F224750

General Info

Members Datasets Scaffolds Average Seq Length
156 127 135 379

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10266399|Ga0114129_102663991
Length 367
Sequence VRRRARIVARRTAPAERPHPAAAARAAGLRYVSDHEPGIRRRRAGGGFVYTAPSGSRISAPAELARIRALAVPPAWKDAWICPDETGHIQATGRDSRGRKQYRYHPRWRAFRDDHKYERLSAIGQVLPAIRARVERDLARRGLPREKVLALVVRLLESTLIRVGNAEYARDNRSFGLTTLRANHVDVSGSRLRFRFRGKSRKDHTVGLQDPRLSRILRRCQELPGQELFRYLDAGGKPRRIDSGDVNDYLRGVARCELTAKDFRTWGATMRAAWALRELPPPRSKADGKRSVTRAIEEVSRRLGNTVSICRRCYVHPAVVDAYLEGSLHSGLRRARRSNGGSRLRPHESAVLAFLARRAPARERPAA

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2513237092 Bradyrhizobium sp. WSM1743 Isolate Nodule
3 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
4 2721755755 Bradyrhizobium icense LMTR 13 Isolate Nodule
5 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
6 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
7 2773857925 Microvirga vignae BR3299 Isolate Unclassified
8 2791355199
9 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
10 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
11 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
12 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
13 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
14 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
15 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
16 2906643746 Bradyrhizobium genosp. SA-3 Rp7b Isolate Unclassified
17 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified
18 2932410948 Janthinobacterium lividum 2829 Isolate Rhizosphere
19 2932416698 Janthinobacterium lividum 2830 Isolate Rhizosphere
20 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
32 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
39 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
40 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
41 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
49 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
50 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
51 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
52 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
53 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
54 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
55 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
56 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
57 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
58 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
59 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
60 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
63 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
64 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
67 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
68 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
71 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
72 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
73 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
74 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
75 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
76 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
77 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
78 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
79 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
80 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
81 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
82 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
83 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
84 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
85 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
86 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
87 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
88 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
89 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
90 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
91 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
92 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
93 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
97 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
98 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
99 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
103 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
104 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
105 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
106 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
107 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
108 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
109 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
110 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
111 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
112 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
113 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
114 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
115 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
116 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
117 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
118 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
119 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
120 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
121 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
122 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
123 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
124 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
125 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
126 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
127 641522639 Methylobacterium sp. 4-46 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 87.1
Metatranscriptomes 0
Isolates 12.9

