F220969

General Info

Members Datasets Scaffolds Average Seq Length
154 135 308 393

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8047893842|8047899995
Length 456
Sequence DLDAASRPFSSPALRGSSAAPAAPAPRPPRLHLLALNPTDSVTEGFLPAAARLGLAVTLLTDQPEAHERAYGRREGQEGRGEREEREEREEGGAAPHPFPALDIVPCDVRDYAEVISRIAADGPRPRAVFTNSDHLQAQAALAAQYFGLPGKDWRAALRTKNKAELRRALAAAGPDVADPVWSAELATGQDPATLAGLDAPYPCVLKPREGVASEDVVLVADADELVRRCAEIRERRPGAALVVEEFLDGELRTLETLGDGRTLHVLGAFRTELSPPPHFIEERLHLLPAPPPQPHTDQVLAQLRALGVGFGVCHTEYVVQGDRARLIEVNYRAIGDQCDLVLAELLGIPLFEYILRTHMGEPLPDDLGARTDGRVRMEYVMADRAGRLASAPPAGVTERDGVRLDYRPLRGIGEEHPLHRTNRDFLGVLRATGTDQARIDAAVARFLAAHRWEIV

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
11 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
12 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
13 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
14 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
17 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
18 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
19 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
20 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
21 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
22 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
23 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
30 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
31 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
32 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
33 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
34 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
35 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
36 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
37 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
38 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
39 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
40 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
41 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
42 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
43 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
44 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
45 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
46 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
47 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
48 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
49 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
50 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
51 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
52 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
53 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
54 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
55 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
56 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
57 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
58 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
61 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
73 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
74 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
75 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
76 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
77 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
78 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
79 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
80 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
81 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
82 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
84 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
85 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
86 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
87 3300053113 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 endosphere Metagenome Endosphere
88 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
89 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
90 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
91 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
92 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
93 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
94 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
95 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
96 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
97 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
98 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
99 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
100 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
101 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
102 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
103 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
104 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
105 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
106 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
107 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
108 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
109 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
110 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
111 2867369537 Streptomyces sp. Z26 Isolate Unclassified
112 2867475112 Streptomyces sp. TM32 Isolate Unclassified
113 2873314349 Sphaerisporangium siamense DSM 45784 Isolate Rhizosphere
114 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
115 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
116 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
117 2891562705 Microbispora tritici MT50 Isolate Unclassified
118 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
