F221815

General Info

Members Datasets Scaffolds Average Seq Length
155 102 155 465

Family's Representative Sequence

Representative Sequence 3300005718|Ga0068866_10009580|Ga0068866_100095802
Length 505
Sequence VSVPGAGSAGSSTRPTTGLVSNSAVCRTDSLSAVTRGYIVHTFGCQMNEHDSERIAGLLEDDGYVAVTDQADADVVVLNTCCIRENADNKLYGTLGWLKPWKEASDGRQIVVAGCLAQKDRDLVRRKAPFVDVVLGTHNVHRAAELVGEARVSGPITEILDEAVLDDQAMFPSALPARRETTYNAWVTIQIGCDNSCAFCIVPAVRGAEISRPFADVIAEVARLADEGVSEVTLLGQNVNSYGRDIQLAARQGGDAEARLRPMFAELLSAVGAIDGIRRVRFTSPHPKDMRADTFAAMAGTAAVCEHLHYPLQSGSDRVLAAMHRGYTAQRYLERLAAGRAAVDDLAVSTDIIVGFPGETDDDFAATLDVVAAAEYDYAYTFVFSPRPGTEAAEMTDRFVEPSVAAERFQRLKVVVERSALAKHEARVGRVEEVLVEGPSKKDPAVLAGRTRQNKLVHFTPPHSLRAGAYATVEITRAAPHHLVGQFVELISQPQHKRRIAVLAG