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.03
Nodule 7.05
Rhizoplane 12.82
Rhizosphere 50
Stem 0
Stem Tuber 0
Unclassified 14.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070711_100033244 3300005439 Bacteria 3434
2 Ga0068856_100090941 3300005614 Bacteria 3036
3 Ga0068864_100096078 3300005618 Bacteria 2622
4 Ga0068864_100112712 3300005618 Bacteria 2424
5 Ga0081455_10000504 3300005937 Bacteria 50638
6 Ga0081540_1016074 3300005983 Bacteria 4707
7 Ga0075363_100009354 3300006048 Bacteria 4605
8 Ga0075364_10014718 3300006051 Bacteria 4837
9 Ga0075367_10004896 3300006178 Bacteria 6596
10 Ga0075367_10048273 3300006178 Bacteria 2507
11 Ga0075370_10026442 3300006353 Bacteria 3215
12 Ga0075433_10034664 3300006852 Bacteria 4336
13 Ga0075434_100057768 3300006871 Bacteria 3856
14 Ga0099824_1030552 3300006942 Bacteria 2149
15 Ga0099823_1006817 3300006944 Bacteria 11574
16 Ga0105240_10062698 3300009093 Bacteria 4627
17 Ga0105240_10107601 3300009093 Bacteria 3380
18 Ga0114129_10266399 3300009147 Bacteria 2294
19 Ga0105237_10239636 3300009545 Bacteria 1815
20 Ga0105239_10001943 3300010375 Bacteria 26986
21 Ga0163163_10000386 3300014325 Bacteria 41910
22 Ga0163163_10003325 3300014325 Bacteria 13638
23 Ga0157379_10060807 3300014968 Bacteria 3378
24 Ga0182006_1000006 3300015261 Bacteria 555811
25 Ga0213876_10000892 3300021384 Bacteria 19922
26 Ga0209675_1002117 3300025291 Bacteria 10501
27 Ga0207695_10015263 3300025913 Bacteria 9054
28 Ga0207695_10022362 3300025913 Bacteria 7180
29 Ga0207695_10041494 3300025913 Bacteria 4925
30 Ga0207652_10060833 3300025921 Bacteria 3260
31 Ga0207706_10258842 3300025933 Bacteria 1519
32 Ga0207702_10117920 3300026078 Bacteria 2371
33 Ga0207641_10045094 3300026088 Bacteria 3711
34 Ga0207676_10160251 3300026095 Bacteria 1948
35 Ga0209389_1001000 3300027296 Bacteria 18804
36 Ga0209489_106695 3300027361 Bacteria 18198
37 Ga0209813_10005528 3300027866 Bacteria 3072
38 Ga0209813_10007303 3300027866 Bacteria 2750
39 Ga0209813_10008680 3300027866 Bacteria 2576
40 Ga0207428_10196325 3300027907 Bacteria 1520
41 Ga0265328_10033090 3300031239 Bacteria 1917
42 Ga0265325_10005630 3300031241 Bacteria 7712
43 Ga0265339_10010239 3300031249 Bacteria 5835
44 Ga0265342_10088245 3300031712 Bacteria 1781
45 Ga0307413_10036392 3300031824 Bacteria 2833
46 Ga0307410_10076376 3300031852 Unclassified 2338
47 Ga0307406_10002652 3300031901 Bacteria 9746
48 Ga0307407_10042646 3300031903 Bacteria 2545
49 Ga0307412_10003815 3300031911 Bacteria 8383
50 Ga0307415_100034622 3300032126 Bacteria 3291
51 Ga0373960_0040593 3300035121 Bacteria 1344
52 Ga0373962_0017843 3300035242 Unclassified 1842
53 Ga0373947_0022455 3300035725 Bacteria 3661
54 Ga0373947_0158576 3300035725 Bacteria 1462
55 Ga0395900_0026279 3300037418 Bacteria 5962
56 Ga0436364_0672500 3300037853 Bacteria 1175
57 Ga0395901_0351827 3300038443 Bacteria 1520
58 Ga0436365_0409866 3300039437 Bacteria 83836
59 Ga0436361_0253307 3300039447 Bacteria 2090
60 Ga0436361_0487628 3300039447 Bacteria 1765
61 Ga0436361_0734089 3300039447 Bacteria 2469
62 Ga0436363_0918476 3300039450 Bacteria 2412
63 Ga0436363_1396037 3300039450 Bacteria 3884
64 Ga0439432_010399 3300042006 Bacteria 3223
65 Ga0466959_0053020 3300045049 Bacteria 2967
66 Ga0495590_0001072 3300046457 Bacteria 12054