119 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified
120 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
121 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
122 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
123 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
124 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
125 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
126 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
127 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
128 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
129 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
130 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
131 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
132 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
133 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
134 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
135 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 74.03
Metatranscriptomes 0
Isolates 25.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.09
Nodule 1.95
Rhizoplane 0.65
Rhizosphere 61.69
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10005029 3300003316 Bacteria 23039
2 rootH2_10073078 3300003320 Bacteria 4915
3 rootL2_10000433 3300003322 Bacteria 7260
4 rootH1_10002577 3300003323 Bacteria 8131
5 JGI25160J50197_1013432 3300003354 Bacteria 2791
6 JGI25160J50197_1023049 3300003354 Bacteria 1810
7 Ga0070668_100089516 3300005347 Bacteria 2424
8 Ga0070674_100238905 3300005356 Bacteria 1421
9 Ga0070667_100164871 3300005367 Bacteria 1954
10 Ga0070714_100002605 3300005435 Bacteria 13294
11 Ga0068854_100074250 3300005578 Bacteria 2494
12 Ga0070702_100000792 3300005615 Bacteria 12038
13 Ga0068866_10106064 3300005718 Bacteria 1559
14 Ga0068860_100168138 3300005843 Bacteria 2117
15 Ga0070717_10065473 3300006028 Bacteria 3021
16 Ga0075431_100072902 3300006847 Bacteria 3543
17 Ga0105238_10197598 3300009551 Bacteria 1987
18 Ga0157378_10015508 3300013297 Bacteria 6675
19 Ga0157372_10114034 3300013307 Bacteria 3098
20 Ga0182008_10001939 3300014497 Bacteria 13357
21 Ga0163161_10109119 3300017792 Bacteria 2067
22 Ga0213875_10038840 3300021388 Bacteria 2243
23 Ga0207426_1003125 3300025302 Bacteria 9440
24 Ga0207426_1015261 3300025302 Bacteria 2789
25 Ga0207647_10150312 3300025904 Bacteria 1361
26 Ga0207664_10013495 3300025929 Bacteria 5866
27 Ga0207669_10097037 3300025937 Bacteria 1937
28 Ga0207668_10074497 3300025972 Bacteria 2437
29 Ga0207658_10093328 3300025986 Bacteria 2340
30 Ga0207675_100117053 3300026118 Bacteria 2519
31 Ga0307517_10004044 3300028786 Bacteria 22675
32 Ga0307515_10250537 3300028794 Bacteria 1524
33 Ga0307512_10012805 3300030522 Bacteria 7892
34 Ga0307513_10000135 3300031456 Bacteria 103254
35 Ga0307513_10000350 3300031456 Bacteria 67174
36 Ga0307513_10026244 3300031456 Bacteria 6723
37 Ga0307513_10104721 3300031456 Bacteria 2841
38 Ga0307508_10011114 3300031616 Bacteria 8231
39 Ga0307508_10065417 3300031616 Bacteria 3203
40 Ga0307514_10067035 3300031649 Bacteria 2711
41 Ga0316214_1000591 3300033545 Bacteria 3785
42 Ga0395905_0124469 3300037471 Bacteria 2424
43 Ga0436364_1395922 3300037853 Bacteria 17720
44 Ga0439436_0026832 3300041404 Bacteria 1686
45 Ga0439436_0040002 3300041404 Bacteria 1345
46 Ga0439439_0009850 3300041406 Bacteria 2279
47 Ga0439439_0022459 3300041406 Bacteria 1576
48 Ga0451837_0100167 3300041494 Bacteria 4051
49 Ga0451853_0440608 3300041512 Bacteria 1358
50 Ga0451853_1015589 3300041512 Bacteria 5155
51 Ga0439433_0027655 3300041999 Bacteria 1287
52 Ga0439448_0009567 3300042005 Bacteria 2859
53 Ga0439455_0002165 3300042012 Bacteria 3516
54 Ga0439457_001391 3300042014 Bacteria 7285
55 Ga0450894_006863 3300042131 Bacteria 1468
56 Ga0450903_000486 3300042138 Bacteria 8341
57 Ga0439458_0001302 3300042157 Bacteria 6299
58 Ga0495585_0026692 3300046492 Bacteria 3298
59 Ga0495643_0003006 3300046522 Bacteria 12686
60 Ga0495625_0048457 3300046660 Bacteria 3059
61 Ga0495623_0011791 3300046679 Bacteria 5662
62 Ga0495670_0112067 3300046691 Bacteria 1412
63 Ga0495604_0011699 3300047317 Bacteria 6978
64 Ga0495604_0026695 3300047317 Bacteria 4596
65 Ga0495675_0003868 3300047444 Bacteria 9072
66 Ga0495685_003402 3300047447 Bacteria 5080
67 Ga0495686_0121619 3300047472 Bacteria 1555
68 Ga0501031_0000688 3300049568 Bacteria 20160
69 Ga0501031_0079012 3300049568 Bacteria 2144
70 Ga0501032_0000508 3300049569 Bacteria 31555
71 Ga0501032_0233270 3300049569 Bacteria 1196
72 Ga0501033_0046111 3300049570 Bacteria 3241
73 Ga0501034_0001988 3300049571 Bacteria 25876
74 Ga0501034_0052934 3300049571 Bacteria 4089
75 Ga0501036_0065456 3300049572 Bacteria 3076
76 Ga0501037_0000799 3300049573 Bacteria 23659
77 Ga0501038_0001181 3300049574 Bacteria 23704
78 Ga0501038_0006283 3300049574 Bacteria 10983
79 Ga0501039_0081084 3300049575 Bacteria 2526
80 Ga0501040_0013652 3300049576 Bacteria 5341
81 Ga0501041_0004346 3300049577 Bacteria 8196
82 Ga0501043_0002888 3300049579 Bacteria 14350
83 Ga0501043_0086453 3300049579 Bacteria 2464
84 Ga0501046_0001064 3300049580 Bacteria 26894
85 Ga0501047_0000823 3300049581 Bacteria 32143
86 Ga0501048_0001884 3300049582 Bacteria 15918
87 Ga0501067_0003147 3300049583 Bacteria 9113
88 Ga0501069_0042250 3300049585 Bacteria 2521
89 Ga0501070_0001989 3300049586 Bacteria 17961
90 Ga0501072_0007334 3300049588 Bacteria 8365
91 Ga0501073_0105598 3300049589 Bacteria 1954
92 Ga0501074_0006074 3300049590 Bacteria 8720
93 Ga0501076_0003435 3300049592 Bacteria 11115
94 Ga0501077_0008313 3300049593 Bacteria 6418
95 Ga0501079_0010183 3300049741 Bacteria 7137
96 Ga0501083_0001444 3300049744 Bacteria 16225
97 Ga0501035_0000812 3300049822 Bacteria 33315
