F221788

General Info

Members Datasets Scaffolds Average Seq Length
155 82 154 222

Family's Representative Sequence

Representative Sequence 3300005614|Ga0068856_100011088|Ga0068856_1000110883
Length 245
Sequence MVNKKKKPRPLLAAGRNFNFMKKITVLLAEDHMVVREGFRKMLELEGDFEVVGEAQDGRLAVALAKKLHPAVVLMDIAMPQLNGLEATRQILKAIPAAKVLMLSAHSDDAYVQNATESGAVGFLLKQTSAHDVCRAIREVYAGKTFFSTSIAKHFNRLNPPLSGRAGALNSKTARLTSREVEVLQLIAEGKANKETADELGIGIKTVEKHREHLMQKLDIHDTAGLTRYAISAGIIESSVQLTIV

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
4 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
7 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
10 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
14 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
15 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
16 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
17 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
21 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
30 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
31 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
32 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
33 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
34 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
35 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
36 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
37 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
38 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
39 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
40 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
41 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
42 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
43 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
44 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
45 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
46 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
47 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
48 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
49 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
50 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
51 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
52 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
53 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
54 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
55 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
56 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
57 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
58 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
59 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
60 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
61 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
62 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
63 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
64 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
65 3300036457 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
67 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
68 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
69 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
70 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
71 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
72 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
73 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
74 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
75 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
76 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
77 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
78 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
79 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
80 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
81 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
82 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.35
Metatranscriptomes 0.65
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.65
Nodule 0
Rhizoplane 0.65
Rhizosphere 98.71
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10097237 3300005327 Unclassified 2431
2 Ga0070683_100810896 3300005329 Unclassified 897
3 Ga0070687_100082179 3300005343 Bacteria 1761
4 Ga0070673_100116437 3300005364 Bacteria 2223
5 Ga0070713_100024234 3300005436 Bacteria 4724
6 Ga0070701_10120939 3300005438 Bacteria 1475
7 Ga0070694_100863009 3300005444 Bacteria 745
8 Ga0070678_100375673 3300005456 Bacteria 1228
9 Ga0070679_100053348 3300005530 Bacteria 4025
10 Ga0070697_100856677 3300005536 Bacteria 805
11 Ga0068855_100065904 3300005563 Bacteria 4222
12 Ga0068856_100000058 3300005614 Bacteria 101767
13 Ga0068856_100011088 3300005614 Bacteria 8754
14 Ga0068863_100633959 3300005841 Bacteria 1059
15 Ga0070717_10000003 3300006028 Bacteria 370103
16 Ga0075428_100124755 3300006844 Bacteria 2803
17 Ga0075436_100419002 3300006914 Bacteria 972
18 Ga0075435_100535832 3300007076 Bacteria 1013
19 Ga0105240_10069917 3300009093 Bacteria 4344
20 Ga0111539_10383786 3300009094 Bacteria 1636
21 Ga0105238_10050107 3300009551 Bacteria 4204
22 Ga0105238_10206769 3300009551 Bacteria 1939
23 Ga0105238_10466993 3300009551 Bacteria 1260
24 Ga0207705_10092510 3300025909 Unclassified 2216
25 Ga0207695_10679666 3300025913 Bacteria 910
26 Ga0207662_10055840 3300025918 Bacteria 2357
27 Ga0207652_10036745 3300025921 Bacteria 4142
28 Ga0207694_10078041 3300025924 Bacteria 2595
29 Ga0207694_10286132 3300025924 Bacteria 1355
30 Ga0207694_10329918 3300025924 Bacteria 1260
31 Ga0207700_10006721 3300025928 Bacteria 6981
32 Ga0207667_10205535 3300025949 Bacteria 2019
33 Ga0207702_10001490 3300026078 Bacteria 23156
34 Ga0207702_10005289 3300026078 Bacteria 11323
