F219325

General Info

Members Datasets Scaffolds Average Seq Length
154 96 154 266

Family's Representative Sequence

Representative Sequence 3300006237|Ga0097621_100000005|Ga0097621_10000000574
Length 253
Sequence MATELVFEKRSKLFLAFQDSLIMIKRSGLHILRNTDQLLGAFFQPIMFLVLFSSVFGGAISKALPPGVSYLNFLMAGIIVQTAAFGSTTTAVAVCNDLQKGIVDRFRSLPMSNLAVLNGHVISDLFRNSISTLVMLVAGLAIGFRPHADFTQWLLIVGILLLFTLAFSWLAAFVLVFPLTFASTAFVPAEGMNRFLKAFAVNQPITHVVEAVRALILGKPMGDHGWLAAVWCVGVLIVAMPLASWLFRRKTSS

Samples

Sample ID Description Type Environment
1 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
2 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
21 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
22 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
23 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
24 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
40 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
55 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
56 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
57 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
58 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
59 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
60 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
61 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
62 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
63 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
64 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
67 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
68 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
69 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
70 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
73 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
74 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
75 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
76 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
77 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
78 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
79 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
80 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
81 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
82 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
83 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
84 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
85 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
86 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
87 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
88 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
89 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
90 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
91 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
92 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
93 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
94 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
95 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
96 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 44.81
Nodule 0
Rhizoplane 0
Rhizosphere 52.6
Stem 0
Stem Tuber 0
Unclassified 2.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1001452 3300001904 Bacteria 4343
2 JGI24741J21665_1000504 3300001915 Bacteria 11949
3 JGI24740J21852_10002152 3300001979 Bacteria 8999
4 JGI24740J21852_10032086 3300001979 Bacteria 1684
5 Ga0065704_10099392 3300005289 Unclassified 2314
6 Ga0070670_100008259 3300005331 Bacteria 8866
7 Ga0070666_10000419 3300005335 Bacteria 26347