67 Ga0495638_0000756 3300046460 Bacteria 34408
68 Ga0495605_0026592 3300046474 Bacteria 3007
69 Ga0495606_0152486 3300046507 Bacteria 1355
70 Ga0495610_0017162 3300046512 Bacteria 4134
71 Ga0495631_0035821 3300046518 Bacteria 2218
72 Ga0495632_0003745 3300046519 Bacteria 10644
73 Ga0495643_0002076 3300046522 Bacteria 16576
74 Ga0495652_0013476 3300046529 Bacteria 7360
75 Ga0495609_0013405 3300046538 Bacteria 3872
76 Ga0495597_0010139 3300046542 Bacteria 4616
77 Ga0495625_0000382 3300046660 Bacteria 67633
78 Ga0495599_0084438 3300046678 Bacteria 1983
79 Ga0495669_0019868 3300046684 Bacteria 2901
80 Ga0495624_0160669 3300046690 Bacteria 1373
81 Ga0495671_0031318 3300046692 Bacteria 2720
82 Ga0495649_0000970 3300046694 Bacteria 22641
83 Ga0495674_0049437 3300047319 Bacteria 3716
84 Ga0495683_0012255 3300047323 Bacteria 4503
85 Ga0495673_0034960 3300047469 Bacteria 2320
86 Ga0495686_0019292 3300047472 Bacteria 4558
87 Ga0496101_0182388 3300048904 Bacteria 1617
88 Ga0496104_0000679 3300048907 Bacteria 29287
89 Ga0496104_0013004 3300048907 Bacteria 7494
90 Ga0496104_0183833 3300048907 Bacteria 2001
91 Ga0496105_0000905 3300048908 Bacteria 20203
92 Ga0496105_0017247 3300048908 Bacteria 5784
93 Ga0496106_0122508 3300048909 Bacteria 2034
94 Ga0496106_0127335 3300048909 Unclassified 1995
95 Ga0496108_0001099 3300048911 Bacteria 21118
96 Ga0496109_0002053 3300048912 Bacteria 16697
97 Ga0496109_0067221 3300048912 Bacteria 3283
98 Ga0496110_0004104 3300048913 Bacteria 11246
99 Ga0496112_0012890 3300048915 Bacteria 7697
100 Ga0496112_0071880 3300048915 Bacteria 3420
101 Ga0496113_0003655 3300048916 Bacteria 9252
102 Ga0496113_0261195 3300048916 Bacteria 1383
103 Ga0496114_0123733 3300048917 Bacteria 2227
104 Ga0496115_0004731 3300048918 Bacteria 9875
105 Ga0496115_0096107 3300048918 Bacteria 2426
106 Ga0496115_0102606 3300048918 Bacteria 2346
107 Ga0496117_0000001 3300048920 Bacteria 2526244
108 Ga0496117_0017251 3300048920 Bacteria 6039
109 Ga0496118_0000002 3300048921 Bacteria 1690764
110 Ga0496118_0013656 3300048921 Bacteria 7665
111 Ga0496121_0077950 3300048924 Bacteria 2636
112 Ga0496126_0108727 3300048929 Bacteria 2417
113 Ga0495682_0020074 3300049460 Bacteria 2510
114 Ga0501073_0040418 3300049589 Bacteria 3301
115 nmdc:mga03n38_19768_c1 3300050490 Bacteria 2681
116 nmdc:mga00v17_86807_c1 3300050491 Bacteria 1961
117 nmdc:mga0yw44_45521_c1 3300050492 Bacteria 2631
118 nmdc:mga0yw44_62844_c1 3300050492 Bacteria 2281
119 nmdc:mga0k408_19436_c1 3300050493 Bacteria 3797
120 nmdc:mga06z11_3502_c1 3300050494 Bacteria 6077
121 nmdc:mga06z11_53124_c1 3300050494 Bacteria 2082
122 nmdc:mga06z11_88038_c1 3300050494 Bacteria 1681
123 nmdc:mga04h51_3712_c1 3300050495 Bacteria 3736
124 nmdc:mga04h51_8143_c1 3300050495 Bacteria 2797
125 nmdc:mga07m45_44263_c1 3300050496 Bacteria 2498
126 nmdc:mga07m45_7891_c2 3300050496 Bacteria 4186
127 nmdc:mga05p37_23528_c1 3300050507 Bacteria 7475
128 nmdc:mga0n895_27594_c1 3300050512 Bacteria 5396
129 nmdc:mga0rr50_30992_c1 3300050513 Bacteria 3792
130 Ga0495601_0022487 3300053077 Bacteria 3871
131 Ga0495619_0039729 3300053085 Bacteria 3072
132 Ga0500641_0018319 3300053096 Bacteria 2633
133 Ga0500562_020421 3300053108 Bacteria 1719
134 Ga0500593_011335 3300053117 Bacteria 3762
135 Ga0500636_0041624 3300053177 Bacteria 2717

