F217345

General Info

Members Datasets Scaffolds Average Seq Length
153 30 306 231

Family's Representative Sequence

Representative Sequence 3300031241|Ga0265325_10041259|Ga0265325_100412592
Length 265
Sequence LLATLDYHGSRLAGGVTVARSASGTSGLGAARRPDYSVGASMIELRDVKKAFNQGQHNEYWALSGITLNLEAKRVTALRGPSGSGKTTLLTLIGCLARPTSGRVSLHGRDISGLPERFLTEIRRQTFGFVFQQFNLIKGMSALENVMLPAFPTGRAHRELVHRADALLDRLRLAHRRDARAEWLSGGEQQRVAIARALINDPEVLIADEPTANLDTALAKEFMAILEGFGAEGRTVILTSHDPLVVESAAVHRVIDMRDGLLVEQ

Samples

Sample ID Description Type Environment
1 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
2 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
3 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
4 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
5 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
6 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
7 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
8 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
9 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
10 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
11 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
12 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
13 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
14 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
15 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
16 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
17 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
18 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
19 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
20 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
21 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
22 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
23 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
24 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
25 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
26 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
27 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
28 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
29 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
30 2547132512 Azospira oryzae 6a3 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.69
Metatranscriptomes 0
Isolates 1.31

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 49.67
Stem 0
Stem Tuber 0
Unclassified 4.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265325_10041259 3300031241 Bacteria 2419
2 Ga0265318_10089311 3300028577 Bacteria 1135
3 Ga0265323_10012947 3300028653 Bacteria 3335
4 Ga0307511_10000046 3300030521 Bacteria 100284
5 Ga0265332_10000292 3300031238 Bacteria 39473
6 Ga0316575_10028989 3300031665 Bacteria 2160
7 Ga0316575_10063773 3300031665 Bacteria 1475
8 Ga0265314_10004283 3300031711 Bacteria 13344
9 Ga0316576_10003671 3300031727 Bacteria 9058
10 Ga0316576_10007078 3300031727 Bacteria 7028
11 Ga0316576_10021909 3300031727 Bacteria 4428
12 Ga0316576_10039487 3300031727 Bacteria 3388
13 Ga0316576_10489298 3300031727 Bacteria 906
14 Ga0316578_10015499 3300031728 Bacteria 4100
15 Ga0316578_10018901 3300031728 Bacteria 3785
16 Ga0316577_10067089 3300031733 Bacteria 2003
17 Ga0316577_10096953 3300031733 Bacteria 1652
18 Ga0316583_10008064 3300032133 Bacteria 3796
19 Ga0316585_10024185 3300032137 Bacteria 1878
20 Ga0316574_0060823 3300035398 Bacteria 2371
21 Ga0316574_0255529 3300035398 Bacteria 1119
22 Ga0316582_0007051 3300036647 Bacteria 5963
23 Ga0316582_0057682 3300036647 Bacteria 2481
24 Ga0316584_0049474 3300036712 Bacteria 3142
25 Ga0400484_18146 3300038725 Bacteria 29068
26 Ga0400484_23580 3300038725 Bacteria 1023
27 Ga0400484_30430 3300038725 Bacteria 11463
28 Ga0400484_32036 3300038725 Bacteria 12709
29 Ga0400484_41937 3300038725 Bacteria 2746
30 Ga0400490_02839 3300038726 Bacteria 2691
31 Ga0400490_05743 3300038726 Bacteria 21888
32 Ga0400490_13987 3300038726 Bacteria 16241
33 Ga0400490_19428 3300038726 Bacteria 1567
34 Ga0400490_21334 3300038726 Bacteria 39061
35 Ga0400490_29793 3300038726 Bacteria 15058
36 Ga0400490_33185 3300038726 Bacteria 15502
37 Ga0400490_40222 3300038726 Bacteria 38819
38 Ga0400490_45494 3300038726 Bacteria 40576
39 Ga0400490_45894 3300038726 Bacteria 9976