Samples

Sample ID Description Type Environment
1 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
2 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
3 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
4 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
5 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
6 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
8 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
9 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
10 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
11 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
12 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
13 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
16 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
21 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
22 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
23 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
24 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
25 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
26 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
27 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
28 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
35 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
36 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
37 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
38 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
39 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
40 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
41 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
42 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
43 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
44 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
45 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
46 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
47 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
48 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
49 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
50 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
51 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
52 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
53 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
54 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
55 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
56 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
57 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
58 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
59 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
60 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
61 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
62 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
75 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
76 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
77 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
78 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
79 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
80 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
81 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
82 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
83 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
84 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
85 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
89 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
90 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
91 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
94 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
95 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
96 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
97 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
98 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
99 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
100 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
101 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
102 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.97
Nodule 0
Rhizoplane 5.81
Rhizosphere 78.71
Stem 0
Stem Tuber 0
Unclassified 4.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25407J50210_10004198 3300003373 Bacteria 3505
2 Ga0070688_100059538 3300005365 Bacteria 2409
3 Ga0068859_100284646 3300005617 Bacteria 1746
4 Ga0068866_10009580 3300005718 Bacteria 4118
5 Ga0068860_100012487 3300005843 Bacteria 8365
6 Ga0081455_10002256 3300005937 Bacteria 22967
7 Ga0081538_10002793 3300005981 Bacteria 16726
8 Ga0075365_10010633 3300006038 Bacteria 5373
9 Ga0075365_10045019 3300006038 Bacteria 2893
10 Ga0075365_10050726 3300006038 Bacteria 2738
11 Ga0075363_100058923 3300006048 Bacteria 2063
12 Ga0075364_10023626 3300006051 Bacteria 3894
13 Ga0075364_10077231 3300006051 Bacteria 2198
14 Ga0075362_10045999 3300006177 Bacteria 1940
15 Ga0075362_10054609 3300006177 Bacteria 1796
16 Ga0075428_100006582 3300006844 Bacteria 12923
17 Ga0075428_100013100 3300006844 Bacteria 9221
18 Ga0075428_100116868 3300006844 Bacteria 2905
19 Ga0075428_100232694 3300006844 Bacteria 1988
20 Ga0075430_100002592 3300006846 Bacteria 15086
21 Ga0075430_100021634 3300006846 Bacteria 5465
22 Ga0075431_100010603 3300006847 Bacteria 9268
23 Ga0075431_100018475 3300006847 Bacteria 7100
24 Ga0075431_100021796 3300006847 Bacteria 6550
25 Ga0075429_100000255 3300006880 Bacteria 36827
26 Ga0097620_100284622 3300006931 Bacteria 1746
27 Ga0111539_10001536 3300009094 Bacteria 30730
28 Ga0105245_10033403 3300009098 Bacteria 4560
29 Ga0114129_10020368 3300009147 Bacteria 9435
30 Ga0105243_10025374 3300009148 Bacteria 4529
31 Ga0105242_10100010 3300009176 Bacteria 2455
32 Ga0105248_10026222 3300009177 Bacteria 6485
