 885
89 Ga0316586_1115694 3300033527 Bacteria 520
90 Ga0316588_1028517 3300033528 Bacteria 1302
91 Ga0316596_1000014 3300033541 Bacteria 16366
92 Ga0316596_1000040 3300033541 Bacteria 13770
93 Ga0316596_1000073 3300033541 Bacteria 11690
94 Ga0316596_1000123 3300033541 Bacteria 10193
95 Ga0316596_1000154 3300033541 Bacteria 9581
96 Ga0316596_1000296 3300033541 Bacteria 7867
97 Ga0316596_1000651 3300033541 Bacteria 6226
98 Ga0316596_1000780 3300033541 Bacteria 5864
99 Ga0316596_1004126 3300033541 Bacteria 3230
100 Ga0316596_1004228 3300033541 Bacteria 3206
101 Ga0316596_1004696 3300033541 Bacteria 3082
102 Ga0316596_1007975 3300033541 Bacteria 2511
103 Ga0316596_1018412 3300033541 Bacteria 1764
104 Ga0316596_1027881 3300033541 Bacteria 1459
105 Ga0316596_1059788 3300033541 Bacteria 1016
106 Ga0316596_1120407 3300033541 Bacteria 714
107 Ga0316596_1122795 3300033541 Bacteria 707
108 Ga0316596_1140396 3300033541 Bacteria 661
109 Ga0373949_0169419 3300035090 Bacteria 641
110 Ga0316574_0009540 3300035398 Bacteria 5440
111 Ga0316574_0033582 3300035398 Bacteria 3123
112 Ga0316574_0038291 3300035398 Bacteria 2943
113 Ga0316574_0123604 3300035398 Bacteria 1662
114 Ga0316574_0156512 3300035398 Bacteria 1468
115 Ga0316574_0163615 3300035398 Bacteria 1433
116 Ga0316574_0449150 3300035398 Bacteria 808
117 Ga0316574_0542435 3300035398 Bacteria 722
118 Ga0316574_0609010 3300035398 Bacteria 674
119 Ga0316574_0886510 3300035398 Bacteria 540
120 Ga0316574_0968907 3300035398 Unclassified 513
121 Ga0316582_0001466 3300036647 Bacteria 10378
122 Ga0316582_0008752 3300036647 Bacteria 5453
123 Ga0316582_0012337 3300036647 Bacteria 4764
124 Ga0316582_0023680 3300036647 Bacteria 3663
125 Ga0316582_0027979 3300036647 Bacteria 3411
126 Ga0316582_0043630 3300036647 Bacteria 2814
127 Ga0316582_0054399 3300036647 Bacteria 2548
128 Ga0316582_0103650 3300036647 Bacteria 1887
129 Ga0316582_0124550 3300036647 Bacteria 1727
130 Ga0316582_0149452 3300036647 Bacteria 1578
131 Ga0316582_0209274 3300036647 Bacteria 1332
132 Ga0316582_0267103 3300036647 Bacteria 1173
133 Ga0316584_0000609 3300036712 Bacteria 19432
134 Ga0316584_0004833 3300036712 Bacteria 8958
135 Ga0316584_0004999 3300036712 Bacteria 8833
136 Ga0316584_0005838 3300036712 Bacteria 8309
137 Ga0316584_0015064 3300036712 Bacteria 5524
138 Ga0316584_0022696 3300036712 Bacteria 4580
139 Ga0316584_0046995 3300036712 Bacteria 3224
140 Ga0316584_0177197 3300036712 Bacteria 1579
141 Ga0316584_0201112 3300036712 Bacteria 1470
142 Ga0316584_0274015 3300036712 Bacteria 1227
143 Ga0316584_0723940 3300036712 Bacteria 681
144 Ga0316581_0003763 3300037588 Bacteria 3809
145 Ga0316581_0008237 3300037588 Bacteria 2829
146 Ga0316581_0038494 3300037588 Bacteria 1454
147 Ga0316581_0102930 3300037588 Bacteria 879
148 Ga0316581_0131821 3300037588 Bacteria 771
149 Ga0316581_0169990 3300037588 Bacteria 672
150 Ga0400487_43948 3300039110 Bacteria 1018
151 Ga0453684_0002985 3300044712 Bacteria 39370
152 Ga0453684_0009530 3300044712 Bacteria 16970
153 Ga0496121_0746518 3300048924 Bacteria 582
154 nmdc:mga00v17_53813_c1 3300050491 Bacteria 2454
155 nmdc:mga06z11_356806_c1 3300050494 Bacteria 876
156 Ga0500555_028971 3300053103 Bacteria 1575
157 Ga0501084_1329905 3300054114 Bacteria 602

