F223843

General Info

Members Datasets Scaffolds Average Seq Length
156 122 312 332

Family's Representative Sequence

Representative Sequence 3300005293|Ga0065715_10128903|Ga0065715_101289032
Length 361
Sequence MALVGECQPLARSKNPVRSSLPWHSYPMHIGKSYRPIEFLLWTRRKAYLLAGIAIVVAGLYQILGWHWLAIPWPVLALLGTAASFIVGFKNSQTYNRTVEAQQIWSSITGTSRYWGLISRDFTAGTDAAAALVNRHLAWLTAVRYQLRTPRIWEAATDASNAEYREKLFEVPEQKVSLEVELGKYLPRDTVADLISGGSIPIALMSLQSRAIHELFASQQMPVLHHTEMQKTLKDLIDQHARAERIKNFPYPRQYAIINSMFVWAFALLLPFGVVKEFAQLSGPGFMQGQMGWLAVPFSVLVAWMYVAIDQVGASTENPFEGGANDVPITHLCRTIEVELRTMLGERDLPPLPAPANHIVL

Samples

Sample ID Description Type Environment
1 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
19 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
22 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
24 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
28 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300025271 Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
33 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
48 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
49 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
50 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
51 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
52 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
53 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
54 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
55 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
58 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
59 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
60 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
61 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
62 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
63 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
64 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
65 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
66 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
67 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
68 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
69 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
70 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
71 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
72 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
73 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
74 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
75 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
76 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
77 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
78 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
79 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
80 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
81 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
82 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
83 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
84 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
85 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
86 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
87 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
90 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
91 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
92 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
93 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
94 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
95 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
96 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
97 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
98 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
99 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
100 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
103 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
104 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