40 Ga0400490_48244 3300038726 Bacteria 12604
41 Ga0400491_10825 3300038727 Bacteria 3626
42 Ga0400485_06758 3300038735 Bacteria 13442
43 Ga0400485_11925 3300038735 Bacteria 6786
44 Ga0400485_13477 3300038735 Bacteria 14082
45 Ga0400485_14652 3300038735 Bacteria 151508
46 Ga0400485_15083 3300038735 Bacteria 2117
47 Ga0400485_16098 3300038735 Bacteria 1667
48 Ga0400485_16210 3300038735 Unclassified 2865
49 Ga0400485_21131 3300038735 Bacteria 1812
50 Ga0400488_10433 3300038741 Bacteria 1771
51 Ga0400488_19332 3300038741 Bacteria 6291
52 Ga0400488_24746 3300038741 Bacteria 1094
53 Ga0400488_30625 3300038741 Bacteria 6232
54 Ga0400488_32910 3300038741 Bacteria 1627
55 Ga0400488_34545 3300038741 Unclassified 2243
56 Ga0400488_40544 3300038741 Bacteria 3410
57 Ga0400488_41976 3300038741 Bacteria 1722
58 Ga0400488_60009 3300038741 Bacteria 12506
59 Ga0400486_07908 3300038742 Bacteria 8783
60 Ga0400486_12572 3300038742 Bacteria 2109
61 Ga0400486_13349 3300038742 Bacteria 1141
62 Ga0400486_13805 3300038742 Bacteria 28292
63 Ga0400486_17492 3300038742 Bacteria 2329
64 Ga0400486_19703 3300038742 Bacteria 4873
65 Ga0400486_19801 3300038742 Bacteria 9240
66 Ga0400486_20748 3300038742 Bacteria 12952
67 Ga0400486_23473 3300038742 Bacteria 4210
68 Ga0400486_27663 3300038742 Bacteria 1944
69 Ga0400483_014384 3300039062 Bacteria 3630
70 Ga0400483_032216 3300039062 Unclassified 1929
71 Ga0400483_056637 3300039062 Bacteria 12093
72 Ga0400483_059390 3300039062 Unclassified 1220
73 Ga0400483_087643 3300039062 Bacteria 14126
74 Ga0400483_111765 3300039062 Bacteria 10965
75 Ga0400483_112948 3300039062 Bacteria 4260
76 Ga0400483_147369 3300039062 Bacteria 1573
77 Ga0400483_150676 3300039062 Bacteria 2905
78 Ga0400483_159084 3300039062 Bacteria 3230
79 Ga0400483_177264 3300039062 Bacteria 1253
80 Ga0400483_182735 3300039062 Bacteria 6733
81 Ga0400483_206225 3300039062 Bacteria 2665
82 Ga0400483_240248 3300039062 Bacteria 13138
83 Ga0400483_262536 3300039062 Bacteria 1042
84 Ga0400483_268430 3300039062 Bacteria 10039
85 Ga0400483_269483 3300039062 Bacteria 5925
86 Ga0400483_274913 3300039062 Bacteria 33006
87 Ga0400489_10411 3300039093 Bacteria 1427
88 Ga0400489_70367 3300039093 Bacteria 31608
89 Ga0400487_17713 3300039110 Bacteria 2163
90 Ga0400487_21009 3300039110 Bacteria 21751
91 Ga0400487_28708 3300039110 Unclassified 4480
92 Ga0400487_34271 3300039110 Bacteria 1419
93 Ga0400487_35913 3300039110 Bacteria 6632
94 Ga0400487_39521 3300039110 Bacteria 14077
95 Ga0400487_39689 3300039110 Bacteria 1763
96 Ga0400487_50760 3300039110 Bacteria 7486
97 Ga0400487_55165 3300039110 Bacteria 23459
98 Ga0400487_64252 3300039110 Bacteria 31497
99 Ga0451577_0000040 3300042876 Bacteria 346755
100 Ga0451577_0000254 3300042876 Bacteria 105712
101 Ga0451577_0000981 3300042876 Bacteria 41544
102 Ga0451577_0032650 3300042876 Bacteria 4690
103 Ga0451577_0054547 3300042876 Unclassified 3568
104 Ga0451577_0069146 3300042876 Bacteria 3149
105 Ga0451577_0225772 3300042876 Bacteria 1693
106 Ga0451577_0236733 3300042876 Bacteria 1651
107 Ga0451577_0330991 3300042876 Bacteria 1381
108 Ga0453683_0000197 3300044673 Bacteria 82391
109 Ga0453683_0000233 3300044673 Bacteria 73679
110 Ga0453683_0003013 3300044673 Bacteria 12615
111 Ga0453683_0005698 3300044673 Bacteria 8648
112 Ga0453683_0143822 3300044673 Bacteria 1505
113 Ga0453683_0293268 3300044673 Bacteria 1040
114 Ga0453683_0482805 3300044673 Unclassified 803
115 Ga0453684_0000063 3300044712 Bacteria 486079
116 Ga0453684_0000177 3300044712 Bacteria 282969
117 Ga0453684_0000179 3300044712 Bacteria 280195
118 Ga0453684_0000189 3300044712 Bacteria 269690
119 Ga0453684_0000222 3300044712 Bacteria 249870
120 Ga0453684_0000860 3300044712 Bacteria 102244
121 Ga0453684_0001282 3300044712 Bacteria 75099
122 Ga0453684_0002437 3300044712 Bacteria 45214
123 Ga0453684_0005859 3300044712 Bacteria 23888
124 Ga0453684_0006771 3300044712 Bacteria 21564
125 Ga0453684_0015972 3300044712 Bacteria 11800
126 Ga0453684_0016124 3300044712 Bacteria 11722
127 Ga0453684_0019636 3300044712 Bacteria 10270
128 Ga0453684_0026862 3300044712 Bacteria 8293
129 Ga0453684_0119515 3300044712 Bacteria 3185
130 Ga0453684_0159900 3300044712 Bacteria 2665
131 Ga0453684_0168373 3300044712 Bacteria 2585
132 Ga0453684_0185669 3300044712 Bacteria 2437