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300033527 Ga0316586_1033634 Ga0316586_10336341 97
2 3300050494 nmdc:mga06z11_356806_c1 nmdc:mga06z11_356806_c1_495_800 101
3 3300031733 Ga0316577_10133559 Ga0316577_101335592 102
4 3300032137 Ga0316585_10082254 Ga0316585_100822542 102
5 3300032168 Ga0316593_10066383 Ga0316593_100663832 102
6 3300033541 Ga0316596_1000154 Ga0316596_100015418 102
7 3300035398 Ga0316574_0156512 Ga0316574_0156512_332_688 102
8 3300036647 Ga0316582_0001466 Ga0316582_0001466_7933_8241 102
9 3300036647 Ga0316582_0008752 Ga0316582_0008752_3857_4213 102
10 3300032168 Ga0316593_10000520 Ga0316593_100005204 105
11 3300033541 Ga0316596_1000040 Ga0316596_100004010 105
12 3300036647 Ga0316582_0054399 Ga0316582_0054399_1427_1780 105
13 3300054114 Ga0501084_1329905 Ga0501084_1329905_257_589 110
14 3300032168 Ga0316593_10004584 Ga0316593_100045845 111
15 3300035398 Ga0316574_0163615 Ga0316574_0163615_375_728 111
16 3300006163 Ga0070715_10578494 Ga0070715_105784941 115
17 3300031251 Ga0265327_10000005 Ga0265327_10000005194 115
18 3300031665 Ga0316575_10001471 Ga0316575_1000147113 115
19 3300006178 Ga0075367_10629195 Ga0075367_106291951 116
20 3300005471 Ga0070698_100047224 Ga0070698_1000472247 117
21 3300006051 Ga0075364_10038599 Ga0075364_100385997 117
22 3300013102 Ga0157371_10914205 Ga0157371_109142052 117
23 3300031665 Ga0316575_10001836 Ga0316575_100018363 117
24 3300031665 Ga0316575_10088885 Ga0316575_100888851 117
25 3300031665 Ga0316575_10104377 Ga0316575_101043772 117
26 3300031665 Ga0316575_10304592 Ga0316575_103045921 117
27 3300031691 Ga0316579_10001358 Ga0316579_1000135816 117
28 3300031691 Ga0316579_10009012 Ga0316579_100090125 117
29 3300031691 Ga0316579_10010128 Ga0316579_100101285 117
30 3300031691 Ga0316579_10010387 Ga0316579_100103871 117
31 3300031691 Ga0316579_10072375 Ga0316579_100723752 117
32 3300031727 Ga0316576_10000685 Ga0316576_1000068510 117
33 3300031727 Ga0316576_10012044 Ga0316576_100120445 117
34 3300031727 Ga0316576_10019969 Ga0316576_100199695 117
35 3300031727 Ga0316576_10135201 Ga0316576_101352015 117
36 3300031727 Ga0316576_10152731 Ga0316576_101527311 117
37 3300031728 Ga0316578_10000445 Ga0316578_100004458 117
38 3300031728 Ga0316578_10001214 Ga0316578_100012145 117
39 3300031728 Ga0316578_10014712 Ga0316578_100147122 117
40 3300031728 Ga0316578_10089235 Ga0316578_100892354 117
41 3300031728 Ga0316578_10114576 Ga0316578_101145762 117
42 3300031728 Ga0316578_10312654 Ga0316578_103126542 117
43 3300031728 Ga0316578_10313962 Ga0316578_103139621 117
44 3300031728 Ga0316578_10839908 Ga0316578_108399082 117
45 3300031733 Ga0316577_10000967 Ga0316577_1000096712 117
46 3300031733 Ga0316577_10009675 Ga0316577_100096759 117
47 3300031733 Ga0316577_10039882 Ga0316577_100398822 117
48 3300031733 Ga0316577_10043034 Ga0316577_100430342 117
49 3300031733 Ga0316577_10076497 Ga0316577_100764972 117
50 3300031733 Ga0316577_10097861 Ga0316577_100978611 117
51 3300031733 Ga0316577_10170272 Ga0316577_101702722 117
52 3300031733 Ga0316577_10172338 Ga0316577_101723382 117
53 3300032133 Ga0316583_10008029 Ga0316583_100080294 117