33 Ga0157378_10021983 3300013297 Bacteria 5610
34 Ga0157378_10070281 3300013297 Bacteria 3143
35 Ga0157375_10209263 3300013308 Bacteria 2107
36 Ga0157380_10080727 3300014326 Bacteria 2659
37 Ga0157379_10016171 3300014968 Bacteria 6564
38 Ga0213876_10029091 3300021384 Bacteria 2913
39 Ga0207687_10059856 3300025927 Bacteria 2685
40 Ga0207679_10169403 3300025945 Bacteria 1796
41 Ga0207668_10229913 3300025972 Bacteria 1495
42 Ga0207641_10057046 3300026088 Bacteria 3321
43 Ga0207648_10010528 3300026089 Bacteria 8758
44 Ga0207675_100021116 3300026118 Bacteria 6068
45 Ga0207675_100055550 3300026118 Bacteria 3694
46 Ga0207428_10055011 3300027907 Bacteria 3166
47 Ga0307517_10053475 3300028786 Bacteria 4020
48 Ga0316576_10047386 3300031727 Bacteria 3114
49 Ga0316576_10054753 3300031727 Bacteria 2910
50 Ga0316578_10006599 3300031728 Bacteria 5745
51 Ga0307413_10086682 3300031824 Bacteria 2025
52 Ga0307407_10030366 3300031903 Bacteria 2915
53 Ga0307409_100066162 3300031995 Bacteria 2848
54 Ga0373948_0001480 3300034817 Bacteria 3268
55 Ga0373932_0000418 3300035112 Bacteria 12995
56 Ga0316574_0031420 3300035398 Bacteria 3221
57 Ga0373931_0000010 3300035691 Bacteria 334069
58 Ga0373931_0000183 3300035691 Bacteria 27090
59 Ga0316584_0004575 3300036712 Bacteria 9168
60 Ga0316584_0154421 3300036712 Bacteria 1707
61 Ga0400483_055783 3300039062 Bacteria 2297
62 Ga0400483_122074 3300039062 Bacteria 27519
63 Ga0400483_156489 3300039062 Bacteria 5713
64 Ga0400483_274169 3300039062 Bacteria 27465
65 Ga0436365_0911773 3300039437 Bacteria 9397
66 Ga0495629_0123978 3300046459 Bacteria 1800
67 Ga0495651_0057233 3300046462 Bacteria 2993
68 Ga0495608_0019805 3300046511 Bacteria 4627
69 Ga0495630_0097119 3300046517 Bacteria 2228
70 Ga0495587_0014528 3300046536 Bacteria 4937
71 Ga0495634_0030389 3300046642 Bacteria 3731
72 Ga0495657_0009117 3300046675 Bacteria 7538
73 Ga0495672_0021104 3300047320 Bacteria 4253
74 Ga0495680_0014332 3300047322 Bacteria 6871
75 Ga0496100_0058614 3300048903 Bacteria 2528
76 Ga0496105_0007372 3300048908 Bacteria 8513
77 Ga0496108_0094638 3300048911 Bacteria 2543
78 Ga0496109_0059372 3300048912 Bacteria 3494
79 Ga0496109_0261522 3300048912 Bacteria 1630
80 Ga0496110_0014510 3300048913 Bacteria 6546
81 Ga0496111_0003630 3300048914 Bacteria 9570
82 Ga0496114_0007981 3300048917 Bacteria 8374
83 Ga0496114_0024773 3300048917 Bacteria 4899
84 Ga0501031_0019334 3300049568 Bacteria 4436
85 Ga0501031_0084889 3300049568 Bacteria 2064
86 Ga0501034_0014954 3300049571 Bacteria 7982
87 Ga0501034_0104872 3300049571 Bacteria 2820
88 Ga0501037_0004595 3300049573 Bacteria 10034
89 Ga0501038_0011372 3300049574 Bacteria 8123
90 Ga0501039_0020905 3300049575 Bacteria 5018
91 Ga0501039_0069953 3300049575 Bacteria 2726
92 Ga0501040_0026433 3300049576 Bacteria 3904
93 Ga0501040_0048238 3300049576 Bacteria 2911
94 Ga0501040_0049318 3300049576 Bacteria 2878
95 Ga0501040_0114989 3300049576 Bacteria 1884
96 Ga0501040_0144882 3300049576 Bacteria 1674
97 Ga0501041_0021316 3300049577 Bacteria 3883
98 Ga0501042_0045191 3300049578 Bacteria 3139
99 Ga0501046_0032370 3300049580 Bacteria 4234
100 Ga0501048_0060499 3300049582 Bacteria 2684
101 Ga0501048_0141601 3300049582 Bacteria 1700
102 Ga0501068_0004571 3300049584 Bacteria 7525
103 Ga0501068_0006338 3300049584 Bacteria 6518
104 Ga0501068_0104678 3300049584 Bacteria 1756
105 Ga0501069_0000015 3300049585 Bacteria 144828
106 Ga0501070_0000005 3300049586 Bacteria 250033
107 Ga0501070_0000527 3300049586 Bacteria 35102
108 Ga0501070_0001877 3300049586 Bacteria 18571
109 Ga0501070_0090007 3300049586 Bacteria 2540
110 Ga0501071_0015372 3300049587 Bacteria 5254
111 Ga0501071_0019916 3300049587 Bacteria 4659
112 Ga0501071_0025555 3300049587 Bacteria 4138
113 Ga0501071_0040420 3300049587 Bacteria 3337
114 Ga0501071_0060738 3300049587 Bacteria 2737
115 Ga0501072_0005815 3300049588 Bacteria 9395
116 Ga0501072_0019673 3300049588 Bacteria 5222
117 Ga0501072_0029604 3300049588 Bacteria 4278
118 Ga0501073_0000661 3300049589 Bacteria 24171
119 Ga0501073_0002444 3300049589 Bacteria 13872
120 Ga0501074_0007756 3300049590 Bacteria 7771
121 Ga0501075_0048228 3300049591 Bacteria 3201
122 Ga0501075_0083145 3300049591 Bacteria 2425
123 Ga0501076_0038518 3300049592 Bacteria 3753
124 Ga0501076_0065039 3300049592 Bacteria 2907
125 Ga0501079_0036112 3300049741 Bacteria 3806
126 Ga0501079_0045328 3300049741 Bacteria 3394
127 Ga0501080_0003181 3300049742 Bacteria 14474
128 Ga0501080_0005441 3300049742 Bacteria 11359
129 Ga0501081_0007021 3300049743 Bacteria 7321
130 Ga0501081_0159957 3300049743 Bacteria 1622
131 Ga0501035_0080101 3300049822 Bacteria 2884
132 Ga0501044_0000493 3300049823 Bacteria 47877
133 Ga0501045_0003270 3300049824 Bacteria 11075
134 nmdc:mga03683_3889_c1 3300050489 Bacteria 4882
135 nmdc:mga00v17_11280_c1 3300050491 Bacteria 4911
136 nmdc:mga00v17_13985_c1 3300050491 Bacteria 4469
137 nmdc:mga0yw44_108867_c1 3300050492 Bacteria 1773
138 nmdc:mga0yw44_23744_c1 3300050492 Bacteria 3459
139 nmdc:mga0yw44_41008_c1 3300050492 Bacteria 2754
140 nmdc:mga0yw44_4174_c1 3300050492 Bacteria 6570
141 nmdc:mga05p37_11430_c1 3300050507 Bacteria 10569
142 nmdc:mga09592_15592_c1 3300050508 Bacteria 6210
143 nmdc:mga0qj67_48250_c1 3300050509 Bacteria 3364
144 nmdc:mga0qj67_70802_c1 3300050509 Bacteria 2783
145 nmdc:mga06r32_6783_c1 3300050510 Bacteria 10291
146 nmdc:mga08y16_360372_c1 3300050511 Bacteria 1493
147 nmdc:mga0rr50_34851_c1 3300050513 Bacteria 3608
148 Ga0495601_0090702 3300053077 Bacteria 1967
149 Ga0500616_0000820 3300053153 Bacteria 35228
150 Ga0500616_0008520 3300053153 Bacteria 6357
151 Ga0501084_0004786 3300054114 Bacteria 11064
152 Ga0501082_0047867 3300060353 Bacteria 3685
153 Ga0501082_0105721 3300060353 Bacteria 2435
154 Ga0501082_0178479 3300060353 Bacteria 1847
155 Ga0530510_0029443 3300061734 Bacteria 3941