133 Ga0453684_0204253 3300044712 Bacteria 2301
134 Ga0453684_0247587 3300044712 Bacteria 2048
135 Ga0453684_0318507 3300044712 Bacteria 1762
136 Ga0453684_0612675 3300044712 Bacteria 1192
137 Ga0453684_0698996 3300044712 Bacteria 1102
138 Ga0451576_0000096 3300045051 Bacteria 221078
139 Ga0451576_0000497 3300045051 Bacteria 86307
140 Ga0451576_0005469 3300045051 Bacteria 15911
141 Ga0451576_0005948 3300045051 Bacteria 15112
142 Ga0451576_0006465 3300045051 Bacteria 14364
143 Ga0451576_0007737 3300045051 Bacteria 12762
144 Ga0451576_0019068 3300045051 Bacteria 7496
145 Ga0451576_0033043 3300045051 Bacteria 5501
146 Ga0451576_0116509 3300045051 Bacteria 2782
147 Ga0451576_0201149 3300045051 Bacteria 2081
148 Ga0451576_0243768 3300045051 Bacteria 1877
149 Ga0451576_0277213 3300045051 Bacteria 1753
150 Ga0451576_0309332 3300045051 Bacteria 1653
151 Ga0451576_0602505 3300045051 Bacteria 1155
152 2526212732 2526164512 Bacteria 4025691
153 2548847717 2547132512 Bacteria 3416496
154 Ga0265325_10041259
155 Ga0265318_10089311
156 Ga0265323_10012947
157 Ga0307511_10000046
158 Ga0265332_10000292
159 Ga0316575_10028989
160 Ga0316575_10063773
161 Ga0265314_10004283
162 Ga0316576_10003671
163 Ga0316576_10007078
164 Ga0316576_10021909
165 Ga0316576_10039487
166 Ga0316576_10489298
167 Ga0316578_10015499
168 Ga0316578_10018901
169 Ga0316577_10067089
170 Ga0316577_10096953
171 Ga0316583_10008064
172 Ga0316585_10024185
173 Ga0316574_0060823
174 Ga0316574_0255529
175 Ga0316582_0007051
176 Ga0316582_0057682
177 Ga0316584_0049474
178 Ga0400484_18146
179 Ga0400484_23580
180 Ga0400484_30430
181 Ga0400484_32036
182 Ga0400484_41937
183 Ga0400490_02839
184 Ga0400490_05743
185 Ga0400490_13987
186 Ga0400490_19428
187 Ga0400490_21334
188 Ga0400490_29793
189 Ga0400490_33185
190 Ga0400490_40222
191 Ga0400490_45494
192 Ga0400490_45894
193 Ga0400490_48244
194 Ga0400491_10825
195 Ga0400485_06758
196 Ga0400485_11925
197 Ga0400485_13477
198 Ga0400485_14652
199 Ga0400485_15083
200 Ga0400485_16098
201 Ga0400485_16210
202 Ga0400485_21131
203 Ga0400488_10433
204 Ga0400488_19332
205 Ga0400488_24746
206 Ga0400488_30625
207 Ga0400488_32910
208 Ga0400488_34545
209 Ga0400488_40544
210 Ga0400488_41976
211 Ga0400488_60009
212 Ga0400486_07908
213 Ga0400486_12572
214 Ga0400486_13349
215 Ga0400486_13805
216 Ga0400486_17492
217 Ga0400486_19703
218 Ga0400486_19801
219 Ga0400486_20748
220 Ga0400486_23473
221 Ga0400486_27663
222 Ga0400483_014384
223 Ga0400483_032216
224 Ga0400483_056637
225 Ga0400483_059390
226 Ga0400483_087643
227 Ga0400483_111765
228 Ga0400483_112948
229 Ga0400483_147369
230 Ga0400483_150676
231 Ga0400483_159084
232 Ga0400483_177264
233 Ga0400483_182735
234 Ga0400483_206225
235 Ga0400483_240248
236 Ga0400483_262536
237 Ga0400483_268430
238 Ga0400483_269483
239 Ga0400483_274913
240 Ga0400489_10411
241 Ga0400489_70367
242 Ga0400487_17713
243 Ga0400487_21009
244 Ga0400487_28708
245 Ga0400487_34271
246 Ga0400487_35913
247 Ga0400487_39521
248 Ga0400487_39689
249 Ga0400487_50760
250 Ga0400487_55165
251 Ga0400487_64252
252 Ga0451577_0000040
253 Ga0451577_0000254
254 Ga0451577_0000981
255 Ga0451577_0032650
256 Ga0451577_0054547
257 Ga0451577_0069146
258 Ga0451577_0225772
259 Ga0451577_0236733
260 Ga0451577_0330991
261 Ga0453683_0000197
262 Ga0453683_0000233
263 Ga0453683_0003013
264 Ga0453683_0005698
265 Ga0453683_0143822
266 Ga0453683_0293268
267 Ga0453683_0482805
268 Ga0453684_0000063
269 Ga0453684_0000177
270 Ga0453684_0000179
271 Ga0453684_0000189
272 Ga0453684_0000222
273 Ga0453684_0000860
274 Ga0453684_0001282
275 Ga0453684_0002437
276 Ga0453684_0005859
277 Ga0453684_0006771
278 Ga0453684_0015972
279 Ga0453684_0016124
280 Ga0453684_0019636
281 Ga0453684_0026862
282 Ga0453684_0119515
283 Ga0453684_0159900
284 Ga0453684_0168373
285 Ga0453684_0185669
286 Ga0453684_0204253
287 Ga0453684_0247587
288 Ga0453684_0318507
289 Ga0453684_0612675
290 Ga0453684_0698996
291 Ga0451576_0000096
292 Ga0451576_0000497
293 Ga0451576_0005469
294 Ga0451576_0005948
295 Ga0451576_0006465
296 Ga0451576_0007737
297 Ga0451576_0019068
298 Ga0451576_0033043
299 Ga0451576_0116509
300 Ga0451576_0201149
301 Ga0451576_0243768
302 Ga0451576_0277213
303 Ga0451576_0309332
304 Ga0451576_0602505
305 2526212732
306 2548847717