8 Ga0070666_10019996 3300005335 Bacteria 4326
9 Ga0070666_10121635 3300005335 Bacteria 1810
10 Ga0070668_100220430 3300005347 Unclassified 1564
11 Ga0070671_100000001 3300005355 Bacteria 1228151
12 Ga0070671_100010324 3300005355 Bacteria 7492
13 Ga0070674_100001311 3300005356 Bacteria 13077
14 Ga0070667_100000001 3300005367 Bacteria 1108638
15 Ga0070667_100273467 3300005367 Bacteria 1515
16 Ga0070708_100595499 3300005445 Bacteria 1042
17 Ga0070678_100208621 3300005456 Bacteria 1617
18 Ga0070679_100085259 3300005530 Bacteria 3146
19 Ga0070672_100066000 3300005543 Bacteria 2864
20 Ga0068855_100010981 3300005563 Bacteria 10929
21 Ga0068856_100317631 3300005614 Bacteria 1575
22 Ga0068859_100048634 3300005617 Bacteria 4260
23 Ga0068861_100107916 3300005719 Bacteria 2226
24 Ga0068860_100004620 3300005843 Bacteria 14061
25 Ga0075365_10000022 3300006038 Bacteria 64465
26 Ga0075365_10000702 3300006038 Bacteria 13471
27 Ga0075365_10001064 3300006038 Bacteria 11877
28 Ga0075365_10042099 3300006038 Bacteria 2985
29 Ga0075365_10136545 3300006038 Bacteria 1700
30 Ga0075364_10001697 3300006051 Bacteria 12092
31 Ga0075364_10024683 3300006051 Bacteria 3820
32 Ga0075364_10046916 3300006051 Bacteria 2813
33 Ga0075364_10103443 3300006051 Bacteria 1896
34 Ga0075362_10192702 3300006177 Unclassified 990
35 Ga0075367_10000017 3300006178 Bacteria 34198
36 Ga0075369_10000002 3300006186 Bacteria 216197
37 Ga0075366_10000005 3300006195 Bacteria 107438
38 Ga0075366_10000046 3300006195 Bacteria 43756
39 Ga0075366_10000064 3300006195 Bacteria 39771
40 Ga0075366_10037540 3300006195 Bacteria 2861
41 Ga0075366_10085534 3300006195 Bacteria 1886
42 Ga0097621_100000005 3300006237 Bacteria 143888
43 Ga0068871_100000003 3300006358 Bacteria 141580
44 Ga0097620_100048632 3300006931 Bacteria 4260
45 Ga0105240_10258087 3300009093 Unclassified 2012
46 Ga0111539_10000710 3300009094 Bacteria 43187
47 Ga0105245_10000007 3300009098 Bacteria 312285
48 Ga0105245_10034597 3300009098 Bacteria 4482
49 Ga0105241_10000502 3300009174 Bacteria 29594
50 Ga0157370_10103107 3300013104 Bacteria 2671
51 Ga0157369_10000055 3300013105 Bacteria 161739
52 Ga0157369_10017909 3300013105 Bacteria 7951
53 Ga0157369_10376302 3300013105 Bacteria 1474
54 Ga0157374_10000014 3300013296 Bacteria 396846
55 Ga0157374_10036726 3300013296 Bacteria 4491
56 Ga0157374_10329760 3300013296 Bacteria 1514
57 Ga0157378_10014633 3300013297 Bacteria 6869
58 Ga0163162_10294758 3300013306 Bacteria 1754
59 Ga0157372_10036558 3300013307 Bacteria 5412
60 Ga0213875_10072552 3300021388 Bacteria 1607
61 Ga0207680_10000128 3300025903 Bacteria 35482
62 Ga0207680_10020391 3300025903 Bacteria 3567
63 Ga0207647_10000001 3300025904 Bacteria 506349
64 Ga0207647_10001238 3300025904 Bacteria 19648
65 Ga0207654_10002489 3300025911 Bacteria 9355
66 Ga0207695_10181680 3300025913 Unclassified 2024
67 Ga0207650_10073917 3300025925 Bacteria 2569
68 Ga0207687_10000008 3300025927 Bacteria 497738
69 Ga0207644_10000001 3300025931 Bacteria 1243214
70 Ga0207644_10034560 3300025931 Bacteria 3538
71 Ga0207669_10003353 3300025937 Bacteria 6930
72 Ga0207711_10530811 3300025941 Unclassified 1097
73 Ga0207667_10069253 3300025949 Bacteria 3673
74 Ga0207658_10000003 3300025986 Bacteria 1151934
75 Ga0207658_10102329 3300025986 Bacteria 2246
76 Ga0207658_10233017 3300025986 Bacteria 1555
77 Ga0207683_10430438 3300026121 Bacteria 1216
78 Ga0207428_10091195 3300027907 Bacteria 2365
79 Ga0268264_10004453 3300028381 Bacteria 11951
80 Ga0265338_10021410 3300028800 Bacteria 6743
81 Ga0265338_10140232 3300028800 Bacteria 1895