105 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
106 2643221556 Massilia sp. Root1485 Isolate Unclassified
107 2643221569 Achromobacter sp. Root565 Isolate Unclassified
108 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
109 2643221621 Achromobacter sp. Root83 Isolate Unclassified
110 2643221645 Massilia sp. Root351 Isolate Unclassified
111 2643221684 Massilia sp. Root133 Isolate Unclassified
112 2739367651 Pedobacter sp. OK291 Isolate Unclassified
113 2855730933 Achromobacter sp. HZ28 Isolate Nodule
114 2855767633 Achromobacter sp. HZ34 Isolate Nodule
115 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
116 2858950400 Achromobacter sp. K91 Isolate Unclassified
117 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
118 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
119 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
120 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
121 2941479691
122 8047673197 Telluria mixta LMG 11547 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.46
Metatranscriptomes 0
Isolates 11.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.77
Nodule 1.92
Rhizoplane 3.21
Rhizosphere 69.87
Stem 0
Stem Tuber 0
Unclassified 1.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065715_10128903 3300005293 Bacteria 2056
2 MBSR1b_contig_5636788 2162886012 Bacteria 2166
3 JGI24740J21852_10000518 3300001979 Bacteria 16597
4 JGI25151J46595_10001455 3300003187 Bacteria 16063
5 rootH1_10090648 3300003316 Bacteria 3975
6 rootH2_10126394 3300003320 Bacteria 1489
7 Ga0070670_100014482 3300005331 Bacteria 6772
8 Ga0070670_100240596 3300005331 Bacteria 1576
9 Ga0070660_100026084 3300005339 Bacteria 4350
10 Ga0070669_100208807 3300005353 Bacteria 1539
11 Ga0070675_100036290 3300005354 Bacteria 4010
12 Ga0070674_100169751 3300005356 Bacteria 1662
13 Ga0070678_100097345 3300005456 Bacteria 2272
14 Ga0068853_100473537 3300005539 Bacteria 1180
15 Ga0070672_100082673 3300005543 Bacteria 2576
16 Ga0068861_100013497 3300005719 Bacteria 5718
17 Ga0068862_100024297 3300005844 Bacteria 5084
18 Ga0068862_100044591 3300005844 Bacteria 3783
19 Ga0075365_10106885 3300006038 Bacteria 1921
20 Ga0075366_10196205 3300006195 Bacteria 1227
21 Ga0075370_10079427 3300006353 Bacteria 1884
22 Ga0075428_100250220 3300006844 Bacteria 1910
23 Ga0068865_100003181 3300006881 Bacteria 9841
24 Ga0111539_10084210 3300009094 Bacteria 3739
25 Ga0105249_10018930 3300009553 Bacteria 6137
26 Ga0157370_10003665 3300013104 Bacteria 17944
27 Ga0157369_10424123 3300013105 Bacteria 1379
28 Ga0163162_10011873 3300013306 Bacteria 8496
29 Ga0163162_10047617 3300013306 Bacteria 4296
30 Ga0163162_10349073 3300013306 Unclassified 1612
31 Ga0157375_10158409 3300013308 Bacteria 2405
32 Ga0157380_10005480 3300014326 Bacteria 8865
33 Ga0157380_10164538 3300014326 Bacteria 1931
34 Ga0163161_10027132 3300017792 Bacteria 4061
35 Ga0163161_10050472 3300017792 Bacteria 3011
36 Ga0207666_1002050 3300025271 Bacteria 2408
37 Ga0209676_1007087 3300025292 Bacteria 5366
38 Ga0209025_1000026 3300025294 Bacteria 519850
39 Ga0209050_1004985 3300025298 Bacteria 8640
40 Ga0207657_10002915 3300025919 Bacteria 18364
41 Ga0207681_10107359 3300025923 Bacteria 2024
42 Ga0207650_10038181 3300025925 Bacteria 3505
43 Ga0207650_10189642 3300025925 Bacteria 1642
44 Ga0207690_10048366 3300025932 Bacteria 2827
45 Ga0207709_10122874 3300025935 Bacteria 1756
46 Ga0207669_10180253 3300025937 Bacteria 1513
47 Ga0207691_10039350 3300025940 Bacteria 4375
48 Ga0207651_10356425 3300025960 Bacteria 1233
49 Ga0207639_10351269 3300026041 Bacteria 1317
50 Ga0207641_10029431 3300026088 Bacteria 4542
51 Ga0207675_100008461 3300026118 Bacteria 9694
52 Ga0207683_10126976 3300026121 Bacteria 2292
53 Ga0268265_10021755 3300028380 Bacteria 4497
54 Ga0307515_10029999 3300028794 Bacteria 9162
55 Ga0307408_100009352 3300031548 Bacteria 6460
56 Ga0307408_100010220 3300031548 Bacteria 6192
57 Ga0307406_10003760 3300031901 Bacteria 8252
58 Ga0307407_10291842 3300031903 Bacteria 1134