54 3300032133 Ga0316583_10018653 Ga0316583_100186534 117
55 3300032133 Ga0316583_10087825 Ga0316583_100878252 117
56 3300032137 Ga0316585_10005415 Ga0316585_100054155 117
57 3300032137 Ga0316585_10041400 Ga0316585_100414002 117
58 3300032137 Ga0316585_10058099 Ga0316585_100580993 117
59 3300032137 Ga0316585_10062142 Ga0316585_100621423 117
60 3300032137 Ga0316585_10139393 Ga0316585_101393932 117
61 3300032139 Ga0316580_10006433 Ga0316580_100064333 117
62 3300032139 Ga0316580_10021418 Ga0316580_100214183 117
63 3300032139 Ga0316580_10052099 Ga0316580_100520992 117
64 3300032168 Ga0316593_10000032 Ga0316593_1000003217 117
65 3300032168 Ga0316593_10000041 Ga0316593_1000004112 117
66 3300032168 Ga0316593_10000071 Ga0316593_100000712 117
67 3300032168 Ga0316593_10000407 Ga0316593_100004075 117
68 3300032168 Ga0316593_10000658 Ga0316593_1000065812 117
69 3300032168 Ga0316593_10000918 Ga0316593_1000091810 117
70 3300032168 Ga0316593_10000996 Ga0316593_1000099610 117
71 3300032168 Ga0316593_10001014 Ga0316593_1000101414 117
72 3300032168 Ga0316593_10001899 Ga0316593_100018995 117
73 3300032168 Ga0316593_10003948 Ga0316593_100039481 117
74 3300032168 Ga0316593_10004970 Ga0316593_100049703 117
75 3300032168 Ga0316593_10005257 Ga0316593_100052572 117
76 3300032168 Ga0316593_10006051 Ga0316593_100060513 117
77 3300032168 Ga0316593_10009756 Ga0316593_100097563 117
78 3300032168 Ga0316593_10013932 Ga0316593_100139324 117
79 3300032168 Ga0316593_10014167 Ga0316593_100141672 117
80 3300032168 Ga0316593_10017678 Ga0316593_100176781 117
81 3300032168 Ga0316593_10017709 Ga0316593_100177095 117
82 3300032168 Ga0316593_10029770 Ga0316593_100297705 117
83 3300032168 Ga0316593_10036241 Ga0316593_100362413 117
84 3300032168 Ga0316593_10038722 Ga0316593_100387222 117
85 3300032168 Ga0316593_10042157 Ga0316593_100421572 117
86 3300032168 Ga0316593_10080801 Ga0316593_100808012 117
87 3300032168 Ga0316593_10108273 Ga0316593_101082732 117
88 3300032168 Ga0316593_10319313 Ga0316593_103193131 117
89 3300032168 Ga0316593_10452116 Ga0316593_104521161 117
90 3300033524 Ga0316592_1000011 Ga0316592_10000115 117
91 3300033524 Ga0316592_1000041 Ga0316592_10000415 117
92 3300033524 Ga0316592_1000599 Ga0316592_10005995 117
93 3300033524 Ga0316592_1004421 Ga0316592_10044215 117
94 3300033524 Ga0316592_1006660 Ga0316592_10066602 117
95 3300033524 Ga0316592_1007100 Ga0316592_10071002 117
96 3300033524 Ga0316592_1060550 Ga0316592_10605501 117
97 3300033527 Ga0316586_1000300 Ga0316586_10003003 117
98 3300033527 Ga0316586_1115694 Ga0316586_11156942 117
99 3300033528 Ga0316588_1028517 Ga0316588_10285173 117
100 3300033541 Ga0316596_1000014 Ga0316596_100001419 117
101 3300033541 Ga0316596_1000073 Ga0316596_100007313 117
102 3300033541 Ga0316596_1000123 Ga0316596_100012319 117
103 3300033541 Ga0316596_1000296 Ga0316596_10002962 117
104 3300033541 Ga0316596_1000651 Ga0316596_10006512 117
105 3300033541 Ga0316596_1000780 Ga0316596_10007807 117
106 3300033541 Ga0316596_1004126 Ga0316596_10041265 117
107 3300033541 Ga0316596_1004228 Ga0316596_10042285 117
108 3300033541 Ga0316596_1004696 Ga0316596_10046965 117