82 Ga0314311_1101571 3300030733 Bacteria 2403
83 Ga0316179_1019830 3300030734 Bacteria 16972
84 Ga0316183_1073503 3300030742 Bacteria 19331
85 Ga0316182_1085717 3300030745 Bacteria 12848
86 Ga0307516_10011168 3300031730 Bacteria 9803
87 Ga0436364_0343197 3300037853 Bacteria 2173
88 Ga0451833_0341051 3300041491 Unclassified 1116
89 Ga0439442_012568 3300042002 Bacteria 1731
90 Ga0439445_0001004 3300042004 Bacteria 6009
91 Ga0439432_005764 3300042006 Bacteria 4449
92 Ga0453684_0329208 3300044712 Bacteria 1728
93 Ga0495638_0001047 3300046460 Bacteria 27329
94 Ga0495609_0025184 3300046538 Bacteria 2729
95 Ga0495660_0016893 3300046810 Bacteria 4203
96 Ga0495672_0000016 3300047320 Bacteria 500601
97 Ga0495672_0253897 3300047320 Bacteria 852
98 Ga0501034_0000028 3300049571 Bacteria 255803
99 Ga0501034_0971351 3300049571 Bacteria 734
100 Ga0501037_0000011 3300049573 Bacteria 196525
101 Ga0501070_0637483 3300049586 Bacteria 847
102 nmdc:mga00v17_12988_c1 3300050491 Bacteria 4612
103 nmdc:mga00v17_16713_c1 3300050491 Bacteria 4138
104 nmdc:mga00v17_18540_c1 3300050491 Bacteria 3955
105 nmdc:mga00v17_48971_c1 3300050491 Bacteria 2562
106 nmdc:mga00v17_517_c1 3300050491 Bacteria 21600
107 nmdc:mga00v17_8049_c1 3300050491 Bacteria 5657
108 nmdc:mga0yw44_102_c1 3300050492 Bacteria 29634
109 nmdc:mga0yw44_114056_c1 3300050492 Bacteria 1734
110 nmdc:mga0yw44_133430_c1 3300050492 Bacteria 1609
111 nmdc:mga0yw44_22805_c1 3300050492 Bacteria 3516
112 nmdc:mga0yw44_24_c1 3300050492 Bacteria 63201
113 nmdc:mga0yw44_2_c1 3300050492 Bacteria 586884
114 nmdc:mga0k408_13_c2 3300050493 Bacteria 76830
115 nmdc:mga0k408_181_c1 3300050493 Bacteria 33119
116 nmdc:mga0k408_2936_c1 3300050493 Bacteria 9037
117 nmdc:mga0k408_35075_c1 3300050493 Bacteria 2875
118 nmdc:mga0k408_36_c1 3300050493 Bacteria 72881
119 nmdc:mga06z11_963_c1 3300050494 Bacteria 10486
120 nmdc:mga07m45_440_c2 3300050496 Bacteria 10323
121 nmdc:mga08y16_898_c1 3300050511 Bacteria 28751
122 nmdc:mga0sz30_15717_c1 3300050516 Bacteria 2994
123 nmdc:mga0sz30_1_c1 3300050516 Bacteria 796501
124 nmdc:mga0sz30_219546_c1 3300050516 Bacteria 845
125 nmdc:mga0sz30_42142_c1 3300050516 Bacteria 1280
126 Ga0500643_000043 3300053087 Bacteria 157905
127 Ga0500643_000251 3300053087 Bacteria 49425
128 Ga0500643_006657 3300053087 Bacteria 4791
129 Ga0500643_010907 3300053087 Bacteria 3352
130 Ga0500644_0000723 3300053088 Bacteria 11687
131 Ga0500644_0001494 3300053088 Bacteria 6147
132 Ga0500646_0001880 3300053090 Bacteria 5508
133 Ga0500646_0018784 3300053090 Bacteria 1824
134 Ga0500583_0003381 3300053092 Bacteria 5012
135 Ga0500583_0016814 3300053092 Bacteria 2930
136 Ga0500651_0000025 3300053093 Bacteria 123745
137 Ga0500651_0000032 3300053093 Bacteria 110364
138 Ga0500650_0000001 3300053098 Bacteria 818797
139 Ga0500555_000009 3300053103 Bacteria 263998
140 Ga0500556_0001307 3300053104 Bacteria 11190
141 Ga0500562_000001 3300053108 Bacteria 1178987
142 Ga0500562_024070 3300053108 Unclassified 1591
143 Ga0500594_0000001 3300053118 Bacteria 1178472
144 Ga0500594_0000011 3300053118 Bacteria 87409
145 Ga0500594_0000151 3300053118 Bacteria 18661
146 Ga0500628_000006 3300053129 Bacteria 154858
147 Ga0500655_001105 3300053133 Bacteria 5161
148 Ga0500655_003995 3300053133 Unclassified 2655
149 Ga0500577_0000278 3300053142 Bacteria 13360
150 Ga0500577_0000561 3300053142 Bacteria 9569
151 Ga0500588_0027825 3300053146 Bacteria 1597
152 Ga0500570_012403 3300053724 Bacteria 4765
153 Ga0500611_000207 3300053727 Bacteria 7179
154 Ga0500656_002576 3300053732 Bacteria 1651