35 Ga0265337_1000361 3300028556 Bacteria 24382
36 Ga0265337_1000585 3300028556 Bacteria 19124
37 Ga0265337_1004031 3300028556 Bacteria 6202
38 Ga0265337_1015157 3300028556 Bacteria 2532
39 Ga0265337_1018984 3300028556 Unclassified 2175
40 Ga0265337_1031960 3300028556 Bacteria 1560
41 Ga0265337_1131132 3300028556 Unclassified 679
42 Ga0265326_10006594 3300028558 Bacteria 3595
43 Ga0265319_1000007 3300028563 Bacteria 217194
44 Ga0265319_1009396 3300028563 Bacteria 4170
45 Ga0265319_1021107 3300028563 Bacteria 2397
46 Ga0265334_10000483 3300028573 Bacteria 20604
47 Ga0265334_10010808 3300028573 Bacteria 3854
48 Ga0265334_10029867 3300028573 Bacteria 2184
49 Ga0265318_10000013 3300028577 Bacteria 208938
50 Ga0265318_10072364 3300028577 Bacteria 1277
51 Ga0265318_10101205 3300028577 Bacteria 1060
52 Ga0265323_10001138 3300028653 Bacteria 13687
53 Ga0265322_10000340 3300028654 Bacteria 19723
54 Ga0265322_10031036 3300028654 Unclassified 1525
55 Ga0265336_10000769 3300028666 Bacteria 16973
56 Ga0265336_10005017 3300028666 Bacteria 4931
57 Ga0265336_10021669 3300028666 Bacteria 2053
58 Ga0265336_10028928 3300028666 Bacteria 1729
59 Ga0265338_10000442 3300028800 Bacteria 74078
60 Ga0265338_10001485 3300028800 Bacteria 37933
61 Ga0265338_10003392 3300028800 Bacteria 22479
62 Ga0265338_10004967 3300028800 Bacteria 17611
63 Ga0265338_10006587 3300028800 Bacteria 14729
64 Ga0265338_10006625 3300028800 Bacteria 14668
65 Ga0265338_10011897 3300028800 Bacteria 9993
66 Ga0265338_10024150 3300028800 Bacteria 6221
67 Ga0265338_10052182 3300028800 Bacteria 3674
68 Ga0265338_10058109 3300028800 Bacteria 3417
69 Ga0265338_10067844 3300028800 Bacteria 3077
70 Ga0265338_10101300 3300028800 Bacteria 2345
71 Ga0265338_10140586 3300028800 Bacteria 1891
72 Ga0265338_10142196 3300028800 Bacteria 1878
73 Ga0265338_10354420 3300028800 Bacteria 1054
74 Ga0265324_10001039 3300029957 Bacteria 17039
75 Ga0265324_10002285 3300029957 Bacteria 9971
76 Ga0265324_10003648 3300029957 Bacteria 7224
77 Ga0265324_10065994 3300029957 Bacteria 1235
78 Ga0265332_10143247 3300031238 Bacteria 1001
79 Ga0265328_10066536 3300031239 Bacteria 1324
80 Ga0265320_10000579 3300031240 Bacteria 28156
81 Ga0265320_10000919 3300031240 Bacteria 22030
82 Ga0265320_10001451 3300031240 Bacteria 17287
83 Ga0265320_10006481 3300031240 Bacteria 7381
84 Ga0265320_10019531 3300031240 Bacteria 3702
85 Ga0265320_10057754 3300031240 Bacteria 1860
86 Ga0265320_10115458 3300031240 Bacteria 1227
87 Ga0265320_10238546 3300031240 Bacteria 808
88 Ga0265329_10013889 3300031242 Bacteria 2857
89 Ga0265340_10001431 3300031247 Bacteria 13680
90 Ga0265340_10074953 3300031247 Bacteria 1599
91 Ga0265340_10137832 3300031247 Unclassified 1117
92 Ga0265339_10023174 3300031249 Bacteria 3591
93 Ga0265331_10006723 3300031250 Bacteria 6741
94 Ga0265331_10032245 3300031250 Bacteria 2598
95 Ga0265327_10001061 3300031251 Bacteria 38364
96 Ga0265316_10001644 3300031344 Bacteria 23838
97 Ga0265316_10022083 3300031344 Bacteria 5376
98 Ga0265316_10028037 3300031344 Bacteria 4650
99 Ga0265316_10038041 3300031344 Bacteria 3880
100 Ga0265316_10052256 3300031344 Bacteria 3206
101 Ga0265316_10164792 3300031344 Bacteria 1656
102 Ga0265316_10336505 3300031344 Unclassified 1094
103 Ga0265313_10000584 3300031595 Bacteria 38009
104 Ga0265313_10002635 3300031595 Bacteria 15263
105 Ga0265313_10003566 3300031595 Bacteria 12515
106 Ga0265313_10168396 3300031595 Bacteria 927
107 Ga0265314_10000390 3300031711 Bacteria 59669
108 Ga0265314_10011817 3300031711 Bacteria 7176
109 Ga0265314_10022616 3300031711 Bacteria 4814
110 Ga0265314_10026783 3300031711 Bacteria 4326
111 Ga0265314_10034054 3300031711 Bacteria 3727
112 Ga0265314_10171754 3300031711 Bacteria 1308
113 Ga0265342_10006311 3300031712 Bacteria 8840
114 Ga0373930_0001163 3300034816 Bacteria 3848
115 Ga0373950_0003411 3300034818 Bacteria 2264
116 Ga0373944_0000044 3300035089 Bacteria 19973
117 Ga0373944_0034976 3300035089 Bacteria 1529
118 Ga0373949_0001944 3300035090 Bacteria 5566
119 Ga0373951_0006743 3300035091 Bacteria 2622
120 Ga0373932_0000002 3300035112 Bacteria 711821
121 Ga0373945_0012371 3300035116 Bacteria 2834
122 Ga0373954_0010349 3300035118 Bacteria 4116
123 Ga0373962_0000187 3300035242 Bacteria 13009
124 Ga0373931_0000015 3300035691 Bacteria 236539
125 Ga0373935_0255696 3300035692 Bacteria 1227
126 Ga0373933_0139861 3300035724 Bacteria 1528
127 Ga0373933_0321958 3300035724 Bacteria 1003
128 Ga0373933_0534730 3300035724 Bacteria 769
129 Ga0373947_0088224 3300035725 Bacteria 1930
130 Ga0373937_0206754 3300036401 Bacteria 1846
131 Ga0373937_0271060 3300036401 Unclassified 1602
132 Ga0373937_0456397 3300036401 Bacteria 1214
133 Ga0373937_0565855 3300036401 Bacteria 1080
134 Ga0265778_018638 3300036457 Bacteria 844
135 Ga0373925_0000059 3300037068 Bacteria 120259
136 Ga0373925_0014000 3300037068 Bacteria 5806
137 Ga0451577_0022119 3300042876 Bacteria 5808
138 Ga0451577_0454849 3300042876 Bacteria 1163
139 Ga0453684_0002068 3300044712 Bacteria 51026
140 Ga0451576_0088211 3300045051 Bacteria 3227
141 Ga0451576_0248649 3300045051 Bacteria 1858
142 Ga0495592_0082862 3300046454 Bacteria 2317
143 Ga0495628_0088037 3300046516 Bacteria 2407
144 Ga0495630_0701523 3300046517 Bacteria 774
145 Ga0495586_0358715 3300046535 Bacteria 838
146 Ga0495667_0605292 3300046559 Bacteria 682
147 Ga0495674_0515388 3300047319 Bacteria 955
148 Ga0495684_0244114 3300047471 Bacteria 1309
149 Ga0496107_0018685 3300048910 Bacteria 4884
150 Ga0501070_0212931 3300049586 Unclassified 1586
151 nmdc:mga08y16_264454_c1 3300050511 Unclassified 1776
152 nmdc:mga0rr50_477005_c1 3300050513 Bacteria 1059
153 Ga0500628_137443 3300053129 Bacteria 675
154 Ga0501082_0914740 3300060353 Unclassified 767

