F216533

General Info

Members Datasets Scaffolds Average Seq Length
153 116 306 182

Family's Representative Sequence

Representative Sequence 3300005841|Ga0068863_101006876|Ga0068863_1010068762
Length 211
Sequence LSSIHTVSYGHYAGRLHLSIRCRIDRPVAKVQTPRGAWVDAALQAVAAGGPDAVRVEALAASLGVSKGGFYWHFKSRQALLGEMLDTWEKAMVEDVIERLESGPADPRTKLQHLFELAKSVDFAVELALRDWSRRDREVAERLRRVDNRRMEYMRSLFGQFCADEEDAEARSMLAFSLFIGSYFIAARHPEKTRSDVLQLAIDRLLGESWD

Samples

Sample ID Description Type Environment
1 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
2 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
3 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
4 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
5 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
12 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
18 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
20 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
35 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
36 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
37 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
53 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
54 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
55 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
56 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
57 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
58 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
59 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
62 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
63 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
64 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
65 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
66 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
67 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
68 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
69 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
70 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
71 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
72 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
73 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
74 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
75 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
76 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
77 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
78 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
79 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
80 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
81 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
82 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
83 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
84 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
85 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
86 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
87 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
88 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
89 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
90 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
91 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
92 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
97 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
98 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
99 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
102 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
103 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
104 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
105 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
106 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
107 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
108 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
111 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
112 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
113 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
114 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
115 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
116 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.35
Metatranscriptomes 0.65
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.27
Nodule 0
Rhizoplane 12.42
Rhizosphere 80.39
Stem 0
Stem Tuber 0
Unclassified 4.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068863_101006876 3300005841 Bacteria 836
2 Ga0070677_10000003 3300005333 Bacteria 81204
3 Ga0070714_100011980 3300005435 Bacteria 6899
4 Ga0070714_100131428 3300005435 Bacteria 2238
5 Ga0070714_100131523 3300005435 Bacteria 2237
6 Ga0070713_100014255 3300005436 Bacteria 5895
7 Ga0070713_100074088 3300005436 Bacteria 2884
8 Ga0070700_100353406 3300005441 Bacteria 1090
9 Ga0070708_100012906 3300005445 Bacteria 6825
10 Ga0070708_100057131 3300005445 Bacteria 3473
11 Ga0070706_100700399 3300005467 Bacteria 939
12 Ga0070707_100028634 3300005468 Bacteria 5302
13 Ga0070707_100580170 3300005468 Bacteria 1084
14 Ga0070698_100002714 3300005471 Bacteria 19460