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300060353 Ga0501082_0047867 Ga0501082_0047867_1382_2695 417
2 3300049571 Ga0501034_0014954 Ga0501034_0014954_5361_6737 435
3 3300049586 Ga0501070_0090007 Ga0501070_0090007_445_1821 435
4 3300053153 Ga0500616_0008520 Ga0500616_0008520_815_2164 436
5 3300050492 nmdc:mga0yw44_4174_c1 nmdc:mga0yw44_4174_c1_2893_4224 443
6 3300006038 Ga0075365_10045019 Ga0075365_100450192 446
7 3300006048 Ga0075363_100058923 Ga0075363_1000589232 446
8 3300050492 nmdc:mga0yw44_23744_c1 nmdc:mga0yw44_23744_c1_1152_2570 446
9 3300046459 Ga0495629_0123978 Ga0495629_0123978_12_1358 448
10 3300047320 Ga0495672_0021104 Ga0495672_0021104_2785_4131 448
11 3300049590 Ga0501074_0007756 Ga0501074_0007756_3925_5355 448
12 3300026118 Ga0207675_100055550 Ga0207675_1000555504 449
13 3300028786 Ga0307517_10053475 Ga0307517_100534754 449
14 3300049584 Ga0501068_0004571 Ga0501068_0004571_947_2377 449
15 3300049588 Ga0501072_0019673 Ga0501072_0019673_2339_3769 449
16 3300049589 Ga0501073_0000661 Ga0501073_0000661_20405_21835 449
17 3300049742 Ga0501080_0005441 Ga0501080_0005441_9642_11072 449
18 3300006038 Ga0075365_10010633 Ga0075365_100106334 453
19 3300006051 Ga0075364_10023626 Ga0075364_100236263 453
20 3300006051 Ga0075364_10077231 Ga0075364_100772311 453
21 3300006177 Ga0075362_10045999 Ga0075362_100459992 453
22 3300006177 Ga0075362_10054609 Ga0075362_100546092 453
23 3300049576 Ga0501040_0144882 Ga0501040_0144882_19_1449 453
24 3300050489 nmdc:mga03683_3889_c1 nmdc:mga03683_3889_c1_2271_3689 453
25 3300050491 nmdc:mga00v17_11280_c1 nmdc:mga00v17_11280_c1_1450_2868 453
26 3300050492 nmdc:mga0yw44_108867_c1 nmdc:mga0yw44_108867_c1_114_1532 453
27 3300039062 Ga0400483_122074 Ga0400483_122074_8666_10036 456
28 3300039062 Ga0400483_274169 Ga0400483_274169_17511_18881 456
29 3300006038 Ga0075365_10050726 Ga0075365_100507263 457
30 3300034817 Ga0373948_0001480 Ga0373948_0001480_557_1936 457
31 3300035112 Ga0373932_0000418 Ga0373932_0000418_3159_4538 457
32 3300035691 Ga0373931_0000010 Ga0373931_0000010_168745_170124 457
33 3300035691 Ga0373931_0000183 Ga0373931_0000183_16422_17801 457
34 3300039062 Ga0400483_156489 Ga0400483_156489_2568_3947 457
35 3300046517 Ga0495630_0097119 Ga0495630_0097119_136_1512 457
36 3300049568 Ga0501031_0084889 Ga0501031_0084889_299_1672 457
37 3300049573 Ga0501037_0004595 Ga0501037_0004595_102_1475 457
38 3300049574 Ga0501038_0011372 Ga0501038_0011372_1591_2964 457
39 3300049586 Ga0501070_0001877 Ga0501070_0001877_2197_3570 457
40 3300049822 Ga0501035_0080101 Ga0501035_0080101_1120_2493 457
41 3300049823 Ga0501044_0000493 Ga0501044_0000493_3917_5290 457
42 3300050492 nmdc:mga0yw44_41008_c1 nmdc:mga0yw44_41008_c1_977_2356 457
43 3300005365 Ga0070688_100059538 Ga0070688_1000595382 458
44 3300005843 Ga0068860_100012487 Ga0068860_1000124878 458
45 3300009148 Ga0105243_10025374 Ga0105243_100253743 458
46 3300009177 Ga0105248_10026222 Ga0105248_100262228 458
47 3300013297 Ga0157378_10021983 Ga0157378_100219834 458
48 3300013308 Ga0157375_10209263 Ga0157375_102092632 458
49 3300014968 Ga0157379_10016171 Ga0157379_100161718 458
50 3300039062 Ga0400483_055783 Ga0400483_055783_379_1815 458
51 3300048903 Ga0496100_0058614 Ga0496100_0058614_348_1727 458