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

63

212

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2pcj-assembly1.cif.gz_B crystal structure of abc transporter (aq_297) from aquifex aeolicus vf5 0.9542 1 242
5xu1-assembly1.cif.gz_A structure of a non-canonical abc transporter from streptococcus pneumoniae r6 0.9539 1 239
5ws4-assembly1.cif.gz_B crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii 0.9528 2 242
5lj9-assembly3.cif.gz_C structure of the e. coli macb abc domain (c2221) 0.9527 2 242
5nik-assembly1.cif.gz_J structure of the macab-tolc abc-type tripartite multidrug efflux pump 0.945 2 241
ID Description Score Start End Superfamily
af_Q2FUZ1_1_243_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9541 1 239 3.40.50.300
5xu1A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9539 1 239 3.40.50.300
af_P75957_1_229_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9529 1 236 3.40.50.300
2pclA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9422 1 242 3.40.50.300
af_O05779_1_226_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9416 2 240 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A5M6IEF2-F1-model_v4 ABC transporter ATP-binding protein 0.9672 1 236 GO:0005524
GO:0005886
GO:0016887
GO:0022857
AF-A0A838DTV6-F1-model_v4 ABC transporter ATP-binding protein 0.9647 1 242 GO:0005524
GO:0005886
GO:0016887
GO:0022857
AF-A0A372E171-F1-model_v4 ABC transporter ATP-binding protein 0.9626 1 239 GO:0005524
GO:0016887
AF-A0A1A9FAL8-F1-model_v4 deleted 0.9615 1 240
AF-A0A1E4BE00-F1-model_v4 Macrolide ABC transporter ATP-binding protein 0.9581 1 240 GO:0005524
GO:0005886
GO:0016887
GO:0022857

Map