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300028556 Ga0265337_1131132 Ga0265337_11311321 162
2 3300029957 Ga0265324_10001039 Ga0265324_100010392 162
3 3300031344 Ga0265316_10336505 Ga0265316_103365052 162
4 3300035724 Ga0373933_0321958 Ga0373933_0321958_416_973 183
5 3300028800 Ga0265338_10354420 Ga0265338_103544202 200
6 3300031247 Ga0265340_10137832 Ga0265340_101378322 200
7 3300053129 Ga0500628_137443 Ga0500628_137443_27_632 200
8 3300028556 Ga0265337_1004031 Ga0265337_10040318 202
9 3300028666 Ga0265336_10005017 Ga0265336_100050171 202
10 3300028800 Ga0265338_10003392 Ga0265338_100033921 202
11 3300031240 Ga0265320_10115458 Ga0265320_101154581 202
12 3300046559 Ga0495667_0605292 Ga0495667_0605292_51_665 203
13 3300048910 Ga0496107_0018685 Ga0496107_0018685_1226_1852 204
14 3300005536 Ga0070697_100856677 Ga0070697_1008566771 208
15 3300028800 Ga0265338_10101300 Ga0265338_101013002 208
16 3300029957 Ga0265324_10065994 Ga0265324_100659942 208
17 3300031249 Ga0265339_10023174 Ga0265339_100231747 208
18 3300031711 Ga0265314_10026783 Ga0265314_100267836 211
19 3300060353 Ga0501082_0914740 Ga0501082_0914740_76_720 211
20 3300028556 Ga0265337_1015157 Ga0265337_10151572 212
21 3300028556 Ga0265337_1031960 Ga0265337_10319602 212
22 3300028800 Ga0265338_10140586 Ga0265338_101405863 212
23 3300031251 Ga0265327_10001061 Ga0265327_1000106123 213
24 3300036401 Ga0373937_0565855 Ga0373937_0565855_122_799 214
25 3300028577 Ga0265318_10101205 Ga0265318_101012051 215
26 3300028653 Ga0265323_10001138 Ga0265323_100011389 215
27 3300028654 Ga0265322_10000340 Ga0265322_1000034011 215
28 3300031344 Ga0265316_10052256 Ga0265316_100522565 215
29 3300031711 Ga0265314_10034054 Ga0265314_100340542 215
30 3300031712 Ga0265342_10006311 Ga0265342_100063112 215
31 3300049586 Ga0501070_0212931 Ga0501070_0212931_132_830 217
32 3300031240 Ga0265320_10057754 Ga0265320_100577542 218
33 3300006844 Ga0075428_100124755 Ga0075428_1001247553 221
34 3300009094 Ga0111539_10383786 Ga0111539_103837862 221
35 3300050511 nmdc:mga08y16_264454_c1 nmdc:mga08y16_264454_c1_373_1101 221
36 3300005329 Ga0070683_100810896 Ga0070683_1008108961 222
37 3300005563 Ga0068855_100065904 Ga0068855_1000659042 222
38 3300005614 Ga0068856_100000058 Ga0068856_10000005847 222
39 3300006914 Ga0075436_100419002 Ga0075436_1004190022 222
40 3300025949 Ga0207667_10205535 Ga0207667_102055352 222
41 3300026078 Ga0207702_10001490 Ga0207702_100014908 222
42 3300028800 Ga0265338_10024150 Ga0265338_100241505 222
43 3300028800 Ga0265338_10142196 Ga0265338_101421962 222
44 3300034816 Ga0373930_0001163 Ga0373930_0001163_918_1589 222
45 3300034818 Ga0373950_0003411 Ga0373950_0003411_1302_1973 222
46 3300035089 Ga0373944_0000044 Ga0373944_0000044_4641_5312 222
47 3300035090 Ga0373949_0001944 Ga0373949_0001944_3755_4426 222
48 3300035091 Ga0373951_0006743 Ga0373951_0006743_1749_2420 222
49 3300035112 Ga0373932_0000002 Ga0373932_0000002_492806_493477 222
50 3300035116 Ga0373945_0012371 Ga0373945_0012371_502_1173 222
51 3300035242 Ga0373962_0000187 Ga0373962_0000187_11036_11707 222