59 Ga0307412_10011300 3300031911 Bacteria 5166
60 Ga0307412_10337218 3300031911 Bacteria 1205
61 Ga0307415_100280106 3300032126 Bacteria 1371
62 Ga0373937_0169887 3300036401 Bacteria 2046
63 Ga0395900_0057459 3300037418 Bacteria 4005
64 Ga0395900_0068698 3300037418 Bacteria 3641
65 Ga0395900_0131104 3300037418 Bacteria 2569
66 Ga0395898_0285774 3300037466 Bacteria 1573
67 Ga0395898_0487722 3300037466 Bacteria 1172
68 Ga0395905_0114049 3300037471 Bacteria 2539
69 Ga0395905_0118393 3300037471 Bacteria 2489
70 Ga0395901_0027348 3300038443 Bacteria 5859
71 Ga0395901_0064146 3300038443 Bacteria 3823
72 Ga0395901_0160494 3300038443 Bacteria 2361
73 Ga0439439_0024240 3300041406 Bacteria 1522
74 Ga0495617_000641 3300046452 Bacteria 17544
75 Ga0495590_0000129 3300046457 Bacteria 44482
76 Ga0495650_0017672 3300046471 Bacteria 3568
77 Ga0495605_0000684 3300046474 Bacteria 25383
78 Ga0495584_0001131 3300046491 Bacteria 16524
79 Ga0495594_0209283 3300046499 Bacteria 1112
80 Ga0495596_0007111 3300046500 Bacteria 5069
81 Ga0495583_0011857 3300046506 Bacteria 4978
82 Ga0495606_0014178 3300046507 Bacteria 6239
83 Ga0495606_0055756 3300046507 Bacteria 2554
84 Ga0495610_0013721 3300046512 Bacteria 4797
85 Ga0495616_0008231 3300046513 Bacteria 6190
86 Ga0495616_0008559 3300046513 Bacteria 6048
87 Ga0495616_0021084 3300046513 Bacteria 3535
88 Ga0495632_0000065 3300046519 Bacteria 116086
89 Ga0495637_0001892 3300046520 Bacteria 11939
90 Ga0495643_0009374 3300046522 Bacteria 6087
91 Ga0495648_0005582 3300046524 Bacteria 10433
92 Ga0495648_0044092 3300046524 Bacteria 2787
93 Ga0495597_0001949 3300046542 Bacteria 13906
94 Ga0495656_0024717 3300046615 Bacteria 2375
95 Ga0495661_0003648 3300046665 Bacteria 11322
96 Ga0495661_0008704 3300046665 Bacteria 7008
97 Ga0495661_0019323 3300046665 Bacteria 4467
98 Ga0495661_0109044 3300046665 Bacteria 1546
99 Ga0495588_0000438 3300046674 Bacteria 21238
100 Ga0495671_0005829 3300046692 Bacteria 7175
101 Ga0495649_0037489 3300046694 Bacteria 2661
102 Ga0495589_0001144 3300046794 Bacteria 15770
103 Ga0495589_0001711 3300046794 Bacteria 12485
104 Ga0495660_0000057 3300046810 Bacteria 133310
105 Ga0495660_0052168 3300046810 Bacteria 2223
106 Ga0495672_0000195 3300047320 Bacteria 86608
107 Ga0495672_0003714 3300047320 Bacteria 12870
108 Ga0495687_000759 3300047443 Bacteria 34915
109 Ga0495687_064262 3300047443 Bacteria 1499
110 Ga0495677_0000255 3300047445 Bacteria 23352
111 Ga0495677_0024015 3300047445 Unclassified 2212
112 Ga0495673_0000359 3300047469 Bacteria 55990
113 Ga0495686_0010253 3300047472 Bacteria 6671
114 Ga0495626_0000011 3300048091 Bacteria 260928
115 Ga0496102_0091882 3300048905 Bacteria 2810
116 Ga0496102_0345049 3300048905 Bacteria 1402
117 Ga0496111_0141595 3300048914 Bacteria 1782
118 Ga0496113_0291862 3300048916 Bacteria 1305
119 Ga0496114_0130438 3300048917 Bacteria 2170
120 Ga0496118_0011760 3300048921 Bacteria 8505
121 Ga0496119_0014385 3300048922 Bacteria 6199
122 Ga0496120_0002913 3300048923 Bacteria 16344
123 Ga0496121_0076114 3300048924 Bacteria 2677
124 Ga0496122_0008702 3300048925 Bacteria 10868
125 Ga0496122_0112712 3300048925 Bacteria 1780
126 Ga0496122_0140981 3300048925 Bacteria 1508
127 Ga0496123_0001273 3300048926 Bacteria 36130
128 Ga0496124_0043761 3300048927 Bacteria 3847
129 Ga0496124_0075955 3300048927 Bacteria 2775
130 Ga0496124_0079975 3300048927 Bacteria 2691
131 Ga0496124_0217991 3300048927 Bacteria 1437
132 Ga0496124_0353332 3300048927 Bacteria 1039
133 Ga0496125_0000105 3300048928 Bacteria 200717
134 Ga0496126_0010668 3300048929 Bacteria 9604
135 Ga0501034_0002822 3300049571 Bacteria 20301
136 Ga0501242_003917 3300049674 Bacteria 1634
137 nmdc:mga0yw44_104735_c1 3300050492 Bacteria 1806
138 nmdc:mga07m45_8685_c1 3300050496 Bacteria 5233
139 2515685457 2515154122 Bacteria 8609520
140 2643800486 2643221556 Bacteria 7251154
141 2643860758 2643221569 Bacteria 6064337
142 2644009935 2643221600 Bacteria 5530138