109 3300033541 Ga0316596_1007975 Ga0316596_10079751 117
110 3300033541 Ga0316596_1018412 Ga0316596_10184122 117
111 3300033541 Ga0316596_1027881 Ga0316596_10278814 117
112 3300033541 Ga0316596_1059788 Ga0316596_10597882 117
113 3300033541 Ga0316596_1120407 Ga0316596_11204072 117
114 3300033541 Ga0316596_1122795 Ga0316596_11227951 117
115 3300033541 Ga0316596_1140396 Ga0316596_11403962 117
116 3300035090 Ga0373949_0169419 Ga0373949_0169419_190_546 117
117 3300035398 Ga0316574_0009540 Ga0316574_0009540_4692_5045 117
118 3300035398 Ga0316574_0033582 Ga0316574_0033582_851_1204 117
119 3300035398 Ga0316574_0038291 Ga0316574_0038291_1547_1900 117
120 3300035398 Ga0316574_0123604 Ga0316574_0123604_1183_1536 117
121 3300035398 Ga0316574_0449150 Ga0316574_0449150_103_456 117
122 3300035398 Ga0316574_0542435 Ga0316574_0542435_212_565 117
123 3300035398 Ga0316574_0609010 Ga0316574_0609010_157_510 117
124 3300035398 Ga0316574_0886510 Ga0316574_0886510_71_424 117
125 3300035398 Ga0316574_0968907 Ga0316574_0968907_66_422 117
126 3300036647 Ga0316582_0012337 Ga0316582_0012337_1630_1983 117
127 3300036647 Ga0316582_0023680 Ga0316582_0023680_1481_1837 117
128 3300036647 Ga0316582_0027979 Ga0316582_0027979_2978_3331 117
129 3300036647 Ga0316582_0043630 Ga0316582_0043630_1455_1808 117
130 3300036647 Ga0316582_0103650 Ga0316582_0103650_1409_1762 117
131 3300036647 Ga0316582_0124550 Ga0316582_0124550_288_644 117
132 3300036647 Ga0316582_0149452 Ga0316582_0149452_884_1237 117
133 3300036647 Ga0316582_0209274 Ga0316582_0209274_308_664 117
134 3300036647 Ga0316582_0267103 Ga0316582_0267103_308_661 117
135 3300036712 Ga0316584_0000609 Ga0316584_0000609_7803_8159 117
136 3300036712 Ga0316584_0004833 Ga0316584_0004833_5473_5829 117
137 3300036712 Ga0316584_0004999 Ga0316584_0004999_2365_2718 117
138 3300036712 Ga0316584_0005838 Ga0316584_0005838_654_1010 117
139 3300036712 Ga0316584_0015064 Ga0316584_0015064_5010_5363 117
140 3300036712 Ga0316584_0022696 Ga0316584_0022696_1411_1764 117
141 3300036712 Ga0316584_0046995 Ga0316584_0046995_1989_2345 117
142 3300036712 Ga0316584_0177197 Ga0316584_0177197_232_585 117
143 3300036712 Ga0316584_0201112 Ga0316584_0201112_867_1220 117
144 3300036712 Ga0316584_0274015 Ga0316584_0274015_811_1164 117
145 3300036712 Ga0316584_0723940 Ga0316584_0723940_287_640 117
146 3300037588 Ga0316581_0003763 Ga0316581_0003763_2262_2615 117
147 3300037588 Ga0316581_0008237 Ga0316581_0008237_712_1065 117
148 3300037588 Ga0316581_0038494 Ga0316581_0038494_1074_1427 117
149 3300037588 Ga0316581_0102930 Ga0316581_0102930_80_433 117
150 3300037588 Ga0316581_0131821 Ga0316581_0131821_361_714 117
151 3300037588 Ga0316581_0169990 Ga0316581_0169990_96_449 117
152 3300039110 Ga0400487_43948 Ga0400487_43948_34_390 117
153 3300044712 Ga0453684_0002985 Ga0453684_0002985_7723_8079 117
154 3300044712 Ga0453684_0009530 Ga0453684_0009530_9895_10248 117
155 3300048924 Ga0496121_0746518 Ga0496121_0746518_59_412 117
156 3300050491 nmdc:mga00v17_53813_c1 nmdc:mga00v17_53813_c1_1814_2167 117
157 3300053103 Ga0500555_028971 Ga0500555_028971_624_977 117