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049589 Ga0501073_0040418 Ga0501073_0040418_842_1972 330
2 3300015261 Ga0182006_1000006 Ga0182006_100000669 361
3 3300048920 Ga0496117_0000001 Ga0496117_0000001_190789_191886 361
4 3300048921 Ga0496118_0000002 Ga0496118_0000002_190789_191886 361
5 3300009147 Ga0114129_10266399 Ga0114129_102663991 362
6 3300037853 Ga0436364_0672500 Ga0436364_0672500_47_1144 362
7 3300050507 nmdc:mga05p37_23528_c1 nmdc:mga05p37_23528_c1_116_1219 362
8 3300009093 Ga0105240_10062698 Ga0105240_100626982 363
9 3300010375 Ga0105239_10001943 Ga0105239_1000194328 363
10 3300025913 Ga0207695_10041494 Ga0207695_100414943 363
11 3300048920 Ga0496117_0017251 Ga0496117_0017251_1161_2258 363
12 3300048921 Ga0496118_0013656 Ga0496118_0013656_639_1736 363
13 iso_pu_bacteria 2842333319 2842337286 363
14 iso_pu_bacteria 2932410948 2932414355 363
15 iso_pu_bacteria 2932416698 2932416964 363
16 3300005983 Ga0081540_1016074 Ga0081540_10160746 365
17 3300031852 Ga0307410_10076376 Ga0307410_100763762 365
18 3300031901 Ga0307406_10002652 Ga0307406_100026523 365
19 3300031903 Ga0307407_10042646 Ga0307407_100426462 365
20 3300031911 Ga0307412_10003815 Ga0307412_100038152 365
21 3300032126 Ga0307415_100034622 Ga0307415_1000346223 365
22 3300039447 Ga0436361_0487628 Ga0436361_0487628_187_1305 365
23 3300042006 Ga0439432_010399 Ga0439432_010399_330_1565 365
24 3300046457 Ga0495590_0001072 Ga0495590_0001072_1186_2283 365
25 3300046460 Ga0495638_0000756 Ga0495638_0000756_3673_4770 365
26 3300046474 Ga0495605_0026592 Ga0495605_0026592_1086_2183 365
27 3300046512 Ga0495610_0017162 Ga0495610_0017162_2802_3899 365
28 3300046518 Ga0495631_0035821 Ga0495631_0035821_642_1739 365
29 3300046519 Ga0495632_0003745 Ga0495632_0003745_5159_6256 365
30 3300046522 Ga0495643_0002076 Ga0495643_0002076_9584_10681 365
31 3300046538 Ga0495609_0013405 Ga0495609_0013405_600_1697 365
32 3300046542 Ga0495597_0010139 Ga0495597_0010139_2556_3653 365
33 3300046660 Ga0495625_0000382 Ga0495625_0000382_7856_8953 365
34 3300046684 Ga0495669_0019868 Ga0495669_0019868_964_2061 365
35 3300046692 Ga0495671_0031318 Ga0495671_0031318_206_1303 365
36 3300046694 Ga0495649_0000970 Ga0495649_0000970_16613_17710 365
37 3300047323 Ga0495683_0012255 Ga0495683_0012255_1597_2694 365
38 3300047469 Ga0495673_0034960 Ga0495673_0034960_844_1941 365
39 3300049460 Ga0495682_0020074 Ga0495682_0020074_1315_2412 365
40 3300053108 Ga0500562_020421 Ga0500562_020421_558_1655 365
41 3300053117 Ga0500593_011335 Ga0500593_011335_714_1811 365
42 3300006178 Ga0075367_10004896 Ga0075367_100048964 366
43 3300009093 Ga0105240_10107601 Ga0105240_101076011 366
44 3300009545 Ga0105237_10239636 Ga0105237_102396362 366
45 3300025913 Ga0207695_10015263 Ga0207695_1001526314 366
46 3300025913 Ga0207695_10022362 Ga0207695_100223626 366
47 3300027866 Ga0209813_10007303 Ga0209813_100073033 366
48 3300037418 Ga0395900_0026279 Ga0395900_0026279_1489_2592 366
49 3300039447 Ga0436361_0253307 Ga0436361_0253307_291_1505 366
50 3300048909 Ga0496106_0127335 Ga0496106_0127335_364_1464 366
51 3300050494 nmdc:mga06z11_3502_c1 nmdc:mga06z11_3502_c1_2172_3287 366