52 3300035691 Ga0373931_0000015 Ga0373931_0000015_225217_225888 222
53 3300035692 Ga0373935_0255696 Ga0373935_0255696_238_909 222
54 3300035725 Ga0373947_0088224 Ga0373947_0088224_830_1501 222
55 3300037068 Ga0373925_0000059 Ga0373925_0000059_18265_18936 222
56 3300028800 Ga0265338_10000442 Ga0265338_1000044229 223
57 3300028800 Ga0265338_10001485 Ga0265338_1000148510 223
58 3300029957 Ga0265324_10002285 Ga0265324_100022853 223
59 3300031250 Ga0265331_10032245 Ga0265331_100322454 223
60 3300046535 Ga0495586_0358715 Ga0495586_0358715_87_761 223
61 3300005327 Ga0070658_10097237 Ga0070658_100972371 224
62 3300005343 Ga0070687_100082179 Ga0070687_1000821792 224
63 3300005364 Ga0070673_100116437 Ga0070673_1001164371 224
64 3300005436 Ga0070713_100024234 Ga0070713_1000242342 224
65 3300005438 Ga0070701_10120939 Ga0070701_101209392 224
66 3300005444 Ga0070694_100863009 Ga0070694_1008630091 224
67 3300005456 Ga0070678_100375673 Ga0070678_1003756732 224
68 3300005530 Ga0070679_100053348 Ga0070679_1000533482 224
69 3300005614 Ga0068856_100011088 Ga0068856_1000110883 224
70 3300005841 Ga0068863_100633959 Ga0068863_1006339591 224
71 3300006028 Ga0070717_10000003 Ga0070717_10000003122 224
72 3300007076 Ga0075435_100535832 Ga0075435_1005358322 224
73 3300009093 Ga0105240_10069917 Ga0105240_100699173 224
74 3300009551 Ga0105238_10050107 Ga0105238_100501072 224
75 3300009551 Ga0105238_10206769 Ga0105238_102067693 224
76 3300009551 Ga0105238_10466993 Ga0105238_104669932 224
77 3300025909 Ga0207705_10092510 Ga0207705_100925101 224
78 3300025913 Ga0207695_10679666 Ga0207695_106796661 224
79 3300025918 Ga0207662_10055840 Ga0207662_100558401 224
80 3300025921 Ga0207652_10036745 Ga0207652_100367453 224
81 3300025924 Ga0207694_10078041 Ga0207694_100780411 224
82 3300025924 Ga0207694_10286132 Ga0207694_102861322 224
83 3300025924 Ga0207694_10329918 Ga0207694_103299182 224
84 3300025928 Ga0207700_10006721 Ga0207700_100067216 224
85 3300026078 Ga0207702_10005289 Ga0207702_100052894 224
86 3300028556 Ga0265337_1000361 Ga0265337_100036126 224
87 3300028556 Ga0265337_1000585 Ga0265337_10005858 224
88 3300028556 Ga0265337_1018984 Ga0265337_10189843 224
89 3300028558 Ga0265326_10006594 Ga0265326_100065942 224
90 3300028563 Ga0265319_1000007 Ga0265319_1000007163 224
91 3300028563 Ga0265319_1009396 Ga0265319_10093961 224
92 3300028563 Ga0265319_1021107 Ga0265319_10211073 224
93 3300028573 Ga0265334_10000483 Ga0265334_1000048320 224
94 3300028573 Ga0265334_10010808 Ga0265334_100108083 224
95 3300028573 Ga0265334_10029867 Ga0265334_100298672 224
96 3300028577 Ga0265318_10000013 Ga0265318_10000013124 224
97 3300028577 Ga0265318_10072364 Ga0265318_100723642 224
98 3300028654 Ga0265322_10031036 Ga0265322_100310364 224
99 3300028666 Ga0265336_10000769 Ga0265336_100007695 224
100 3300028666 Ga0265336_10021669 Ga0265336_100216692 224
101 3300028666 Ga0265336_10028928 Ga0265336_100289282 224
102 3300028800 Ga0265338_10003392 Ga0265338_100033926 224
103 3300028800 Ga0265338_10004967 Ga0265338_100049672 224
104 3300028800 Ga0265338_10006587 Ga0265338_1000658715 224