143 2644120550 2643221621 Bacteria 6212786
144 2644250370 2643221645 Bacteria 7207331
145 2644470395 2643221684 Bacteria 7145183
146 2739591574 2739367651 Bacteria 6359826
147 2855732320 2855730933 Bacteria 7047938
148 2855769028 2855767633 Bacteria 7049357
149 2857540318 2857537821 Bacteria 5248181
150 2858956277 2858950400 Bacteria 6783797
151 2902688323 2902682994 Bacteria 8951596
152 2904559343 2904555929 Bacteria 5218588
153 2929153368 2929150217 Bacteria 5462483
154 2939633983 2939631187 Bacteria 6118131
155 2941483751
156 8047678362 8047673197 Bacteria 7395230
157 Ga0065715_10128903
158 MBSR1b_contig_5636788
159 JGI24740J21852_10000518
160 JGI25151J46595_10001455
161 rootH1_10090648
162 rootH2_10126394
163 Ga0070670_100014482
164 Ga0070670_100240596
165 Ga0070660_100026084
166 Ga0070669_100208807
167 Ga0070675_100036290
168 Ga0070674_100169751
169 Ga0070678_100097345
170 Ga0068853_100473537
171 Ga0070672_100082673
172 Ga0068861_100013497
173 Ga0068862_100024297
174 Ga0068862_100044591
175 Ga0075365_10106885
176 Ga0075366_10196205
177 Ga0075370_10079427
178 Ga0075428_100250220
179 Ga0068865_100003181
180 Ga0111539_10084210
181 Ga0105249_10018930
182 Ga0157370_10003665
183 Ga0157369_10424123
184 Ga0163162_10011873
185 Ga0163162_10047617
186 Ga0163162_10349073
187 Ga0157375_10158409
188 Ga0157380_10005480
189 Ga0157380_10164538
190 Ga0163161_10027132
191 Ga0163161_10050472
192 Ga0207666_1002050
193 Ga0209676_1007087
194 Ga0209025_1000026
195 Ga0209050_1004985
196 Ga0207657_10002915
197 Ga0207681_10107359
198 Ga0207650_10038181
199 Ga0207650_10189642
200 Ga0207690_10048366
201 Ga0207709_10122874
202 Ga0207669_10180253
203 Ga0207691_10039350
204 Ga0207651_10356425
205 Ga0207639_10351269
206 Ga0207641_10029431
207 Ga0207675_100008461
208 Ga0207683_10126976
209 Ga0268265_10021755
210 Ga0307515_10029999
211 Ga0307408_100009352
212 Ga0307408_100010220
213 Ga0307406_10003760
214 Ga0307407_10291842
215 Ga0307412_10011300
216 Ga0307412_10337218
217 Ga0307415_100280106
218 Ga0373937_0169887
219 Ga0395900_0057459
220 Ga0395900_0068698
221 Ga0395900_0131104
222 Ga0395898_0285774
223 Ga0395898_0487722
224 Ga0395905_0114049
225 Ga0395905_0118393
226 Ga0395901_0027348
227 Ga0395901_0064146
228 Ga0395901_0160494
229 Ga0439439_0024240
230 Ga0495617_000641
231 Ga0495590_0000129
232 Ga0495650_0017672
233 Ga0495605_0000684
234 Ga0495584_0001131
235 Ga0495594_0209283
236 Ga0495596_0007111
237 Ga0495583_0011857
238 Ga0495606_0014178
239 Ga0495606_0055756
240 Ga0495610_0013721
241 Ga0495616_0008231
242 Ga0495616_0008559
243 Ga0495616_0021084
244 Ga0495632_0000065
245 Ga0495637_0001892
246 Ga0495643_0009374
247 Ga0495648_0005582
248 Ga0495648_0044092
249 Ga0495597_0001949
250 Ga0495656_0024717
251 Ga0495661_0003648
252 Ga0495661_0008704
253 Ga0495661_0019323
254 Ga0495661_0109044
255 Ga0495588_0000438
256 Ga0495671_0005829
257 Ga0495649_0037489
258 Ga0495589_0001144
259 Ga0495589_0001711
260 Ga0495660_0000057
261 Ga0495660_0052168
262 Ga0495672_0000195
263 Ga0495672_0003714
264 Ga0495687_000759
265 Ga0495687_064262
266 Ga0495677_0000255
267 Ga0495677_0024015
268 Ga0495673_0000359
269 Ga0495686_0010253
270 Ga0495626_0000011
271 Ga0496102_0091882
272 Ga0496102_0345049
273 Ga0496111_0141595
274 Ga0496113_0291862
275 Ga0496114_0130438
276 Ga0496118_0011760
277 Ga0496119_0014385
278 Ga0496120_0002913
279 Ga0496121_0076114
280 Ga0496122_0008702
281 Ga0496122_0112712
282 Ga0496122_0140981
283 Ga0496123_0001273
284 Ga0496124_0043761
285 Ga0496124_0075955
286 Ga0496124_0079975
287 Ga0496124_0217991
288 Ga0496124_0353332
289 Ga0496125_0000105
290 Ga0496126_0010668
291 Ga0501034_0002822
292 Ga0501242_003917
293 nmdc:mga0yw44_104735_c1
294 nmdc:mga07m45_8685_c1
295 2515685457
296 2643800486
297 2643860758
298 2644009935
299 2644120550
300 2644250370
301 2644470395
302 2739591574
303 2855732320
304 2855769028
305 2857540318
306 2858956277
307 2902688323
308 2904559343
309 2929153368
310 2939633983
311 2941483751
312 8047678362