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049571 Ga0501034_0971351 Ga0501034_0971351_40_711 223
2 3300053133 Ga0500655_003995 Ga0500655_003995_27_767 246
3 3300013306 Ga0163162_10294758 Ga0163162_102947582 247
4 3300047320 Ga0495672_0253897 Ga0495672_0253897_91_834 247
5 3300049586 Ga0501070_0637483 Ga0501070_0637483_23_766 247
6 3300050496 nmdc:mga07m45_440_c2 nmdc:mga07m45_440_c2_56_799 247
7 3300050516 nmdc:mga0sz30_219546_c1 nmdc:mga0sz30_219546_c1_17_760 247
8 3300005445 Ga0070708_100595499 Ga0070708_1005954991 249
9 3300005355 Ga0070671_100010324 Ga0070671_10001032410 250
10 3300005617 Ga0068859_100048634 Ga0068859_1000486345 250
11 3300006931 Ga0097620_100048632 Ga0097620_1000486325 250
12 3300025931 Ga0207644_10034560 Ga0207644_100345604 250
13 3300025941 Ga0207711_10530811 Ga0207711_105308112 250
14 3300006051 Ga0075364_10046916 Ga0075364_100469162 253
15 3300006237 Ga0097621_100000005 Ga0097621_10000000574 253
16 3300006358 Ga0068871_100000003 Ga0068871_10000000398 253
17 3300009098 Ga0105245_10000007 Ga0105245_10000007234 253
18 3300013296 Ga0157374_10000014 Ga0157374_10000014234 253
19 3300025927 Ga0207687_10000008 Ga0207687_10000008234 253
20 3300050491 nmdc:mga00v17_8049_c1 nmdc:mga00v17_8049_c1_554_1363 253
21 3300050492 nmdc:mga0yw44_22805_c1 nmdc:mga0yw44_22805_c1_1117_1926 253
22 3300049571 Ga0501034_0000028 Ga0501034_0000028_210379_211188 257
23 3300049573 Ga0501037_0000011 Ga0501037_0000011_177351_178160 257
24 3300053103 Ga0500555_000009 Ga0500555_000009_20462_21283 258
25 3300053087 Ga0500643_010907 Ga0500643_010907_1121_1915 264
26 3300053093 Ga0500651_0000025 Ga0500651_0000025_72862_73656 264
27 3300053118 Ga0500594_0000011 Ga0500594_0000011_13754_14548 264
28 3300031730 Ga0307516_10011168 Ga0307516_100111687 265
29 3300006195 Ga0075366_10085534 Ga0075366_100855343 266
30 3300050493 nmdc:mga0k408_2936_c1 nmdc:mga0k408_2936_c1_5879_6679 266
31 3300005335 Ga0070666_10019996 Ga0070666_100199962 268
32 3300005530 Ga0070679_100085259 Ga0070679_1000852597 268
33 3300005614 Ga0068856_100317631 Ga0068856_1003176312 268
34 3300006038 Ga0075365_10000022 Ga0075365_1000002262 268
35 3300006051 Ga0075364_10001697 Ga0075364_1000169712 268
36 3300006051 Ga0075364_10024683 Ga0075364_100246831 268
37 3300006178 Ga0075367_10000017 Ga0075367_1000001739 268
38 3300006186 Ga0075369_10000002 Ga0075369_1000000271 268
39 3300006195 Ga0075366_10000064 Ga0075366_1000006429 268
40 3300009098 Ga0105245_10034597 Ga0105245_100345972 268
41 3300013297 Ga0157378_10014633 Ga0157378_100146337 268
42 3300025903 Ga0207680_10020391 Ga0207680_100203912 268
43 3300030733 Ga0314311_1101571 Ga0314311_11015711 268
44 3300030734 Ga0316179_1019830 Ga0316179_10198305 268
45 3300030742 Ga0316183_1073503 Ga0316183_107350317 268
46 3300030745 Ga0316182_1085717 Ga0316182_10857177 268
47 3300041491 Ga0451833_0341051 Ga0451833_0341051_283_1089 268
48 3300042002 Ga0439442_012568 Ga0439442_012568_681_1487 268
49 3300042004 Ga0439445_0001004 Ga0439445_0001004_4169_4975 268
50 3300042006 Ga0439432_005764 Ga0439432_005764_226_1032 268
51 3300050491 nmdc:mga00v17_12988_c1 nmdc:mga00v17_12988_c1_1877_2683 268
52 3300050491 nmdc:mga00v17_18540_c1 nmdc:mga00v17_18540_c1_382_1188 268