105 3300028800 Ga0265338_10006625 Ga0265338_100066254 224
106 3300028800 Ga0265338_10011897 Ga0265338_1001189714 224
107 3300028800 Ga0265338_10052182 Ga0265338_100521823 224
108 3300028800 Ga0265338_10058109 Ga0265338_100581094 224
109 3300028800 Ga0265338_10067844 Ga0265338_100678444 224
110 3300029957 Ga0265324_10003648 Ga0265324_100036487 224
111 3300031238 Ga0265332_10143247 Ga0265332_101432471 224
112 3300031239 Ga0265328_10066536 Ga0265328_100665361 224
113 3300031240 Ga0265320_10000579 Ga0265320_1000057920 224
114 3300031240 Ga0265320_10000919 Ga0265320_1000091920 224
115 3300031240 Ga0265320_10001451 Ga0265320_1000145112 224
116 3300031240 Ga0265320_10006481 Ga0265320_100064814 224
117 3300031240 Ga0265320_10019531 Ga0265320_100195312 224
118 3300031240 Ga0265320_10238546 Ga0265320_102385461 224
119 3300031242 Ga0265329_10013889 Ga0265329_100138892 224
120 3300031247 Ga0265340_10001431 Ga0265340_100014319 224
121 3300031247 Ga0265340_10074953 Ga0265340_100749532 224
122 3300031250 Ga0265331_10006723 Ga0265331_100067234 224
123 3300031344 Ga0265316_10001644 Ga0265316_1000164431 224
124 3300031344 Ga0265316_10022083 Ga0265316_100220835 224
125 3300031344 Ga0265316_10028037 Ga0265316_100280375 224
126 3300031344 Ga0265316_10038041 Ga0265316_100380413 224
127 3300031344 Ga0265316_10164792 Ga0265316_101647922 224
128 3300031595 Ga0265313_10000584 Ga0265313_1000058419 224
129 3300031595 Ga0265313_10002635 Ga0265313_1000263513 224
130 3300031595 Ga0265313_10003566 Ga0265313_100035669 224
131 3300031595 Ga0265313_10168396 Ga0265313_101683961 224
132 3300031711 Ga0265314_10000390 Ga0265314_1000039031 224
133 3300031711 Ga0265314_10011817 Ga0265314_1001181710 224
134 3300031711 Ga0265314_10022616 Ga0265314_100226164 224
135 3300031711 Ga0265314_10171754 Ga0265314_101717542 224
136 3300035089 Ga0373944_0034976 Ga0373944_0034976_710_1387 224
137 3300035118 Ga0373954_0010349 Ga0373954_0010349_2705_3382 224
138 3300035724 Ga0373933_0139861 Ga0373933_0139861_216_893 224
139 3300035724 Ga0373933_0534730 Ga0373933_0534730_54_731 224
140 3300036401 Ga0373937_0206754 Ga0373937_0206754_1048_1734 224
141 3300036401 Ga0373937_0271060 Ga0373937_0271060_307_984 224
142 3300036401 Ga0373937_0456397 Ga0373937_0456397_436_1116 224
143 3300036457 Ga0265778_018638 Ga0265778_018638_97_774 224
144 3300037068 Ga0373925_0014000 Ga0373925_0014000_4921_5598 224
145 3300042876 Ga0451577_0022119 Ga0451577_0022119_4696_5373 224
146 3300042876 Ga0451577_0454849 Ga0451577_0454849_325_1002 224
147 3300044712 Ga0453684_0002068 Ga0453684_0002068_47174_47851 224
148 3300045051 Ga0451576_0088211 Ga0451576_0088211_2490_3167 224
149 3300045051 Ga0451576_0248649 Ga0451576_0248649_529_1206 224
150 3300046454 Ga0495592_0082862 Ga0495592_0082862_1497_2174 224
151 3300046516 Ga0495628_0088037 Ga0495628_0088037_1422_2099 224
152 3300046517 Ga0495630_0701523 Ga0495630_0701523_21_707 224
153 3300047319 Ga0495674_0515388 Ga0495674_0515388_41_718 224
154 3300047471 Ga0495684_0244114 Ga0495684_0244114_470_1156 224
155 3300050513 nmdc:mga0rr50_477005_c1 nmdc:mga0rr50_477005_c1_333_1010 224