52 3300050495 nmdc:mga04h51_3712_c1 nmdc:mga04h51_3712_c1_817_1932 366
53 3300050496 nmdc:mga07m45_7891_c2 nmdc:mga07m45_7891_c2_2476_3594 366
54 3300031239 Ga0265328_10033090 Ga0265328_100330902 367
55 3300031249 Ga0265339_10010239 Ga0265339_100102396 367
56 3300031712 Ga0265342_10088245 Ga0265342_100882452 367
57 3300038443 Ga0395901_0351827 Ga0395901_0351827_260_1384 367
58 3300047472 Ga0495686_0019292 Ga0495686_0019292_1192_2403 367
59 3300045049 Ga0466959_0053020 Ga0466959_0053020_286_1392 368
60 3300050492 nmdc:mga0yw44_45521_c1 nmdc:mga0yw44_45521_c1_738_1949 368
61 iso_pu_bacteria 2846952575 2846956188 368
62 iso_pu_bacteria 2848858292 2848861821 368
63 3300025921 Ga0207652_10060833 Ga0207652_100608334 369
64 3300025933 Ga0207706_10258842 Ga0207706_102588422 370
65 3300031824 Ga0307413_10036392 Ga0307413_100363922 370
66 3300005618 Ga0068864_100112712 Ga0068864_1001127122 371
67 3300006852 Ga0075433_10034664 Ga0075433_100346643 371
68 3300006871 Ga0075434_100057768 Ga0075434_1000577685 371
69 3300027907 Ga0207428_10196325 Ga0207428_101963251 371
70 3300031241 Ga0265325_10005630 Ga0265325_100056305 371
71 3300035121 Ga0373960_0040593 Ga0373960_0040593_37_1155 371
72 3300035242 Ga0373962_0017843 Ga0373962_0017843_319_1437 371
73 3300039450 Ga0436363_1396037 Ga0436363_1396037_1625_2740 371
74 3300050512 nmdc:mga0n895_27594_c1 nmdc:mga0n895_27594_c1_2119_3237 371
75 3300050513 nmdc:mga0rr50_30992_c1 nmdc:mga0rr50_30992_c1_1008_2126 371
76 iso_pu_bacteria 2513237092 2513625213 371
77 3300035725 Ga0373947_0158576 Ga0373947_0158576_273_1391 372
78 3300014968 Ga0157379_10060807 Ga0157379_100608074 373
79 3300025291 Ga0209675_1002117 Ga0209675_100211712 373
80 3300048924 Ga0496121_0077950 Ga0496121_0077950_853_2136 373
81 3300048929 Ga0496126_0108727 Ga0496126_0108727_410_1693 373
82 3300053177 Ga0500636_0041624 Ga0500636_0041624_1125_2246 373
83 3300006942 Ga0099824_1030552 Ga0099824_10305521 374
84 3300006944 Ga0099823_1006817 Ga0099823_100681712 374
85 3300027296 Ga0209389_1001000 Ga0209389_100100018 374
86 3300027361 Ga0209489_106695 Ga0209489_10669518 374
87 3300046529 Ga0495652_0013476 Ga0495652_0013476_1676_2800 374
88 3300046678 Ga0495599_0084438 Ga0495599_0084438_743_1867 374
89 3300048907 Ga0496104_0183833 Ga0496104_0183833_569_1693 374
90 3300053077 Ga0495601_0022487 Ga0495601_0022487_1862_2986 374
91 iso_pu_bacteria 2513237092 2513627685 374
92 iso_pu_bacteria 2906643746 2906649512 375
93 3300046690 Ga0495624_0160669 Ga0495624_0160669_129_1259 376
94 iso_pu_bacteria 2508501050 2508734175 376
95 iso_pu_bacteria 2773857925 2774869250 376
96 iso_pu_bacteria 2882456835 2882457374 376
97 3300014325 Ga0163163_10000386 Ga0163163_1000038618 377
98 3300027866 Ga0209813_10008680 Ga0209813_100086803 377
99 3300035725 Ga0373947_0022455 Ga0373947_0022455_24_1160 377
100 3300048907 Ga0496104_0000679 Ga0496104_0000679_8951_10087 377
101 3300048908 Ga0496105_0000905 Ga0496105_0000905_6366_7502 377
102 3300048909 Ga0496106_0122508 Ga0496106_0122508_472_1608 377
103 3300048911 Ga0496108_0001099 Ga0496108_0001099_1202_2338 377
104 3300048912 Ga0496109_0002053 Ga0496109_0002053_845_1981 377