15 Ga0070698_100026729 3300005471 Bacteria 6004
16 Ga0070698_100038202 3300005471 Bacteria 4947
17 Ga0070698_100503806 3300005471 Bacteria 1149
18 Ga0070699_100078560 3300005518 Bacteria 2874
19 Ga0070699_100827909 3300005518 Bacteria 847
20 Ga0068854_100004745 3300005578 Bacteria 8571
21 Ga0068861_100170149 3300005719 Bacteria 1805
22 Ga0070717_10012942 3300006028 Bacteria 6372
23 Ga0070717_10016730 3300006028 Bacteria 5691
24 Ga0070717_10192223 3300006028 Bacteria 1783
25 Ga0070717_10264990 3300006028 Bacteria 1521
26 Ga0070717_10745564 3300006028 Unclassified 890
27 Ga0075365_10549822 3300006038 Unclassified 816
28 Ga0075363_100047518 3300006048 Bacteria 2280
29 Ga0075364_10189451 3300006051 Bacteria 1393
30 Ga0070712_100226007 3300006175 Bacteria 1484
31 Ga0097621_100196245 3300006237 Bacteria 1750
32 Ga0068871_100111330 3300006358 Bacteria 2303
33 Ga0075428_100015412 3300006844 Bacteria 8474
34 Ga0075431_100435043 3300006847 Bacteria 1309
35 Ga0075433_10000244 3300006852 Bacteria 31446
36 Ga0075429_100030043 3300006880 Bacteria 4720
37 Ga0075429_100620004 3300006880 Bacteria 948
38 Ga0075436_100051451 3300006914 Unclassified 2843
39 Ga0075435_100176930 3300007076 Bacteria 1802
40 Ga0105245_10000290 3300009098 Bacteria 47991
41 Ga0114129_10047339 3300009147 Bacteria 6043
42 Ga0114129_10408568 3300009147 Bacteria 1788
43 Ga0114129_11504373 3300009147 Bacteria 827
44 Ga0105243_10119789 3300009148 Bacteria 2217
45 Ga0105242_10000016 3300009176 Bacteria 124536
46 Ga0105249_10000073 3300009553 Bacteria 145660
47 Ga0157378_10368079 3300013297 Bacteria 1408
48 Ga0163163_10427561 3300014325 Bacteria 1383
49 Ga0157380_11283708 3300014326 Bacteria 779
50 Ga0182008_10207982 3300014497 Bacteria 997
51 Ga0157379_10023127 3300014968 Bacteria 5511
52 Ga0213875_10142921 3300021388 Bacteria 1120
53 Ga0207682_10000191 3300025893 Bacteria 27897
54 Ga0207684_10027328 3300025910 Bacteria 4863
55 Ga0207684_10219674 3300025910 Bacteria 1640
56 Ga0207684_10399405 3300025910 Bacteria 1182
57 Ga0207693_10816620 3300025915 Bacteria 718
58 Ga0207646_10037267 3300025922 Bacteria 4384
59 Ga0207646_10263413 3300025922 Bacteria 1558
60 Ga0207687_10000012 3300025927 Bacteria 370729
61 Ga0207687_10000075 3300025927 Bacteria 71856
62 Ga0207700_10048472 3300025928 Bacteria 3155
63 Ga0207700_10069644 3300025928 Bacteria 2701
64 Ga0207664_10019657 3300025929 Bacteria 4997
65 Ga0207664_10119704 3300025929 Bacteria 2202
66 Ga0207664_10209585 3300025929 Bacteria 1686
67 Ga0207686_10000045 3300025934 Bacteria 119702
68 Ga0207709_10241352 3300025935 Bacteria 1314
69 Ga0207665_10357320 3300025939 Bacteria 1104
70 Ga0207661_10000883 3300025944 Bacteria 19704
71 Ga0207661_10415633 3300025944 Bacteria 1221
72 Ga0207712_10000003 3300025961 Bacteria 615314
73 Ga0207640_10009480 3300025981 Bacteria 5453
74 Ga0207639_10609932 3300026041 Bacteria 1007
75 Ga0207675_100201788 3300026118 Bacteria 1910
76 Ga0307415_100751694 3300032126 Archaea 885
77 Ga0373943_0919014 3300035170 Bacteria 523
78 Ga0373955_0199368 3300035172 Bacteria 1191
79 Ga0373924_0365599 3300035410 Bacteria 643
80 Ga0373933_0183148 3300035724 Bacteria 1336
81 Ga0373937_0015016 3300036401 Bacteria 6842
82 Ga0372808_026619 3300036459 Bacteria 831
83 Ga0436364_1185104 3300037853 Bacteria 4473
84 Ga0395901_0409831 3300038443 Unclassified 1392
85 Ga0436363_0048007 3300039450 Bacteria 1631
86 Ga0436363_0499910 3300039450 Unclassified 1597
87 Ga0466972_0033802 3300044658 Bacteria 2508
88 Ga0466966_0073334 3300044684 Bacteria 2141
89 Ga0466961_0654435 3300044693 Bacteria 630
90 Ga0466963_0098679 3300044694 Bacteria 1997
91 Ga0466963_0413192 3300044694 Bacteria 952
92 Ga0466964_0022944 3300044706 Bacteria 2424
93 Ga0466971_0386955 3300044719 Bacteria 680
94 Ga0466957_0176014 3300044842 Bacteria 1395
95 Ga0466960_0140210 3300044901 Bacteria 1283
96 Ga0466958_0258789 3300045836 Bacteria 1114
97 Ga0466967_0006208 3300045976 Bacteria 8419
98 Ga0466967_0063480 3300045976 Bacteria 3282
99 Ga0466967_2373428 3300045976 Bacteria 526
100 Ga0495592_0377437 3300046454 Bacteria 903
101 Ga0495629_0054221 3300046459 Bacteria 2804
102 Ga0495651_0119082 3300046462 Bacteria 1942
103 Ga0495639_0018721 3300046475 Bacteria 3017
104 Ga0495662_0137918 3300046476 Bacteria 1200
105 Ga0495664_0411145 3300046477 Bacteria 812
106 Ga0495628_0462442 3300046516 Bacteria 920
107 Ga0495640_0493856 3300046533 Bacteria 745
108 Ga0495645_0090483 3300046543 Bacteria 2187
109 Ga0495667_0238053 3300046559 Bacteria 1160
110 Ga0495634_0003183 3300046642 Bacteria 13282
111 Ga0495635_0037574 3300046663 Bacteria 3352
112 Ga0495647_0000004 3300046681 Bacteria 140700
113 Ga0495658_0003907 3300046683 Bacteria 7364
114 Ga0495669_0000131 3300046684 Bacteria 47864
115 Ga0495669_0006013 3300046684 Bacteria 5061
116 Ga0495604_0149969 3300047317 Bacteria 1658
117 Ga0495676_0000395 3300047321 Bacteria 35252
118 Ga0495680_0114292 3300047322 Bacteria 1998
119 Ga0495602_0035919 3300048088 Bacteria 4617
120 Ga0495602_0248487 3300048088 Unclassified 1327
121 Ga0496100_0000008 3300048903 Bacteria 231974
122 Ga0496100_0000016 3300048903 Bacteria 166058