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01062

Bestrophin

Bestrophin, RFP-TM, chloride channel

41

341

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
6iv2-assembly1.cif.gz_A crystal structure of a bacterial bestrophin homolog from klebsiella pneumoniae with a mutation y211a 0.9387 16 319
6iv1-assembly1.cif.gz_B crystal structure of a bacterial bestrophin homolog from klebsiella pneumoniae with a mutation i180t 0.9292 16 314
6iv2-assembly1.cif.gz_A crystal structure of a bacterial bestrophin homolog from klebsiella pneumoniae with a mutation y211a 0.9285 16 319
6ivw-assembly1.cif.gz_A crystal structure of a bacterial bestrophin homolog from klebsiella pneumoniae with a mutation d269a 0.9238 17 319
6ivm-assembly1.cif.gz_D crystal structure of a membrane protein p143a 0.9221 16 319
ID Description Score Start End Superfamily
af_A4I1N6_7_128_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.556 77 215 1.20.140.150
af_A4I1N6_7_128_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.5177 77 215 1.20.140.150
af_A1Z9P3_1388_1576_1.10.287.1490 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.4837 50 242 1.10.287.1490
af_A1Z9P3_1388_1576_1.10.287.1490 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.4454 50 242 1.10.287.1490
2gscA00 Mainly Alpha;Up-down Bundle;de novo design (two linked rop proteins);23S rRNA-intervening sequence 0.4359 104 215 1.20.1440.60
ID Description Score Start End GO Terms
AF-A0A4Q1CNR0-F1-model_v4 Multidrug transporter 0.9748 1 334 GO:0005254
GO:0005886
AF-A0A4Q1CNR0-F1-model_v4 Multidrug transporter 0.9719 1 334 GO:0005254
GO:0005886
AF-A0A0Q7AG90-F1-model_v4 Multidrug transporter 0.9707 1 334 GO:0005254
GO:0005886
AF-A0A316AQ90-F1-model_v4 Putative membrane protein 0.9695 1 334 GO:0005254
GO:0005886
AF-A0A0Q7AG90-F1-model_v4 Multidrug transporter 0.9678 1 334 GO:0005254
GO:0005886

Map