53 3300050491 nmdc:mga00v17_517_c1 nmdc:mga00v17_517_c1_2297_3103 268
54 3300050492 nmdc:mga0yw44_24_c1 nmdc:mga0yw44_24_c1_40996_41802 268
55 3300050493 nmdc:mga0k408_181_c1 nmdc:mga0k408_181_c1_26781_27587 268
56 3300050494 nmdc:mga06z11_963_c1 nmdc:mga06z11_963_c1_8395_9201 268
57 3300050516 nmdc:mga0sz30_1_c1 nmdc:mga0sz30_1_c1_569814_570620 268
58 3300053087 Ga0500643_006657 Ga0500643_006657_2988_3794 268
59 3300053090 Ga0500646_0001880 Ga0500646_0001880_1539_2345 268
60 3300053090 Ga0500646_0018784 Ga0500646_0018784_285_1091 268
61 3300053092 Ga0500583_0016814 Ga0500583_0016814_184_990 268
62 3300053093 Ga0500651_0000032 Ga0500651_0000032_78300_79106 268
63 3300053098 Ga0500650_0000001 Ga0500650_0000001_683101_683907 268
64 3300053104 Ga0500556_0001307 Ga0500556_0001307_9105_9911 268
65 3300053108 Ga0500562_024070 Ga0500562_024070_129_935 268
66 3300053118 Ga0500594_0000001 Ga0500594_0000001_164939_165745 268
67 3300053142 Ga0500577_0000561 Ga0500577_0000561_8205_9011 268
68 3300053724 Ga0500570_012403 Ga0500570_012403_807_1613 268
69 3300053732 Ga0500656_002576 Ga0500656_002576_556_1362 268
70 3300001904 JGI24736J21556_1001452 JGI24736J21556_10014522 269
71 3300001915 JGI24741J21665_1000504 JGI24741J21665_100050412 269
72 3300001979 JGI24740J21852_10002152 JGI24740J21852_100021524 269
73 3300001979 JGI24740J21852_10032086 JGI24740J21852_100320862 269
74 3300005289 Ga0065704_10099392 Ga0065704_100993922 269
75 3300005331 Ga0070670_100008259 Ga0070670_10000825910 269
76 3300005335 Ga0070666_10000419 Ga0070666_1000041920 269
77 3300005335 Ga0070666_10121635 Ga0070666_101216352 269
78 3300005347 Ga0070668_100220430 Ga0070668_1002204302 269
79 3300005355 Ga0070671_100000001 Ga0070671_100000001573 269
80 3300005356 Ga0070674_100001311 Ga0070674_10000131111 269
81 3300005367 Ga0070667_100000001 Ga0070667_100000001684 269
82 3300005367 Ga0070667_100273467 Ga0070667_1002734672 269
83 3300005456 Ga0070678_100208621 Ga0070678_1002086212 269
84 3300005543 Ga0070672_100066000 Ga0070672_1000660003 269
85 3300005563 Ga0068855_100010981 Ga0068855_1000109812 269
86 3300005719 Ga0068861_100107916 Ga0068861_1001079162 269
87 3300005843 Ga0068860_100004620 Ga0068860_1000046208 269
88 3300006038 Ga0075365_10000702 Ga0075365_100007029 269
89 3300006038 Ga0075365_10001064 Ga0075365_1000106414 269
90 3300006038 Ga0075365_10042099 Ga0075365_100420992 269
91 3300006038 Ga0075365_10136545 Ga0075365_101365453 269
92 3300006051 Ga0075364_10103443 Ga0075364_101034431 269
93 3300006177 Ga0075362_10192702 Ga0075362_101927022 269
94 3300006195 Ga0075366_10000005 Ga0075366_1000000514 269
95 3300006195 Ga0075366_10000046 Ga0075366_1000004620 269
96 3300006195 Ga0075366_10037540 Ga0075366_100375402 269
97 3300009093 Ga0105240_10258087 Ga0105240_102580872 269
98 3300009094 Ga0111539_10000710 Ga0111539_1000071020 269
99 3300009174 Ga0105241_10000502 Ga0105241_1000050213 269
100 3300013104 Ga0157370_10103107 Ga0157370_101031074 269
101 3300013105 Ga0157369_10000055 Ga0157369_10000055140 269
102 3300013105 Ga0157369_10017909 Ga0157369_100179092 269
103 3300013105 Ga0157369_10376302 Ga0157369_103763022 269
104 3300013296 Ga0157374_10036726 Ga0157374_100367263 269