52 3300048908 Ga0496105_0007372 Ga0496105_0007372_2666_4045 458
53 3300048917 Ga0496114_0007981 Ga0496114_0007981_44_1423 458
54 3300049576 Ga0501040_0026433 Ga0501040_0026433_502_1881 458
55 3300049582 Ga0501048_0141601 Ga0501048_0141601_111_1490 458
56 3300049585 Ga0501069_0000015 Ga0501069_0000015_26683_28059 458
57 3300049586 Ga0501070_0000005 Ga0501070_0000005_182098_183474 458
58 3300049587 Ga0501071_0025555 Ga0501071_0025555_2064_3452 458
59 3300049587 Ga0501071_0040420 Ga0501071_0040420_990_2366 458
60 3300049588 Ga0501072_0005815 Ga0501072_0005815_296_1675 458
61 3300049591 Ga0501075_0048228 Ga0501075_0048228_1742_3121 458
62 3300049591 Ga0501075_0083145 Ga0501075_0083145_1025_2413 458
63 3300049592 Ga0501076_0065039 Ga0501076_0065039_116_1495 458
64 3300049741 Ga0501079_0045328 Ga0501079_0045328_231_1610 458
65 3300049742 Ga0501080_0003181 Ga0501080_0003181_4869_6245 458
66 3300049743 Ga0501081_0007021 Ga0501081_0007021_1559_2938 458
67 3300049824 Ga0501045_0003270 Ga0501045_0003270_1463_2842 458
68 3300050509 nmdc:mga0qj67_48250_c1 nmdc:mga0qj67_48250_c1_1822_3216 458
69 3300060353 Ga0501082_0105721 Ga0501082_0105721_109_1488 458
70 3300060353 Ga0501082_0178479 Ga0501082_0178479_411_1790 458
71 3300014326 Ga0157380_10080727 Ga0157380_100807271 459
72 3300026118 Ga0207675_100021116 Ga0207675_1000211166 459
73 3300036712 Ga0316584_0154421 Ga0316584_0154421_243_1664 459
74 3300049571 Ga0501034_0104872 Ga0501034_0104872_14_1432 459
75 3300036712 Ga0316584_0004575 Ga0316584_0004575_825_2327 460
76 3300050513 nmdc:mga0rr50_34851_c1 nmdc:mga0rr50_34851_c1_2191_3573 460
77 3300053153 Ga0500616_0000820 Ga0500616_0000820_33676_35094 460
78 3300009098 Ga0105245_10033403 Ga0105245_100334035 461
79 3300009176 Ga0105242_10100010 Ga0105242_101000102 461
80 3300013297 Ga0157378_10070281 Ga0157378_100702814 461
81 3300025927 Ga0207687_10059856 Ga0207687_100598563 461
82 3300025972 Ga0207668_10229913 Ga0207668_102299131 461
83 3300046462 Ga0495651_0057233 Ga0495651_0057233_119_1555 461
84 3300046511 Ga0495608_0019805 Ga0495608_0019805_1031_2467 461
85 3300046536 Ga0495587_0014528 Ga0495587_0014528_3459_4895 461
86 3300046642 Ga0495634_0030389 Ga0495634_0030389_1924_3309 461
87 3300046675 Ga0495657_0009117 Ga0495657_0009117_2355_3896 461
88 3300047322 Ga0495680_0014332 Ga0495680_0014332_2784_4220 461
89 3300053077 Ga0495601_0090702 Ga0495601_0090702_211_1602 461
90 3300031728 Ga0316578_10006599 Ga0316578_100065996 462
91 3300031824 Ga0307413_10086682 Ga0307413_100866822 462
92 3300031903 Ga0307407_10030366 Ga0307407_100303662 462
93 3300031995 Ga0307409_100066162 Ga0307409_1000661622 462
94 3300049587 Ga0501071_0060738 Ga0501071_0060738_882_2315 464
95 3300005617 Ga0068859_100284646 Ga0068859_1002846462 465
96 3300006931 Ga0097620_100284622 Ga0097620_1002846222 465
97 3300026088 Ga0207641_10057046 Ga0207641_100570462 465
98 3300048911 Ga0496108_0094638 Ga0496108_0094638_986_2446 465
99 3300048912 Ga0496109_0059372 Ga0496109_0059372_1435_2895 465
100 3300048913 Ga0496110_0014510 Ga0496110_0014510_1453_2913 465
101 3300048914 Ga0496111_0003630 Ga0496111_0003630_5209_6669 465
102 3300048917 Ga0496114_0024773 Ga0496114_0024773_3325_4785 465
103 3300050491 nmdc:mga00v17_13985_c1 nmdc:mga00v17_13985_c1_2375_3838 470