123 Ga0496101_0000016 3300048904 Bacteria 240753
124 Ga0496101_0000038 3300048904 Bacteria 166058
125 Ga0496102_0000093 3300048905 Bacteria 125578
126 Ga0496103_0000001 3300048906 Bacteria 643471
127 Ga0496104_0000003 3300048907 Bacteria 669219
128 Ga0496105_0000008 3300048908 Bacteria 335652
129 Ga0496106_0000027 3300048909 Bacteria 149560
130 Ga0496106_0000710 3300048909 Bacteria 23980
131 Ga0496107_0000003 3300048910 Bacteria 304038
132 Ga0496107_0000009 3300048910 Bacteria 231682
133 Ga0496108_0000002 3300048911 Bacteria 700890
134 Ga0496108_0645769 3300048911 Bacteria 920
135 Ga0496108_0832058 3300048911 Bacteria 795
136 Ga0496109_0000001 3300048912 Bacteria 700852
137 Ga0496110_0009841 3300048913 Bacteria 7747
138 Ga0496112_0153907 3300048915 Bacteria 2267
139 Ga0496113_0032011 3300048916 Bacteria 3820
140 Ga0496125_0055571 3300048928 Bacteria 3224
141 nmdc:mga0yw44_186818_c1 3300050492 Bacteria 1366
142 nmdc:mga05p37_117721_c1 3300050507 Bacteria 3265
143 nmdc:mga05p37_897167_c1 3300050507 Bacteria 956
144 nmdc:mga09592_88690_c1 3300050508 Bacteria 2642
145 nmdc:mga06r32_92586_c1 3300050510 Bacteria 2956
146 nmdc:mga08y16_123968_c1 3300050511 Bacteria 2688
147 nmdc:mga0rr50_125295_c1 3300050513 Bacteria 2050
148 nmdc:mga08x19_157100_c1 3300050514 Unclassified 1543
149 nmdc:mga0a205_45_c1 3300050515 Bacteria 68070
150 Ga0495612_0002584 3300053078 Bacteria 7467
151 Ga0495655_0000007 3300053083 Bacteria 201058
152 Ga0495619_0000929 3300053085 Bacteria 19273
153 Ga0500628_000003 3300053129 Bacteria 204304
154 Ga0068863_101006876
155 Ga0070677_10000003
156 Ga0070714_100011980
157 Ga0070714_100131428
158 Ga0070714_100131523
159 Ga0070713_100014255
160 Ga0070713_100074088
161 Ga0070700_100353406
162 Ga0070708_100012906
163 Ga0070708_100057131
164 Ga0070706_100700399
165 Ga0070707_100028634
166 Ga0070707_100580170
167 Ga0070698_100002714
168 Ga0070698_100026729
169 Ga0070698_100038202
170 Ga0070698_100503806
171 Ga0070699_100078560
172 Ga0070699_100827909
173 Ga0068854_100004745
174 Ga0068861_100170149
175 Ga0070717_10012942
176 Ga0070717_10016730
177 Ga0070717_10192223
178 Ga0070717_10264990
179 Ga0070717_10745564
180 Ga0075365_10549822
181 Ga0075363_100047518
182 Ga0075364_10189451
183 Ga0070712_100226007
184 Ga0097621_100196245
185 Ga0068871_100111330
186 Ga0075428_100015412
187 Ga0075431_100435043
188 Ga0075433_10000244
189 Ga0075429_100030043
190 Ga0075429_100620004
191 Ga0075436_100051451
192 Ga0075435_100176930
193 Ga0105245_10000290
194 Ga0114129_10047339
195 Ga0114129_10408568
196 Ga0114129_11504373
197 Ga0105243_10119789
198 Ga0105242_10000016
199 Ga0105249_10000073
200 Ga0157378_10368079
201 Ga0163163_10427561
202 Ga0157380_11283708
203 Ga0182008_10207982
204 Ga0157379_10023127
205 Ga0213875_10142921
206 Ga0207682_10000191
207 Ga0207684_10027328
208 Ga0207684_10219674
209 Ga0207684_10399405
210 Ga0207693_10816620
211 Ga0207646_10037267
212 Ga0207646_10263413
213 Ga0207687_10000012
214 Ga0207687_10000075
215 Ga0207700_10048472
216 Ga0207700_10069644
217 Ga0207664_10019657
218 Ga0207664_10119704
219 Ga0207664_10209585
220 Ga0207686_10000045
221 Ga0207709_10241352
222 Ga0207665_10357320
223 Ga0207661_10000883
224 Ga0207661_10415633
225 Ga0207712_10000003
226 Ga0207640_10009480
227 Ga0207639_10609932
228 Ga0207675_100201788
229 Ga0307415_100751694
230 Ga0373943_0919014
231 Ga0373955_0199368
232 Ga0373924_0365599
233 Ga0373933_0183148
234 Ga0373937_0015016
235 Ga0372808_026619
236 Ga0436364_1185104
237 Ga0395901_0409831
238 Ga0436363_0048007
239 Ga0436363_0499910
240 Ga0466972_0033802
241 Ga0466966_0073334
242 Ga0466961_0654435
243 Ga0466963_0098679
244 Ga0466963_0413192
245 Ga0466964_0022944
246 Ga0466971_0386955
247 Ga0466957_0176014
248 Ga0466960_0140210
249 Ga0466958_0258789
250 Ga0466967_0006208
251 Ga0466967_0063480
252 Ga0466967_2373428
253 Ga0495592_0377437
254 Ga0495629_0054221
255 Ga0495651_0119082
256 Ga0495639_0018721
257 Ga0495662_0137918
258 Ga0495664_0411145
259 Ga0495628_0462442
260 Ga0495640_0493856
261 Ga0495645_0090483
262 Ga0495667_0238053
263 Ga0495634_0003183
264 Ga0495635_0037574
265 Ga0495647_0000004
266 Ga0495658_0003907
267 Ga0495669_0000131
268 Ga0495669_0006013
269 Ga0495604_0149969
270 Ga0495676_0000395
271 Ga0495680_0114292
272 Ga0495602_0035919
273 Ga0495602_0248487
274 Ga0496100_0000008
275 Ga0496100_0000016
276 Ga0496101_0000016
277 Ga0496101_0000038
278 Ga0496102_0000093
279 Ga0496103_0000001
280 Ga0496104_0000003
281 Ga0496105_0000008
282 Ga0496106_0000027
283 Ga0496106_0000710
284 Ga0496107_0000003
285 Ga0496107_0000009
286 Ga0496108_0000002
287 Ga0496108_0645769
288 Ga0496108_0832058
289 Ga0496109_0000001
290 Ga0496110_0009841
291 Ga0496112_0153907
292 Ga0496113_0032011
293 Ga0496125_0055571
294 nmdc:mga0yw44_186818_c1
295 nmdc:mga05p37_117721_c1
296 nmdc:mga05p37_897167_c1
297 nmdc:mga09592_88690_c1
298 nmdc:mga06r32_92586_c1
299 nmdc:mga08y16_123968_c1
300 nmdc:mga0rr50_125295_c1
301 nmdc:mga08x19_157100_c1
302 nmdc:mga0a205_45_c1
303 Ga0495612_0002584
304 Ga0495655_0000007
305 Ga0495619_0000929
306 Ga0500628_000003