105 3300013296 Ga0157374_10329760 Ga0157374_103297602 269
106 3300013307 Ga0157372_10036558 Ga0157372_100365582 269
107 3300021388 Ga0213875_10072552 Ga0213875_100725522 269
108 3300025903 Ga0207680_10000128 Ga0207680_1000012821 269
109 3300025904 Ga0207647_10000001 Ga0207647_10000001283 269
110 3300025904 Ga0207647_10001238 Ga0207647_1000123820 269
111 3300025911 Ga0207654_10002489 Ga0207654_1000248913 269
112 3300025913 Ga0207695_10181680 Ga0207695_101816802 269
113 3300025925 Ga0207650_10073917 Ga0207650_100739172 269
114 3300025931 Ga0207644_10000001 Ga0207644_10000001862 269
115 3300025937 Ga0207669_10003353 Ga0207669_100033538 269
116 3300025949 Ga0207667_10069253 Ga0207667_100692532 269
117 3300025986 Ga0207658_10000003 Ga0207658_10000003696 269
118 3300025986 Ga0207658_10102329 Ga0207658_101023292 269
119 3300025986 Ga0207658_10233017 Ga0207658_102330172 269
120 3300026121 Ga0207683_10430438 Ga0207683_104304381 269
121 3300027907 Ga0207428_10091195 Ga0207428_100911952 269
122 3300028381 Ga0268264_10004453 Ga0268264_100044535 269
123 3300028800 Ga0265338_10021410 Ga0265338_100214105 269
124 3300028800 Ga0265338_10140232 Ga0265338_101402321 269
125 3300037853 Ga0436364_0343197 Ga0436364_0343197_336_1145 269
126 3300044712 Ga0453684_0329208 Ga0453684_0329208_569_1381 269
127 3300046460 Ga0495638_0001047 Ga0495638_0001047_10273_11082 269
128 3300046538 Ga0495609_0025184 Ga0495609_0025184_1812_2621 269
129 3300046810 Ga0495660_0016893 Ga0495660_0016893_91_903 269
130 3300047320 Ga0495672_0000016 Ga0495672_0000016_386007_386816 269
131 3300050491 nmdc:mga00v17_16713_c1 nmdc:mga00v17_16713_c1_2715_3524 269
132 3300050491 nmdc:mga00v17_48971_c1 nmdc:mga00v17_48971_c1_1518_2327 269
133 3300050492 nmdc:mga0yw44_102_c1 nmdc:mga0yw44_102_c1_24194_25003 269
134 3300050492 nmdc:mga0yw44_114056_c1 nmdc:mga0yw44_114056_c1_840_1649 269
135 3300050492 nmdc:mga0yw44_133430_c1 nmdc:mga0yw44_133430_c1_613_1422 269
136 3300050492 nmdc:mga0yw44_2_c1 nmdc:mga0yw44_2_c1_429925_430737 269
137 3300050493 nmdc:mga0k408_13_c2 nmdc:mga0k408_13_c2_25810_26619 269
138 3300050493 nmdc:mga0k408_35075_c1 nmdc:mga0k408_35075_c1_1418_2230 269
139 3300050493 nmdc:mga0k408_36_c1 nmdc:mga0k408_36_c1_12057_12866 269
140 3300050511 nmdc:mga08y16_898_c1 nmdc:mga08y16_898_c1_4938_5747 269
141 3300050516 nmdc:mga0sz30_15717_c1 nmdc:mga0sz30_15717_c1_339_1148 269
142 3300050516 nmdc:mga0sz30_42142_c1 nmdc:mga0sz30_42142_c1_60_869 269
143 3300053087 Ga0500643_000043 Ga0500643_000043_86908_87717 269
144 3300053087 Ga0500643_000251 Ga0500643_000251_38000_38821 269
145 3300053088 Ga0500644_0000723 Ga0500644_0000723_5095_5904 269
146 3300053088 Ga0500644_0001494 Ga0500644_0001494_2795_3604 269
147 3300053092 Ga0500583_0003381 Ga0500583_0003381_1478_2299 269
148 3300053108 Ga0500562_000001 Ga0500562_000001_1116228_1117040 269
149 3300053118 Ga0500594_0000151 Ga0500594_0000151_5183_5992 269
150 3300053129 Ga0500628_000006 Ga0500628_000006_108072_108881 269
151 3300053133 Ga0500655_001105 Ga0500655_001105_2513_3325 269
152 3300053142 Ga0500577_0000278 Ga0500577_0000278_103_912 269
153 3300053146 Ga0500588_0027825 Ga0500588_0027825_157_978 269
154 3300053727 Ga0500611_000207 Ga0500611_000207_4358_5167 269