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

26

138

0.97

PF00196

GerE

Bacterial regulatory proteins, luxR family

174

230

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
1zlj-assembly2.cif.gz_C crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain 0.9703 155 209
3eul-assembly2.cif.gz_B structure of the signal receiver domain of the putative response regulator narl from mycobacterium tuberculosis 0.9678 1 124
7ve6-assembly1.cif.gz_B n-terminal domain of vrar 0.9657 3 137
7ssi-assembly1.cif.gz_C crystal structure of the desk:desr-q10a complex in the phosphotransfer state 0.9633 2 131
5wq0-assembly4.cif.gz_D receiver domain of spo0a from paenisporosarcina sp. tg-14 0.962 1 121
ID Description Score Start End Superfamily
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9676 155 207 1.10.10.10
3eulC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9647 3 121 3.40.50.2300
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9623 155 207 1.10.10.10
6ekhY00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9588 2 120 3.40.50.2300
1qmpB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9538 3 122 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A3D2XFI3-F1-model_v4 DNA-binding response regulator 0.9856 1 138 GO:0000160
GO:0003677
AF-A0A4Q3SH94-F1-model_v4 Response regulator transcription factor 0.9788 3 138 GO:0000160
GO:0003677
AF-A0A535H4V3-F1-model_v4 Response regulator transcription factor 0.973 2 138 GO:0000160
GO:0003677
AF-A0A661KWW2-F1-model_v4 Response regulatory domain-containing protein 0.9644 2 141 GO:0000160
GO:0003677
AF-A0A4Q3SH94-F1-model_v4 Response regulator transcription factor 0.9128 3 138 GO:0000160
GO:0003677

Feature Viewer

pLDDT pTM Quality
81.93 0.59 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map