98 Ga0501035_0005206 3300049822 Bacteria 12308
99 Ga0501044_0001218 3300049823 Bacteria 30546
100 Ga0501044_0065865 3300049823 Bacteria 3694
101 Ga0501044_0246560 3300049823 Bacteria 1729
102 nmdc:mga03n38_76616_c1 3300050490 Bacteria 1561
103 Ga0500654_048639 3300053099 Bacteria 2312
104 Ga0500569_018262 3300053109 Bacteria 1808
105 Ga0500580_013261 3300053113 Bacteria 3318
106 Ga0500573_0002378 3300053140 Bacteria 9380
107 Ga0500616_0000146 3300053153 Bacteria 119628
108 Ga0500616_0003308 3300053153 Bacteria 12432
109 Ga0500633_0007494 3300053160 Bacteria 2752
110 Ga0500634_0047911 3300053161 Bacteria 2306
111 Ga0500587_007072 3300053739 Bacteria 1470
112 Ga0501084_0021812 3300054114 Bacteria 5341
113 Ga0501082_0003871 3300060353 Bacteria 13071
114 Ga0530510_0021372 3300061734 Bacteria 4605
115 8047899995 8047893842 Bacteria 11723082
116 2514042032 2513237165 Bacteria 6771773
117 2515721007 2515154129 Bacteria 5584369
118 2515759333 2515154137 Bacteria 5711575
119 2676493119 2675903060 Bacteria 10051191
120 2785346849 2784746763 Bacteria 9783172
121 2786674291 2786546132 Bacteria 10419719
122 2793983927 2791355406 Bacteria 11364898
123 2795785915 2795385470 Bacteria 8317180
124 2811843062 2808606982 Bacteria 7791042
125 2856744648 2856741275 Bacteria 8096094
126 2858696999 2858688981 Bacteria 8184122
127 2862383232 2862382967 Bacteria 10317375
128 2867315034 2867312974 Bacteria 7058875
129 2867319969 2867319477 Bacteria 7069771
130 2867369700 2867369537 Bacteria 6501581
131 2867478128 2867475112 Bacteria 6909112
132 2873317035 2873314349 Bacteria 8512634
133 2884702824 2884693830 Bacteria 11273186
134 2891399412 2891395885 Bacteria 9251614
135 2891558879 2891554331 Bacteria 8812224
136 2891564186 2891562705 Bacteria 8039471
137 2895449240 2895442618 Bacteria 11027144
138 2901305857 2901300506 Bacteria 8463898
139 2954009230 2954002825 Bacteria 9173742
140 2954681120 2954673503 Bacteria 9685905
141 2954683037 2954682443 Bacteria 9862841
142 2990061035 2990059506 Bacteria 9321252
143 2997453815 2997451912 Bacteria 8492419
144 2997601896 2997600082 Bacteria 9896405
145 3006323402 3006321560 Bacteria 8247479
146 8008560372 8008558824 Bacteria 10610750
147 8025478759 8025478263 Bacteria 8209203
148 8033690893 8033684223 Bacteria 6906479
149 8048132915 8048127548 Bacteria 11053136
150 8048358933 8048356638 Bacteria 11044339
151 8048376944 8048369669 Bacteria 11666822
152 8048385997 8048379754 Bacteria 11877923
153 8053946448 8053945823 Bacteria 8962862
154 8055073636 8055066027 Bacteria 9479577
155 rootH1_10005029
156 rootH2_10073078
157 rootL2_10000433
158 rootH1_10002577
159 JGI25160J50197_1013432
160 JGI25160J50197_1023049
161 Ga0070668_100089516
162 Ga0070674_100238905
163 Ga0070667_100164871
164 Ga0070714_100002605
165 Ga0068854_100074250
166 Ga0070702_100000792
167 Ga0068866_10106064
168 Ga0068860_100168138
169 Ga0070717_10065473
170 Ga0075431_100072902
171 Ga0105238_10197598
172 Ga0157378_10015508
173 Ga0157372_10114034
174 Ga0182008_10001939
175 Ga0163161_10109119
176 Ga0213875_10038840
177 Ga0207426_1003125
178 Ga0207426_1015261
179 Ga0207647_10150312
180 Ga0207664_10013495
181 Ga0207669_10097037
182 Ga0207668_10074497
183 Ga0207658_10093328
184 Ga0207675_100117053
185 Ga0307517_10004044
186 Ga0307515_10250537
187 Ga0307512_10012805
188 Ga0307513_10000135
189 Ga0307513_10000350
190 Ga0307513_10026244
191 Ga0307513_10104721
192 Ga0307508_10011114
193 Ga0307508_10065417
194 Ga0307514_10067035
195 Ga0316214_1000591
196 Ga0395905_0124469
197 Ga0436364_1395922
198 Ga0439436_0026832
199 Ga0439436_0040002
200 Ga0439439_0009850
201 Ga0439439_0022459
202 Ga0451837_0100167
203 Ga0451853_0440608
204 Ga0451853_1015589
205 Ga0439433_0027655
206 Ga0439448_0009567
207 Ga0439455_0002165
208 Ga0439457_001391
209 Ga0450894_006863
210 Ga0450903_000486
211 Ga0439458_0001302
212 Ga0495585_0026692
213 Ga0495643_0003006
214 Ga0495625_0048457
215 Ga0495623_0011791
216 Ga0495670_0112067
217 Ga0495604_0011699
218 Ga0495604_0026695
219 Ga0495675_0003868
220 Ga0495685_003402
221 Ga0495686_0121619
222 Ga0501031_0000688
223 Ga0501031_0079012
224 Ga0501032_0000508
225 Ga0501032_0233270
226 Ga0501033_0046111
227 Ga0501034_0001988
228 Ga0501034_0052934
229 Ga0501036_0065456
230 Ga0501037_0000799
231 Ga0501038_0001181
232 Ga0501038_0006283
233 Ga0501039_0081084
234 Ga0501040_0013652
235 Ga0501041_0004346
236 Ga0501043_0002888
237 Ga0501043_0086453
238 Ga0501046_0001064
239 Ga0501047_0000823
240 Ga0501048_0001884
241 Ga0501067_0003147
242 Ga0501069_0042250
243 Ga0501070_0001989
244 Ga0501072_0007334
245 Ga0501073_0105598
246 Ga0501074_0006074
247 Ga0501076_0003435
248 Ga0501077_0008313
249 Ga0501079_0010183
250 Ga0501083_0001444
251 Ga0501035_0000812
252 Ga0501035_0005206
253 Ga0501044_0001218
254 Ga0501044_0065865
255 Ga0501044_0246560
256 nmdc:mga03n38_76616_c1
257 Ga0500654_048639
258 Ga0500569_018262
259 Ga0500580_013261
260 Ga0500573_0002378
261 Ga0500616_0000146
262 Ga0500616_0003308
263 Ga0500633_0007494
264 Ga0500634_0047911
265 Ga0500587_007072
266 Ga0501084_0021812
267 Ga0501082_0003871
268 Ga0530510_0021372
269 8047899995
270 2514042032
271 2515721007
272 2515759333
273 2676493119
274 2785346849
275 2786674291
276 2793983927
277 2795785915
278 2811843062
279 2856744648
280 2858696999
281 2862383232
282 2867315034
283 2867319969
284 2867369700
285 2867478128
286 2873317035
287 2884702824
288 2891399412
289 2891558879
290 2891564186
291 2895449240
292 2901305857
293 2954009230
294 2954681120
295 2954683037
296 2990061035
297 2997453815
298 2997601896
299 3006323402
300 8008560372
301 8025478759
302 8033690893
303 8048132915
304 8048358933
305 8048376944
306 8048385997
307 8053946448
308 8055073636