104 3300005718 Ga0068866_10009580 Ga0068866_100095802 471
105 3300021384 Ga0213876_10029091 Ga0213876_100290913 471
106 3300025945 Ga0207679_10169403 Ga0207679_101694031 471
107 3300026089 Ga0207648_10010528 Ga0207648_100105287 471
108 3300031727 Ga0316576_10047386 Ga0316576_100473864 471
109 3300031727 Ga0316576_10054753 Ga0316576_100547533 471
110 3300035398 Ga0316574_0031420 Ga0316574_0031420_1362_2783 471
111 3300039437 Ga0436365_0911773 Ga0436365_0911773_5535_6953 471
112 3300048912 Ga0496109_0261522 Ga0496109_0261522_176_1600 471
113 3300006844 Ga0075428_100013100 Ga0075428_1000131004 472
114 3300006846 Ga0075430_100021634 Ga0075430_1000216343 472
115 3300006847 Ga0075431_100021796 Ga0075431_1000217962 472
116 3300049575 Ga0501039_0069953 Ga0501039_0069953_38_1468 472
117 3300049576 Ga0501040_0048238 Ga0501040_0048238_935_2365 472
118 3300049576 Ga0501040_0114989 Ga0501040_0114989_349_1785 472
119 3300049578 Ga0501042_0045191 Ga0501042_0045191_1164_2588 472
120 3300049582 Ga0501048_0060499 Ga0501048_0060499_594_2024 472
121 3300049584 Ga0501068_0006338 Ga0501068_0006338_834_2258 472
122 3300049586 Ga0501070_0000527 Ga0501070_0000527_28032_29456 472
123 3300049587 Ga0501071_0019916 Ga0501071_0019916_2493_3917 472
124 3300049588 Ga0501072_0029604 Ga0501072_0029604_380_1801 472
125 3300049589 Ga0501073_0002444 Ga0501073_0002444_8472_9896 472
126 3300054114 Ga0501084_0004786 Ga0501084_0004786_561_1985 472
127 3300003373 JGI25407J50210_10004198 JGI25407J50210_100041983 473
128 3300005937 Ga0081455_10002256 Ga0081455_1000225614 473
129 3300005981 Ga0081538_10002793 Ga0081538_100027934 473
130 3300006844 Ga0075428_100006582 Ga0075428_1000065828 473
131 3300006844 Ga0075428_100116868 Ga0075428_1001168683 473
132 3300006844 Ga0075428_100232694 Ga0075428_1002326942 473
133 3300006846 Ga0075430_100002592 Ga0075430_10000259212 473
134 3300006847 Ga0075431_100010603 Ga0075431_1000106034 473
135 3300006847 Ga0075431_100018475 Ga0075431_1000184753 473
136 3300006880 Ga0075429_100000255 Ga0075429_10000025535 473
137 3300009094 Ga0111539_10001536 Ga0111539_1000153620 473
138 3300009147 Ga0114129_10020368 Ga0114129_100203684 473
139 3300027907 Ga0207428_10055011 Ga0207428_100550112 473
140 3300049568 Ga0501031_0019334 Ga0501031_0019334_583_2004 473
141 3300049575 Ga0501039_0020905 Ga0501039_0020905_2437_3858 473
142 3300049576 Ga0501040_0049318 Ga0501040_0049318_884_2305 473
143 3300049577 Ga0501041_0021316 Ga0501041_0021316_2033_3454 473
144 3300049580 Ga0501046_0032370 Ga0501046_0032370_2655_4076 473
145 3300049584 Ga0501068_0104678 Ga0501068_0104678_178_1599 473
146 3300049587 Ga0501071_0015372 Ga0501071_0015372_1458_2879 473
147 3300049592 Ga0501076_0038518 Ga0501076_0038518_34_1455 473
148 3300049741 Ga0501079_0036112 Ga0501079_0036112_2335_3756 473
149 3300049743 Ga0501081_0159957 Ga0501081_0159957_43_1464 473
150 3300050507 nmdc:mga05p37_11430_c1 nmdc:mga05p37_11430_c1_2767_4188 473
151 3300050508 nmdc:mga09592_15592_c1 nmdc:mga09592_15592_c1_405_1826 473
152 3300050509 nmdc:mga0qj67_70802_c1 nmdc:mga0qj67_70802_c1_1279_2700 473
153 3300050510 nmdc:mga06r32_6783_c1 nmdc:mga06r32_6783_c1_6100_7521 473
154 3300050511 nmdc:mga08y16_360372_c1 nmdc:mga08y16_360372_c1_20_1441 473
155 3300061734 Ga0530510_0029443 Ga0530510_0029443_333_1754 473