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

39

84

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2g7s-assembly1.cif.gz_A-2 the crystal structure of transcriptional regulator, tetr family, from agrobacterium tumefaciens 0.813 2 166
2g7s-assembly1.cif.gz_A-2 the crystal structure of transcriptional regulator, tetr family, from agrobacterium tumefaciens 0.7873 2 166
4gfk-assembly1.cif.gz_A structures of no factors 0.7832 12 142
3crj-assembly1.cif.gz_B crystal structure of a tetr transcription regulator from haloarcula marismortui atcc 43049 0.7799 2 164
2hyj-assembly1.cif.gz_A-2 the crystal structure of a tetr-family transcriptional regulator from streptomyces coelicolor 0.7736 2 166
ID Description Score Start End Superfamily
5ojxA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9065 2 45 1.10.10.60
4jykB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.873 3 41 1.10.10.60
4xk4A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8668 3 41 1.10.10.60
3locA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.866 4 41 1.10.10.60
2y30A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8645 3 45 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A853C7H7-F1-model_v4 AcrR family transcriptional regulator 0.9541 2 166 GO:0000976
GO:0003700
AF-A0A1A9DC46-F1-model_v4 Transcriptional regulator, TetR family 0.9517 2 168 GO:0000976
GO:0003700
AF-A0A5C8NKJ5-F1-model_v4 TetR/AcrR family transcriptional regulator 0.946 2 166 GO:0000976
GO:0003700
AF-A0A401YD05-F1-model_v4 TetR family transcriptional regulator 0.9403 2 166 GO:0000976
GO:0003700
AF-A0A6N7CJ99-F1-model_v4 HTH tetR-type domain-containing protein 0.9349 3 166 GO:0000976
GO:0003700

Map