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00861

Ribosomal_L18p

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

4

120

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7m4w-assembly1.cif.gz_N a. baumannii ribosome-eravacycline complex: empty 70s 0.9585 2 117
7m4w-assembly1.cif.gz_N a. baumannii ribosome-eravacycline complex: empty 70s 0.9505 2 117
6v3b-assembly1.cif.gz_N cryo-em structure of the acinetobacter baumannii ribosome: 70s in empty state 0.9473 2 117
7jt1-assembly1.cif.gz_o 70s ribosome stalled on long mrna with arfb-1 and arfb-2 bound (+9-iii) 0.9459 2 117
4woi-assembly2.cif.gz_CO 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge b2 0.9424 2 117
ID Description Score Start End Superfamily
4pecO00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9569 2 117 3.30.420.100
4pecO00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.949 2 117 3.30.420.100
6ddga01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9475 25 117 3.30.420.100
af_B6SLT9_8_113_3.30.420.100 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9184 19 117 3.30.420.100
5zetP01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9182 22 117 3.30.420.100
ID Description Score Start End GO Terms
AF-A0A656B243-F1-model_v4 deleted 0.9854 36 117
AF-A0A7G3ETE4-F1-model_v4 deleted 0.9846 25 117
AF-A0A377D9W8-F1-model_v4 Large ribosomal subunit protein uL18 0.983 15 117 GO:0003735
GO:0006412
GO:0008097
GO:0022625
AF-A0A379TKD3-F1-model_v4 Large ribosomal subunit protein uL18 0.983 17 117 GO:0003735
GO:0006412
GO:0008097
GO:0022625
AF-A0A849T300-F1-model_v4 Large ribosomal subunit protein uL18 0.9827 6 117 GO:0003735
GO:0006412
GO:0008097
GO:0022625

Feature Viewer

pLDDT pTM Quality
86.78 0.76 High
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Predicted Structure (AlphaFold2)

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