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13535

ATP-grasp_4

ATP-grasp domain

200

341

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vot-assembly1.cif.gz_A crystal structure of l-amino acid ligase from bacillus licheniformis 0.8107 2 394
3vot-assembly1.cif.gz_A crystal structure of l-amino acid ligase from bacillus licheniformis 0.807 2 394
3wnz-assembly1.cif.gz_A crystal structure of bacillus subtilis ywfe, an l-amino acid ligase, with bound adp-mg-pi 0.7952 1 394
3wnz-assembly1.cif.gz_A crystal structure of bacillus subtilis ywfe, an l-amino acid ligase, with bound adp-mg-pi 0.7934 1 394
3wo1-assembly1.cif.gz_A-2 crystal structure of trp332ala mutant ywfe, an l-amino acid ligase, with bound adp-mg-ala 0.789 1 394
ID Description Score Start End Superfamily
af_Q4CSN5_223_453_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.804 185 389 3.30.470.20
4yqzB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.7923 2 72 3.40.50.720
af_Q4CSN5_1_222_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.7897 2 185 3.40.50.20
3votB02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.7825 92 394 3.30.470.20
3votB02 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.7801 92 394 3.30.470.20
ID Description Score Start End GO Terms
AF-A0A0L0JM02-F1-model_v4 deleted 0.9969 322 394
AF-A0A0L0JM02-F1-model_v4 deleted 0.9835 322 394
AF-A0A257WL86-F1-model_v4 deleted 0.9644 317 394
AF-A0A4D4L1I1-F1-model_v4 ATP-grasp domain-containing protein 0.9552 183 393 GO:0005524
GO:0046872
AF-A0A257WL86-F1-model_v4 deleted 0.9526 317 394

Map