105 3300048913 Ga0496110_0004104 Ga0496110_0004104_640_1776 377
106 3300048915 Ga0496112_0012890 Ga0496112_0012890_640_1776 377
107 3300048916 Ga0496113_0003655 Ga0496113_0003655_2669_3805 377
108 3300048917 Ga0496114_0123733 Ga0496114_0123733_972_2108 377
109 3300048918 Ga0496115_0004731 Ga0496115_0004731_3476_4612 377
110 3300050495 nmdc:mga04h51_8143_c1 nmdc:mga04h51_8143_c1_844_2169 377
111 iso_pu_bacteria 2721755755 2723847890 377
112 iso_pu_bacteria 2791355199 2793082962 377
113 iso_pu_bacteria 2889033259 2889036202 377
114 iso_pu_bacteria 2919046199 2919050931 377
115 3300039437 Ga0436365_0409866 Ga0436365_0409866_44911_46047 378
116 3300039450 Ga0436363_0918476 Ga0436363_0918476_1001_2137 378
117 3300050494 nmdc:mga06z11_53124_c1 nmdc:mga06z11_53124_c1_809_1954 378
118 iso_pu_bacteria 2738541281 2738744775 378
119 iso_pu_bacteria 2738543032 2739354005 378
120 3300021384 Ga0213876_10000892 Ga0213876_1000089222 379
121 3300047319 Ga0495674_0049437 Ga0495674_0049437_1279_2421 379
122 3300053085 Ga0495619_0039729 Ga0495619_0039729_421_1563 379
123 3300005614 Ga0068856_100090941 Ga0068856_1000909412 380
124 3300005618 Ga0068864_100096078 Ga0068864_1000960784 380
125 3300014325 Ga0163163_10003325 Ga0163163_1000332511 380
126 3300026078 Ga0207702_10117920 Ga0207702_101179202 380
127 3300026095 Ga0207676_10160251 Ga0207676_101602512 380
128 3300046507 Ga0495606_0152486 Ga0495606_0152486_142_1293 380
129 3300048904 Ga0496101_0182388 Ga0496101_0182388_127_1269 380
130 3300048907 Ga0496104_0013004 Ga0496104_0013004_3439_4581 380
131 3300048908 Ga0496105_0017247 Ga0496105_0017247_2591_3733 380
132 3300048912 Ga0496109_0067221 Ga0496109_0067221_332_1474 380
133 3300048915 Ga0496112_0071880 Ga0496112_0071880_523_1665 380
134 3300048918 Ga0496115_0096107 Ga0496115_0096107_98_1288 380
135 iso_pu_bacteria 2904530477 2904531436 380
136 3300005937 Ga0081455_10000504 Ga0081455_1000050436 381
137 3300026088 Ga0207641_10045094 Ga0207641_100450943 381
138 3300048918 Ga0496115_0102606 Ga0496115_0102606_887_2050 381
139 3300053096 Ga0500641_0018319 Ga0500641_0018319_767_1975 381
140 iso_pu_bacteria 2545555834 2545674851 381
141 iso_pu_bacteria 2881101125 2881101304 381
142 iso_pu_bacteria 641522639 641645181 381
143 3300039447 Ga0436361_0734089 Ga0436361_0734089_1129_2307 382
144 3300050490 nmdc:mga03n38_19768_c1 nmdc:mga03n38_19768_c1_1328_2539 384
145 3300050491 nmdc:mga00v17_86807_c1 nmdc:mga00v17_86807_c1_446_1657 384
146 3300050492 nmdc:mga0yw44_62844_c1 nmdc:mga0yw44_62844_c1_659_1870 384
147 3300050493 nmdc:mga0k408_19436_c1 nmdc:mga0k408_19436_c1_1259_2470 384
148 3300050494 nmdc:mga06z11_88038_c1 nmdc:mga06z11_88038_c1_394_1605 384
149 3300050496 nmdc:mga07m45_44263_c1 nmdc:mga07m45_44263_c1_894_2105 384
150 3300006048 Ga0075363_100009354 Ga0075363_1000093548 385
151 3300006051 Ga0075364_10014718 Ga0075364_100147182 385
152 3300006178 Ga0075367_10048273 Ga0075367_100482732 385
153 3300006353 Ga0075370_10026442 Ga0075370_100264424 385
154 3300027866 Ga0209813_10005528 Ga0209813_100055283 385
155 3300005439 Ga0070711_100033244 Ga0070711_1000332444 387
156 3300048916 Ga0496113_0261195 Ga0496113_0261195_88_1251 387