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01061

ABC2_membrane

ABC-2 type transporter

18

217

0.88

PF12698

ABC2_membrane_3

ABC-2 family transporter protein

65

246

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
7p05-assembly1.cif.gz_A cryo-em structure of pdr5 from saccharomyces cerevisiae in inward-facing conformation with adp/atp and rhodamine 6g 0.7362 16 263
8wbx-assembly1.cif.gz_B cryo-em structure of the abcg25 bound to aba 0.7295 13 265
8wd6-assembly1.cif.gz_A cryo-em structure of the abcg25 0.7256 16 265
7lkz-assembly1.cif.gz_A structure of atp-bound human abca4 0.7218 72 258
8i3c-assembly1.cif.gz_B cryo-em structure of abscisic acid transporter atabcg25 with chs 0.7122 13 265
ID Description Score Start End Superfamily
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.846 66 262 3.40.1710.10
af_Q9VMM9_322_706_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.8391 66 259 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.788 46 262 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6434 46 262 3.40.1710.10
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6337 66 262 3.40.1710.10
ID Description Score Start End GO Terms
AF-A0A3B8XEY2-F1-model_v4 deleted 0.9836 42 267
AF-A0A3B8XEY2-F1-model_v4 deleted 0.9751 42 267
AF-A0A059X6G3-F1-model_v4 Transport permease protein 0.9749 12 265 GO:0043190
GO:0140359
AF-A0A4V1ZIZ9-F1-model_v4 deleted 0.9698 1 269
AF-A0A059XA92-F1-model_v4 Transport permease protein 0.9678 1 253 GO:0043190
GO:0140359

Feature Viewer

pLDDT pTM Quality
87.47 0.85 High
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Predicted Structure (AlphaFold2)

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