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00919

UPF0004

Uncharacterized protein family UPF0004

37

136

0.96

PF01938

TRAM

TRAM domain

425

488

0.93

PF04055

Radical_SAM

Radical SAM superfamily

187

371

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2qgq-assembly4.cif.gz_D crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.921 150 456
2qgq-assembly1.cif.gz_A crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.92 151 456
2qgq-assembly4.cif.gz_D crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.9177 150 456
7mjx-assembly1.cif.gz_A miab in the complex with 5'-deoxyadenosine, methionine and rna 0.9145 4 456
2qgq-assembly1.cif.gz_A crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.9102 151 456
ID Description Score Start End Superfamily
af_P0AEI1_3_129_3.40.50.12160 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Methylthiotransferase, N-terminal domain 0.9677 4 129 3.40.50.12160
af_P9WK05_59_189_3.40.50.12160 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Methylthiotransferase, N-terminal domain 0.9656 6 130 3.40.50.12160
af_Q2FZ02_69_199_3.40.50.12160 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Methylthiotransferase, N-terminal domain 0.9616 6 129 3.40.50.12160
af_Q2FZ02_212_444_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.9554 153 388 3.80.30.20
af_P0AEI1_3_129_3.40.50.12160 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Methylthiotransferase, N-terminal domain 0.953 4 129 3.40.50.12160
ID Description Score Start End GO Terms
AF-A0A3D5UHL2-F1-model_v4 deleted 0.9741 4 118
AF-A0A6N6S7Z2-F1-model_v4 MTTase N-terminal domain-containing protein 0.9734 4 129 GO:0005829
GO:0035597
GO:0046872
GO:0051539
AF-A0A376UDL7-F1-model_v4 tRNA-i(6)A37 thiotransferase enzyme MiaB (EC 2.-.-.-) 0.9705 4 104 GO:0005829
GO:0035597
GO:0046872
GO:0051539
AF-A0A855X3C7-F1-model_v4 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (EC 2.8.4.3) 0.9665 251 456 GO:0005829
GO:0035597
GO:0046872
GO:0051539
AF-A0A2N5ABG4-F1-model_v4 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.9663 4 100 GO:0005829
GO:0035597
GO:0046872
GO:0051539

Feature Viewer

pLDDT pTM Quality
89.66 0.89 High
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Predicted Structure (AlphaFold2)

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