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21338

Top1B_N_bact

Bacterial DNA topoisomerase IB, N-terminal domain

47

95

0.99

PF01028

Topoisom_I

Eukaryotic DNA topoisomerase I, catalytic core

105

328

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
1a35-assembly1.cif.gz_A human topoisomerase i/dna complex 0.7989 83 318
1rr8-assembly1.cif.gz_C structural mechanisms of camptothecin resistance by mutations in human topoisomerase i 0.7854 68 321
2b9s-assembly1.cif.gz_A crystal structure of heterodimeric l. donovani topoisomerase i-vanadate-dna complex 0.7842 83 301
2h7g-assembly1.cif.gz_X structure of variola topoisomerase non-covalently bound to dna 0.7696 34 355
2h7g-assembly1.cif.gz_X structure of variola topoisomerase non-covalently bound to dna 0.7609 34 355
ID Description Score Start End Superfamily
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9398 135 250 3.90.15.10
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9171 135 250 3.90.15.10
2f4qA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.8993 135 250 3.90.15.10
af_A0A2R8S0L3_185_312_3.90.15.10 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.8822 104 208 3.90.15.10
2f4qA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.8754 135 250 3.90.15.10
ID Description Score Start End GO Terms
AF-A0A2A2KIQ3-F1-model_v4 DNA topoisomerase I catalytic core eukaryotic-type domain-containing protein 0.9756 117 237 GO:0003677
GO:0003917
GO:0006265
AF-A0A4Q6BFE6-F1-model_v4 DNA topoisomerase IB 0.9738 178 367 GO:0003677
GO:0003917
GO:0006265
AF-A0A7W0YWZ9-F1-model_v4 DNA topoisomerase IB 0.9731 24 88 GO:0016853
AF-A0A1H8A4M9-F1-model_v4 DNA topoisomerase IB N-terminal domain-containing protein 0.9726 24 100
AF-A0A529I0I0-F1-model_v4 DNA topoisomerase (EC 5.6.2.1) 0.971 109 356 GO:0003677
GO:0003917
GO:0006265

Feature Viewer

pLDDT pTM Quality
84.17 0.77 High
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Predicted Structure (AlphaFold2)

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